Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq1470 176 3e-38
seq1985 165 6e-35
seq12187 98.7 7e-15
>seq1470
Length=5781
Score = 176 bits (194), Expect = 3e-38
Identities = 434/644 (67%), Gaps = 22/644 (3%)
Strand=Plus/Minus
Query 282187 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 282246
||| | ||| ||||||||||| ||||| | ||||| || || || || | |||
Sbjct 2994 ACGTTGATCGAAATCTTCACCACCCAAATGAGTATCACCGTTGGTGGCCACCACCTCGAA 2935
Query 282247 AAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAAT 282306
| || | |||| | ||| || | |||||| || |||||||||| ||| || |
Sbjct 2934 TACACCGTTGTCAATGGTCAAGAGTGACACATCAAAAGTACCACCACCCAAATCGAATAC 2875
Query 282307 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 282366
| |||||| |||| || | | || || | ||| || || | |||||||| ||
Sbjct 2874 CAACACATTCTTTTCACCCTCCT---TCTTGTCCAAACCGTAGGCTATGGCAGCAGCGGT 2818
Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426
|| |||||||| || | || |||||||||||||||||| || || ||||| |||||
Sbjct 2817 GGGCTCATTAATGATACGCATAACATTAAGACCAGCAATAACGCCAGCGTCTTTGGTGGC 2758
Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA-CTTCTT 282485
||| | ||| | ||||||||| || || || || || | || |||| || | ||||||
Sbjct 2757 TTGACGTTGAGCATCGTTAAAGTAGGCGGGTACTGTGACCACAGCATTGGTGACCTTCTT 2698
Query 282486 TTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTT 282545
|||| || || || || | |||||||||| |||| ||| | || |||| ||
Sbjct 2697 GCCCAA-GTAGGCTTCAGCGGTGTCCTTCATTTTACCCAAAACCATGGCGGAGATTTCTT 2639
Query 282546 CTGGAGAATATTGCTTGGATTCATTTTGA--TATGATACTTCAAAATATGGTTT--ATTA 282601
| || | | | ||| | | | | || | ||| |||| || | ||| || | |
Sbjct 2638 CAGGTGCA-AACACTTTGGTACCCTGAGAAGTTTGA-ACTTGAATGTGTGGCTTGGAGTT 2581
Query 282602 CCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGG--TCAT 282659
| | || ||||| || || | |||| || || ||| ||| |||| ||||
Sbjct 2580 C--TTTTCGATCACTTTGAAGGGGAAGAATTTGATGTCATGTTG--CACATTGGCATCAT 2525
Query 282660 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTG-CA 282718
| | || | |||||| || || || ||||| || | ||||| |||||| | ||
Sbjct 2524 TCCATTCACGACCAATCAAACGCTTGGCATCGAATACTGTATTCTCTGGATTTGTGGTCA 2465
Query 282719 GCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTC---TGTAAATGAAACATAT 282775
| |||| |||||| ||||| ||||||| | |||| || ||| || |||||||
Sbjct 2464 AC-TGATTTTTGGCGGCATCACCAATCAAACGTTCACCTTCACTTGTGAAACCAACATAT 2406
Query 282776 GATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAAC 282819
|| ||||| | || ||||||||||| || ||||||||||||||
Sbjct 2405 GAGGGAGTGATACGGTTACCTTGATCGTTGGCAATAATTTCAAC 2362
>seq1985
Length=11301
Score = 165 bits (182), Expect = 6e-35
Identities = 163/211 (77%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 282343 ACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGC 282402
|||| | |||| |||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 1683 ACCAAATGCAAGTGCAGCAGCAGTTGGTTCATTTATAATTCTTTGCACATTAAGACCTGC 1624
Query 282403 AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 282462
|||| | || || ||||| || ||||| ||||| | |||||||||||| || ||||||||
Sbjct 1623 AATTTTACCAGCGTCTTTTGTTGCTTGCCTTTGAGCATCGTTAAAATAAGCTGGAACAGT 1564
Query 282463 AATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACT 282522
||||| || ||||| |||| | || | |||| | || | || |||||||||| |
Sbjct 1563 TATAACAGCGTCTGTAACTTTCTCGCCTAAATAATCTTCCGCAGCTTTTTTCATTTTAAT 1504
Query 282523 TAAAATCATTGATGAAATTTGTTCTGGAGAA 282553
