Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq25697 136 1e-27 seq11573 114 3e-21 >seq25697 Length=8882 Score = 136 bits (150), Expect = 1e-27 Identities = 257/375 (69%), Gaps = 6/375 (2%) Strand=Plus/Minus Query 18674 TTATAAAACATTTCGATGTAATCAAAAATATCACCGCGAGCTTCTTCTCGCGTTCCGTAG 18733 ||||||||||| || | ||||| || ||||| | ||||||| | || ||| Sbjct 3825 TTATAAAACATCTCCACATAATCGAAGATATCCGCCTTCGCTTCTTTCCTGTTTTTATAG 3766 Query 18734 ATCTTTTTCTTTATCCGTTCACGTTTCAGTAGCTGGAAAAAACTTTCTGCGACTGCGTTG 18793 ||| ||| ||||| ||||| | ||| || | ||||||||| |||||||| || ||||| Sbjct 3765 ATCCGTTTTTTTATACGTTCCCATTTTAGCAACTGGAAAAAGCTTTCTGCCACCGCGTTA 3706 Query 18794 TCATGACAGTTACCGCGACGGCTCATACTGCCCTCCAGCCCGTGTGATTTCAGGAACGAC 18853 ||||| || ||||| ||| | ||||| |||| | || ||| ||| || || | Sbjct 3705 TCATGGCAATTACCCCGATGACTCATGCTGCTTTTCAAATTGTGAGATACCATAAAATGC 3646 Query 18854 TGCCACTCATAGCTTGTGTACTGACTGCCTTGATCAGAATGAACCAGCAC--CTGCTTTT 18911 || ||| | || || || ||| ||||||||| ||||| | | || ||||| | Sbjct 3645 TGGCACCTTTCACTGGTATATTGAGAGCCTTGATCTGAATGGATTAATACTTCTGCTGT- 3587 Query 18912 GAGGATTACGTCGCCACACGGCCATCAGAAGTGCATTCAGGACAATATCCTTTGTCATCC 18971 || ||||||||||| || ||||||| | ||||| || || | || ||||| | Sbjct 3586 -CGGTTTACGTCGCCATACCGCCATCAATAATGCATCCATCACTAACTCAGCGGTCATTC 3528 Query 18972 GGGGCTGCATTGACCAGCCAATAACTTTGCGCGAGAACAGGTC--AACAACCACAGCCAG 19029 | ||| |||||| ||||| || ||||| || || | ||| |||||||| Sbjct 3527 GTCCTCCCATGCTCCAGCCTATAACCCGACGTGAGAAGAGATCGAGAGAACAACAGCCAG 3468 Query 19030 ATACAGCCAGCCTTC 19044 ||| | ||||||||| Sbjct 3467 ATATAACCAGCCTTC 3453 >seq11573 Length=5225 Score = 114 bits (126), Expect = 3e-21 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 19726 TACCGCTCATGGGCACCTCTCTTTAAGTCATCTTAAATGACTCTGAGGTGTCTGTTAAAC 19785 ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 1710 TACCGCTCATGGGCACCTCTCTTTAAGTCATCTTAAATGACTCCGAGGTGTCTGATAAAC 1769 Query 19786 CTGTGGCGATTCA 19798 | | ||||||||| Sbjct 1770 CCGAGGCGATTCA 1782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127057135881360