Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_023561.1 Length=173276 Score E Sequences producing significant alignments: (Bits) Value seq2789 163 3e-35 seq2698 123 3e-23 seq1262 91.5 2e-13 seq2410 86.0 7e-12 >seq2789 Length=15484 Score = 163 bits (180), Expect = 3e-35 Identities = 503/773 (65%), Gaps = 29/773 (4%) Strand=Plus/Plus Query 40137 ATGTCAGGATACATTCGTTTACTTGCACATTCCAATGCAAGTTGTTTGATGTCATAATTC 40196 || |||||||||||||||| ||| |||||| | || |||||||| || |||||||| Sbjct 3132 ATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATTA 3191 Query 40197 ACATCAGTTGGATGAAGGTTAATT---CCTTCTTCAA---CAAACATAACGAGCTTAGGA 40250 ||| | || || || || ||||||| | |||| ||| || || ||| Sbjct 3192 GGATCGCT---ATTAATTCTATTTGTCCCTTCTTTTATGGCAAA---AACAAGTTTTGGA 3245 Query 40251 AAAATTGGAGTGATTCCGTCTCGTCCAAGGCCTTTGATTCTATTTTTGAGAATAGCTTTT 40310 || | || || || | | ||| | || || ||||| ||| | | || | |||| Sbjct 3246 AATACTGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTT 3305 Query 40311 TGAATCATACGTTCATAATCGCTTGTGCCAGTACCAAACGTAATTGTCACGAATGGAGTT 40370 ||||| | | ||| | | | | ||| ||||| || || || ||||| ||| Sbjct 3306 TGAATTAATCTTTCCTCTTTTGTAATTCCAAGTCCAAAACCAAAAGTAACAAATGGGGTT 3365 Query 40371 TGACCATTTGAGCTGAACAGAGTATTGACTTCATATTCATAAGCTTGGAATGCGTCGTAT 40430 || ||||||| | | || |||||| | ||||||||| | |||| || || || | Sbjct 3366 TGTCCATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAAA 3425 Query 40431 ACGTCTTTTTCTGTTTTCTCAATCGCGTATACATAGTCATTGACATGCTCAATGCCGTAT 40490 |||||||| |||| ||| | | ||| || |||| | | ||| Sbjct 3426 CATTCTTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTA------TAT 3479 Query 40491 CTTTCTGCATCGTG---TAAATGT-TTAAAGAAAGTCTTCTCTACAAAAGGAGCAAGTAC 40546 |||||| || | ||| | | || |||| | || ||| |||| || | | Sbjct 3480 TTTTCTGTTTCTTTAATTAACTTTATTTCAGAAGCTTTT----ACATAAGGGGCTAAAAT 3535 Query 40547 AACATCAACATTAGCAAATGTCGTTCCACCATATTGATGTGAAGCTACTTGAGCAGTGAT 40606 || ||| | ||| || || ||||||||||| ||| || ||||| || | || Sbjct 3536 AATATCGATATTGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTAT 3595 Query 40607 TTGAGCCATAATAGCAGTTGCTACACCAATTGACTTTGGAGTCTCAATTTGAGCATTACC 40666 |||||| | ||||| |||||| |||||||| |||||| ||||||| |||||| || Sbjct 3596 TTGAGCAGTTATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCC 3655 Query 40667 AAGTTTAAATCCATTGCTGAGCATACCCTTCAAATCGACTAAGCAACAGTTAGTGAATGG 40726 | |||||| ||| ||||| || || ||||| ||||| ||| ||| | ||| Sbjct 3656 TATTTTAAAGCCACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGG 3715 Query 40727 AAGAGCTGGAGAATAGTCTAAGTCATGAAAATGAATAAGACCTTTATCATGAG---CATT 40783 || | ||| ||||| ||||| |||||| ||||||| |||||| ||||||| || Sbjct 3716 AAAAAATGGTGAATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGCGTCAAC 3775 Query 40784 TAGAACAGTAGGAGAGATAACCTGACGAGCAATGTGTTTTGAAACAATTCCTGCCATCAG 40843 || | | ||| ||| | |||| ||||| |||| || || || | || Sbjct 3776 TACGTCTTTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAA 3835 Query 40844 GTCTCGTTGAGTTGGAAAAACACGAGAATCTTTATTGGCATTCTCGTTGAGTA 40896 |||| ||||||||||| |||| ||||||||| ||||| || || |||| Sbjct 3836 ATCTCTTTGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTAGTA 3888 >seq2698 Length=11445 Score = 123 bits (136), Expect = 3e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 61351 GTGAAAGTGCGTGAAATAACGTCGCGCTGTTGCTCTGGAGTTAGAGCATTAAAACGAACG 61410 |||||||| | | |||||| || | ||||| || || |||| || ||||| | ||| Sbjct 5493 GTGAAAGTTCTGGTAATAACATCTTGTTGTTGTTCAGGTGTTAAAGAGTTAAATCTAACA 5434 Query 61411 GCATAGCCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCATCT 61470 ||||| || ||||| | ||| || | ||| || |||||||| ||||||| |||||||| Sbjct 5433 GCATATCCTGAAACCCTAATTGTTAACTGCGGGTATTTTTCAGGATGTTCTACTGCATCA 5374 Query 61471 TCTAAAGTTTCTTTAGACAGCACGTTCACGTTCAAATGCTGTCCACCTTCAACTTTAACT 61530 | |||||||| || ||||| || || ||||| ||||||||||||||| | || Sbjct 5373 AGAAGTGTTTCTTTTCGAAGAACGTTTACATTTAAATGTTGTCCACCTTCAACTCTTACA 5314 Query 61531 GTAGGCTTGGTTTCAATT 61548 ||||| | ||||||| Sbjct 5313 GTAGGACTTTCTTCAATT 5296 >seq1262 Length=72559 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 74608 TTGGTGACCCCAGCAGGACTCGAACCTGCAACCTAGCGATTATGAGTCGCGTGCTCTAAC 74667 |||||| |||| || ||||| ||||| || ||||| ||||||||||||| |||||||||| Sbjct 63817 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAAC 63876 Query 74668 CAATTGAGCTATAGGGCC 74685 ||| ||||||| ||||| Sbjct 63877 CAACTGAGCTAAGGGGCC 63894 >seq2410 Length=3205 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 74608 TTGGTGACCCCAGCAGGACTCGAACCTGCAACCTAGCGATTATGAGTCGCGTGCTCTAAC 74667 |||||| |||| || ||||| ||||| || ||||| ||||||||||||| ||||||||| Sbjct 1027 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTGCTCTAAC 968 Query 74668 CAATTGAGCTATAGGGC 74684 ||| ||||||| |||| Sbjct 967 CAACTGAGCTAAGGGGC 951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554140047817440