|||||| | |||||||||| ||| |||
Sbjct 1503 TAAAATTTCAGCAGAAATTTGTTGTGGGGAA 1473
Score = 113 bits (124), Expect = 3e-19
Identities = 287/431 (67%), Gaps = 28/431 (6%)
Strand=Plus/Minus
Query 281385 TAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATAC 281444
|||||||||| || || | ||| |||||| ||||| ||| ||| | | |||||
Sbjct 2720 TAATAGTAATTTTATTTGCTTTATTTGTTTTCTTATCTTTGGCTTCAACACTGATAATAC 2661
Query 281445 CATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGA 281504
|||| || | ||||||||| |||||||||||||| ||||| ||||||| |
Sbjct 2660 CATTCTGGTCAATATCAAATGTAACTTCAATTTGAGGTGTCCCTCGTGGAGCAGGGTCTA 2601
Query 281505 TCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCT 281564
| ||||| ||||||||| || | |||||||| || ||||| ||| || |
Sbjct 2600 TACCTTCTAAATTAAATTCACCTAACAATTTATTATCAGAAGAACGTTTTCTTTCGCCTT 2541
Query 281565 CGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA---AATACT--CT 281619
||| | || || ||| | |||||||||| || || ||| || ||| ||
Sbjct 2540 GGAATACTTTAATTCCTACTGAATTTTGATTATC---ATCAGCCGTAGAGAACACTTGCT 2484
Query 281620 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGC 281679
||||| || |||||||| || ||| || |||| | ||||| | ||||||
Sbjct 2483 -GATTTCTT-GTTGGAATTGTCGTATTTTTAGGTATAAGAACAGTCATTACACCACCCAT 2426
Query 281680 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTC 281739
|||||| | ||||| ||| | ||| || ||||||| || | || || || | ||||
Sbjct 2425 TGTTTCAATACCAATAGATAAAGGTGTTACATCAAGAAGAAGAAGATCTT---TTGTTTC 2369
Query 281740 ATCAGTTTGACCAACAAGAATAGCTG---CTTGAATAGCAGCACCATATGCAACAGCTTC 281796
| | ||| |||| ||| |||| || || ||||| ||| || |||||
Sbjct 2368 ACCTGTT-----------AATA-CTGAACCTTGTATTGCTGCACCTAATGACACTGCTTC 2321
Query 281797 ATCAGGATTAA 281807
|||||||||||
Sbjct 2320 ATCAGGATTAA 2310
Score = 93.3 bits (102), Expect = 3e-13
Identities = 95/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 86123 ATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCAATTT 86182
||||||| || || |||||||||||||| || ||| | | |||| | ||| |||||||
Sbjct 1678 ATGCAAGTGCAGCAGCAGTTGGTTCATTTATAATTCTTTGCACATTAAGACCTGCAATTT 1619
Query 86183 TAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTAATAA 86242
|| ||| || |||||||| || || || || |||||||| ||||| ||||| ||||
Sbjct 1618 TACCAGCGTCTTTTGTTGCTTGCCTTTGAGCATCGTTAAAATAAGCTGGAACAGTTATAA 1559
Query 86243 CTGC 86246
| ||
Sbjct 1558 CAGC 1555
>seq12187
Length=3570
Score = 98.7 bits (108), Expect = 7e-15
Identities = 159/228 (70%), Gaps = 3/228 (1%)
Strand=Plus/Minus
Query 161570 TACATTTCTCCATGAGCATTTTCCATTGCATATTGGAAACCATAAGCACATTCAGCTTCT 161629
|||||||| || |||||||||| ||| ||||||||||||| ||| || ||
Sbjct 1257 TACATTTCAGAGTGCACATTTTCCATGGCAATTTGGAAACCATAAAAACAACGCGCCTCA 1198
Query 161630 TTTATTTTCACAACATCAATAAGATTTTCTTTAATATTAGCATTAACAATACCATCAGCT 161689
|||||| || | | | | | ||| | ||| |||| ||||| |||||||
Sbjct 1197 GTTATTTGTACTTCTTGGCTGAAACGCTCTACCAAATTTTCATTGACAATGCCATCAGAG 1138
Query 161690 GCCGCAAAAAATGCCAATACGTGCATAATAAAATTTCTATCATCATCGCTCAAATGATTA 161749
|| || ||||||||||| || ||| ||||||| || |||| ||| |||| ||
Sbjct 1137 GCGGCGAAAAATGCCAAAACATGCGATATAAAATGCCTCTCATTATCTGTCAA---TTTT 1081
Query 161750 TTCCAATCATTCACATCTTTTGCCAAATCCACTTCTTCAACTGTCCAA 161797
| ||| ||||||| ||| || ||||||||||| || |||||||||
Sbjct 1080 TCCCAGTCATTCATATCCTTGCATAAATCCACTTCCTCCACTGTCCAA 1033
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3739106025313074
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |