Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_023561.1
Length=173276
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 163 3e-35
seq2698 123 3e-23
seq1262 91.5 2e-13
seq2410 86.0 7e-12
>seq2789
Length=15484
Score = 163 bits (180), Expect = 3e-35
Identities = 503/773 (65%), Gaps = 29/773 (4%)
Strand=Plus/Plus
Query 40137 ATGTCAGGATACATTCGTTTACTTGCACATTCCAATGCAAGTTGTTTGATGTCATAATTC 40196
|| |||||||||||||||| ||| |||||| | || |||||||| || ||||||||
Sbjct 3132 ATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATTA 3191
Query 40197 ACATCAGTTGGATGAAGGTTAATT---CCTTCTTCAA---CAAACATAACGAGCTTAGGA 40250
||| | || || || || ||||||| | |||| ||| || || |||
Sbjct 3192 GGATCGCT---ATTAATTCTATTTGTCCCTTCTTTTATGGCAAA---AACAAGTTTTGGA 3245
Query 40251 AAAATTGGAGTGATTCCGTCTCGTCCAAGGCCTTTGATTCTATTTTTGAGAATAGCTTTT 40310
|| | || || || | | ||| | || || ||||| ||| | | || | ||||
Sbjct 3246 AATACTGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTT 3305
Query 40311 TGAATCATACGTTCATAATCGCTTGTGCCAGTACCAAACGTAATTGTCACGAATGGAGTT 40370
||||| | | ||| | | | | ||| ||||| || || || ||||| |||
Sbjct 3306 TGAATTAATCTTTCCTCTTTTGTAATTCCAAGTCCAAAACCAAAAGTAACAAATGGGGTT 3365
Query 40371 TGACCATTTGAGCTGAACAGAGTATTGACTTCATATTCATAAGCTTGGAATGCGTCGTAT 40430
|| ||||||| | | || |||||| | ||||||||| | |||| || || || |
Sbjct 3366 TGTCCATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAAA 3425
Query 40431 ACGTCTTTTTCTGTTTTCTCAATCGCGTATACATAGTCATTGACATGCTCAATGCCGTAT 40490
|||||||| |||| ||| | | ||| || |||| | | |||
Sbjct 3426 CATTCTTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTA------TAT 3479
Query 40491 CTTTCTGCATCGTG---TAAATGT-TTAAAGAAAGTCTTCTCTACAAAAGGAGCAAGTAC 40546
|||||| || | ||| | | || |||| | || ||| |||| || | |
Sbjct 3480 TTTTCTGTTTCTTTAATTAACTTTATTTCAGAAGCTTTT----ACATAAGGGGCTAAAAT 3535
Query 40547 AACATCAACATTAGCAAATGTCGTTCCACCATATTGATGTGAAGCTACTTGAGCAGTGAT 40606
|| ||| | ||| || || ||||||||||| ||| || ||||| || | ||
Sbjct 3536 AATATCGATATTGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTAT 3595
Query 40607 TTGAGCCATAATAGCAGTTGCTACACCAATTGACTTTGGAGTCTCAATTTGAGCATTACC 40666
|||||| | ||||| |||||| |||||||| |||||| ||||||| |||||| ||
Sbjct 3596 TTGAGCAGTTATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCC 3655
Query 40667 AAGTTTAAATCCATTGCTGAGCATACCCTTCAAATCGACTAAGCAACAGTTAGTGAATGG 40726
| |||||| ||| ||||| || || ||||| ||||| ||| ||| | |||
Sbjct 3656 TATTTTAAAGCCACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGG 3715
Query 40727 AAGAGCTGGAGAATAGTCTAAGTCATGAAAATGAATAAGACCTTTATCATGAG---CATT 40783
|| | ||| ||||| ||||| |||||| ||||||| |||||| ||||||| ||
Sbjct 3716 AAAAAATGGTGAATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGCGTCAAC 3775
Query 40784 TAGAACAGTAGGAGAGATAACCTGACGAGCAATGTGTTTTGAAACAATTCCTGCCATCAG 40843
|| | | ||| ||| | |||| ||||| |||| || || || | ||
Sbjct 3776 TACGTCTTTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAA 3835
Query 40844 GTCTCGTTGAGTTGGAAAAACACGAGAATCTTTATTGGCATTCTCGTTGAGTA 40896
|||| ||||||||||| |||| ||||||||| ||||| || || ||||
Sbjct 3836 ATCTCTTTGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTAGTA 3888
>seq2698
Length=11445
Score = 123 bits (136), Expect = 3e-23
Identities = 146/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 61351 GTGAAAGTGCGTGAAATAACGTCGCGCTGTTGCTCTGGAGTTAGAGCATTAAAACGAACG 61410
|||||||| | | |||||| || | ||||| || || |||| || ||||| | |||
Sbjct 5493 GTGAAAGTTCTGGTAATAACATCTTGTTGTTGTTCAGGTGTTAAAGAGTTAAATCTAACA 5434
Query 61411 GCATAGCCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCATCT 61470
||||| || ||||| | ||| || | ||| || |||||||| ||||||| ||||||||
Sbjct 5433 GCATATCCTGAAACCCTAATTGTTAACTGCGGGTATTTTTCAGGATGTTCTACTGCATCA 5374
Query 61471 TCTAAAGTTTCTTTAGACAGCACGTTCACGTTCAAATGCTGTCCACCTTCAACTTTAACT 61530
| |||||||| || ||||| || || ||||| ||||||||||||||| | ||
Sbjct 5373 AGAAGTGTTTCTTTTCGAAGAACGTTTACATTTAAATGTTGTCCACCTTCAACTCTTACA 5314
Query 61531 GTAGGCTTGGTTTCAATT 61548
||||| | |||||||
Sbjct 5313 GTAGGACTTTCTTCAATT 5296
>seq1262
Length=72559
Score = 91.5 bits (100), Expect = 2e-13
Identities = 67/78 (86%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 74608 TTGGTGACCCCAGCAGGACTCGAACCTGCAACCTAGCGATTATGAGTCGCGTGCTCTAAC 74667
|||||| |||| || ||||| ||||| || ||||| ||||||||||||| ||||||||||
Sbjct 63817 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAAC 63876
Query 74668 CAATTGAGCTATAGGGCC 74685
||| ||||||| |||||
Sbjct 63877 CAACTGAGCTAAGGGGCC 63894
>seq2410
Length=3205
Score = 86.0 bits (94), Expect = 7e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 74608 TTGGTGACCCCAGCAGGACTCGAACCTGCAACCTAGCGATTATGAGTCGCGTGCTCTAAC 74667
|||||| |||| || ||||| ||||| || ||||| ||||||||||||| |||||||||
Sbjct 1027 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTGCTCTAAC 968
Query 74668 CAATTGAGCTATAGGGC 74684
||| ||||||| ||||
Sbjct 967 CAACTGAGCTAAGGGGC 951
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 554140047817440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |