Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1470 176 3e-38 seq1985 165 6e-35 seq12187 98.7 7e-15 >seq1470 Length=5781 Score = 176 bits (194), Expect = 3e-38 Identities = 434/644 (67%), Gaps = 22/644 (3%) Strand=Plus/Minus Query 282187 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 282246 ||| | ||| ||||||||||| ||||| | ||||| || || || || | ||| Sbjct 2994 ACGTTGATCGAAATCTTCACCACCCAAATGAGTATCACCGTTGGTGGCCACCACCTCGAA 2935 Query 282247 AAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAAT 282306 | || | |||| | ||| || | |||||| || |||||||||| ||| || | Sbjct 2934 TACACCGTTGTCAATGGTCAAGAGTGACACATCAAAAGTACCACCACCCAAATCGAATAC 2875 Query 282307 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 282366 | |||||| |||| || | | || || | ||| || || | |||||||| || Sbjct 2874 CAACACATTCTTTTCACCCTCCT---TCTTGTCCAAACCGTAGGCTATGGCAGCAGCGGT 2818 Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 || |||||||| || | || |||||||||||||||||| || || ||||| ||||| Sbjct 2817 GGGCTCATTAATGATACGCATAACATTAAGACCAGCAATAACGCCAGCGTCTTTGGTGGC 2758 Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA-CTTCTT 282485 ||| | ||| | ||||||||| || || || || || | || |||| || | |||||| Sbjct 2757 TTGACGTTGAGCATCGTTAAAGTAGGCGGGTACTGTGACCACAGCATTGGTGACCTTCTT 2698 Query 282486 TTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTT 282545 |||| || || || || | |||||||||| |||| ||| | || |||| || Sbjct 2697 GCCCAA-GTAGGCTTCAGCGGTGTCCTTCATTTTACCCAAAACCATGGCGGAGATTTCTT 2639 Query 282546 CTGGAGAATATTGCTTGGATTCATTTTGA--TATGATACTTCAAAATATGGTTT--ATTA 282601 | || | | | ||| | | | | || | ||| |||| || | ||| || | | Sbjct 2638 CAGGTGCA-AACACTTTGGTACCCTGAGAAGTTTGA-ACTTGAATGTGTGGCTTGGAGTT 2581 Query 282602 CCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGG--TCAT 282659 | | || ||||| || || | |||| || || ||| ||| |||| |||| Sbjct 2580 C--TTTTCGATCACTTTGAAGGGGAAGAATTTGATGTCATGTTG--CACATTGGCATCAT 2525 Query 282660 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTG-CA 282718 | | || | |||||| || || || ||||| || | ||||| |||||| | || Sbjct 2524 TCCATTCACGACCAATCAAACGCTTGGCATCGAATACTGTATTCTCTGGATTTGTGGTCA 2465 Query 282719 GCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTC---TGTAAATGAAACATAT 282775 | |||| |||||| ||||| ||||||| | |||| || ||| || ||||||| Sbjct 2464 AC-TGATTTTTGGCGGCATCACCAATCAAACGTTCACCTTCACTTGTGAAACCAACATAT 2406 Query 282776 GATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAAC 282819 || ||||| | || ||||||||||| || |||||||||||||| Sbjct 2405 GAGGGAGTGATACGGTTACCTTGATCGTTGGCAATAATTTCAAC 2362 >seq1985 Length=11301 Score = 165 bits (182), Expect = 6e-35 Identities = 163/211 (77%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 282343 ACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGC 282402 |||| | |||| |||||||||||||||||||| |||||||| ||||||||||| || Sbjct 1683 ACCAAATGCAAGTGCAGCAGCAGTTGGTTCATTTATAATTCTTTGCACATTAAGACCTGC 1624 Query 282403 AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 282462 |||| | || || ||||| || ||||| ||||| | |||||||||||| || |||||||| Sbjct 1623 AATTTTACCAGCGTCTTTTGTTGCTTGCCTTTGAGCATCGTTAAAATAAGCTGGAACAGT 1564 Query 282463 AATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACT 282522 ||||| || ||||| |||| | || | |||| | || | || |||||||||| | Sbjct 1563 TATAACAGCGTCTGTAACTTTCTCGCCTAAATAATCTTCCGCAGCTTTTTTCATTTTAAT 1504 Query 282523 TAAAATCATTGATGAAATTTGTTCTGGAGAA 282553 |||||| | |||||||||| ||| ||| Sbjct 1503 TAAAATTTCAGCAGAAATTTGTTGTGGGGAA 1473 Score = 113 bits (124), Expect = 3e-19 Identities = 287/431 (67%), Gaps = 28/431 (6%) Strand=Plus/Minus Query 281385 TAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATAC 281444 |||||||||| || || | ||| |||||| ||||| ||| ||| | | ||||| Sbjct 2720 TAATAGTAATTTTATTTGCTTTATTTGTTTTCTTATCTTTGGCTTCAACACTGATAATAC 2661 Query 281445 CATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGA 281504 |||| || | ||||||||| |||||||||||||| ||||| ||||||| | Sbjct 2660 CATTCTGGTCAATATCAAATGTAACTTCAATTTGAGGTGTCCCTCGTGGAGCAGGGTCTA 2601 Query 281505 TCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCT 281564 | ||||| ||||||||| || | |||||||| || ||||| ||| || | Sbjct 2600 TACCTTCTAAATTAAATTCACCTAACAATTTATTATCAGAAGAACGTTTTCTTTCGCCTT 2541 Query 281565 CGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA---AATACT--CT 281619 ||| | || || ||| | |||||||||| || || ||| || ||| || Sbjct 2540 GGAATACTTTAATTCCTACTGAATTTTGATTATC---ATCAGCCGTAGAGAACACTTGCT 2484 Query 281620 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGC 281679 ||||| || |||||||| || ||| || |||| | ||||| | |||||| Sbjct 2483 -GATTTCTT-GTTGGAATTGTCGTATTTTTAGGTATAAGAACAGTCATTACACCACCCAT 2426 Query 281680 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTC 281739 |||||| | ||||| ||| | ||| || ||||||| || | || || || | |||| Sbjct 2425 TGTTTCAATACCAATAGATAAAGGTGTTACATCAAGAAGAAGAAGATCTT---TTGTTTC 2369 Query 281740 ATCAGTTTGACCAACAAGAATAGCTG---CTTGAATAGCAGCACCATATGCAACAGCTTC 281796 | | ||| |||| ||| |||| || || ||||| ||| || ||||| Sbjct 2368 ACCTGTT-----------AATA-CTGAACCTTGTATTGCTGCACCTAATGACACTGCTTC 2321 Query 281797 ATCAGGATTAA 281807 ||||||||||| Sbjct 2320 ATCAGGATTAA 2310 Score = 93.3 bits (102), Expect = 3e-13 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 86123 ATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCAATTT 86182 ||||||| || || |||||||||||||| || ||| | | |||| | ||| ||||||| Sbjct 1678 ATGCAAGTGCAGCAGCAGTTGGTTCATTTATAATTCTTTGCACATTAAGACCTGCAATTT 1619 Query 86183 TAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTAATAA 86242 || ||| || |||||||| || || || || |||||||| ||||| ||||| |||| Sbjct 1618 TACCAGCGTCTTTTGTTGCTTGCCTTTGAGCATCGTTAAAATAAGCTGGAACAGTTATAA 1559 Query 86243 CTGC 86246 | || Sbjct 1558 CAGC 1555 >seq12187 Length=3570 Score = 98.7 bits (108), Expect = 7e-15 Identities = 159/228 (70%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 161570 TACATTTCTCCATGAGCATTTTCCATTGCATATTGGAAACCATAAGCACATTCAGCTTCT 161629 |||||||| || |||||||||| ||| ||||||||||||| ||| || || Sbjct 1257 TACATTTCAGAGTGCACATTTTCCATGGCAATTTGGAAACCATAAAAACAACGCGCCTCA 1198 Query 161630 TTTATTTTCACAACATCAATAAGATTTTCTTTAATATTAGCATTAACAATACCATCAGCT 161689 |||||| || | | | | | ||| | ||| |||| ||||| ||||||| Sbjct 1197 GTTATTTGTACTTCTTGGCTGAAACGCTCTACCAAATTTTCATTGACAATGCCATCAGAG 1138 Query 161690 GCCGCAAAAAATGCCAATACGTGCATAATAAAATTTCTATCATCATCGCTCAAATGATTA 161749 || || ||||||||||| || ||| ||||||| || |||| ||| |||| || Sbjct 1137 GCGGCGAAAAATGCCAAAACATGCGATATAAAATGCCTCTCATTATCTGTCAA---TTTT 1081 Query 161750 TTCCAATCATTCACATCTTTTGCCAAATCCACTTCTTCAACTGTCCAA 161797 | ||| ||||||| ||| || ||||||||||| || ||||||||| Sbjct 1080 TCCCAGTCATTCATATCCTTGCATAAATCCACTTCCTCCACTGTCCAA 1033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739106025313074