Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_022749.1
Length=39758
Score E
Sequences producing significant alignments: (Bits) Value
seq25697 136 1e-27
seq11573 114 3e-21
>seq25697
Length=8882
Score = 136 bits (150), Expect = 1e-27
Identities = 257/375 (69%), Gaps = 6/375 (2%)
Strand=Plus/Minus
Query 18674 TTATAAAACATTTCGATGTAATCAAAAATATCACCGCGAGCTTCTTCTCGCGTTCCGTAG 18733
||||||||||| || | ||||| || ||||| | ||||||| | || |||
Sbjct 3825 TTATAAAACATCTCCACATAATCGAAGATATCCGCCTTCGCTTCTTTCCTGTTTTTATAG 3766
Query 18734 ATCTTTTTCTTTATCCGTTCACGTTTCAGTAGCTGGAAAAAACTTTCTGCGACTGCGTTG 18793
||| ||| ||||| ||||| | ||| || | ||||||||| |||||||| || |||||
Sbjct 3765 ATCCGTTTTTTTATACGTTCCCATTTTAGCAACTGGAAAAAGCTTTCTGCCACCGCGTTA 3706
Query 18794 TCATGACAGTTACCGCGACGGCTCATACTGCCCTCCAGCCCGTGTGATTTCAGGAACGAC 18853
||||| || ||||| ||| | ||||| |||| | || ||| ||| || || |
Sbjct 3705 TCATGGCAATTACCCCGATGACTCATGCTGCTTTTCAAATTGTGAGATACCATAAAATGC 3646
Query 18854 TGCCACTCATAGCTTGTGTACTGACTGCCTTGATCAGAATGAACCAGCAC--CTGCTTTT 18911
|| ||| | || || || ||| ||||||||| ||||| | | || ||||| |
Sbjct 3645 TGGCACCTTTCACTGGTATATTGAGAGCCTTGATCTGAATGGATTAATACTTCTGCTGT- 3587
Query 18912 GAGGATTACGTCGCCACACGGCCATCAGAAGTGCATTCAGGACAATATCCTTTGTCATCC 18971
|| ||||||||||| || ||||||| | ||||| || || | || ||||| |
Sbjct 3586 -CGGTTTACGTCGCCATACCGCCATCAATAATGCATCCATCACTAACTCAGCGGTCATTC 3528
Query 18972 GGGGCTGCATTGACCAGCCAATAACTTTGCGCGAGAACAGGTC--AACAACCACAGCCAG 19029
| ||| |||||| ||||| || ||||| || || | ||| ||||||||
Sbjct 3527 GTCCTCCCATGCTCCAGCCTATAACCCGACGTGAGAAGAGATCGAGAGAACAACAGCCAG 3468
Query 19030 ATACAGCCAGCCTTC 19044
||| | |||||||||
Sbjct 3467 ATATAACCAGCCTTC 3453
>seq11573
Length=5225
Score = 114 bits (126), Expect = 3e-21
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 19726 TACCGCTCATGGGCACCTCTCTTTAAGTCATCTTAAATGACTCTGAGGTGTCTGTTAAAC 19785
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1710 TACCGCTCATGGGCACCTCTCTTTAAGTCATCTTAAATGACTCCGAGGTGTCTGATAAAC 1769
Query 19786 CTGTGGCGATTCA 19798
| | |||||||||
Sbjct 1770 CCGAGGCGATTCA 1782
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 127057135881360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |