Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_023681.1
Length=152710
Score E
Sequences producing significant alignments: (Bits) Value
seq4853 134 1e-26
seq2021 134 1e-26
>seq4853
Length=2014
Score = 134 bits (148), Expect = 1e-26
Identities = 246/360 (68%), Gaps = 3/360 (1%)
Strand=Plus/Plus
Query 151100 AATGCATCGGCCAAACCTTGAATGCCTATGCCGATGGGACGATGGCGCATATTAGAtttt 151159
|||||||| || || ||||| | || || || ||||||||||| |||||||| ||
Sbjct 309 AATGCATCTGCGAATCCTTGTACTCCAATACCTATGGGACGATGACGCATATTTGAACGC 368
Query 151160 tttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCAAACTATTCACTACA 151219
|| || | |||||| ||||| || || ||||| |||||| || ||||
Sbjct 369 TTGGCCTCCGGCAGCGGGTAGTAATTGATGTCTATGATTTTGTTCAAATTACGTGTTACA 428
Query 151220 TGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAGTATCATTA---TTGATATATTTA 151276
||| | || | | | || ||||||| |||| | | |||| | | ||
Sbjct 429 ATTTTAGCAACTTCTTTGAGTTTTTTAAAATCATAAGTCTTGTCTGGGTTGACAAACATA 488
Query 151277 TTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACT 151336
|||| ||||| || |||| |||||| || ||| |||| || || || |||||| |||
Sbjct 489 TTGAGTGCAATTGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTACA 548
Query 151337 ATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGG 151396
||||| | || ||||||||||| || || || ||| |||||| || |||||
Sbjct 549 ATTTCAGTGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGA 608
Query 151397 TTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATAATG 151456
|| ||||| ||||| || | ||| || || ||||| ||||| ||||| |||||||||
Sbjct 609 TTACAAGCATCCTTATAGAGCATATATGGAGTGCCAGTTTCCACTTGAGCCTCTATAATG 668
>seq2021
Length=2943
Score = 134 bits (148), Expect = 1e-26
Identities = 246/360 (68%), Gaps = 3/360 (1%)
Strand=Plus/Minus
Query 151100 AATGCATCGGCCAAACCTTGAATGCCTATGCCGATGGGACGATGGCGCATATTAGAtttt 151159
|||||||| || || ||||| | ||| || || ||||||||||| |||||||| ||
Sbjct 1403 AATGCATCTGCGAATCCTTGTACGCCAATACCTATGGGACGATGACGCATATTTGAACGC 1344
Query 151160 tttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCAAACTATTCACTACA 151219
|| || | |||||| ||||| || || ||||| |||||| || ||||
Sbjct 1343 TTGGCCTCCGGCAGCGGGTAGTAATTGATGTCTATGATTTTGTTCAAATTACGTGTTACA 1284
Query 151220 TGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAGTATCATTA---TTGATATATTTA 151276
||| | || | | | || ||||||| |||| | | |||| | | ||
Sbjct 1283 ATTTTAGCAACTTCTTTGAGTTTTTTAAAATCATAAGTCTTGTCTGGGTTGACAAACATA 1224
Query 151277 TTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACT 151336
|||| ||||| || |||| |||||| || ||| |||| || || || |||||| |||
Sbjct 1223 TTGAGTGCAATTGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTACA 1164
Query 151337 ATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGG 151396
||||| | || ||||||||||| || || || ||| |||||| || |||||
Sbjct 1163 ATTTCAGTGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGA 1104
Query 151397 TTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATAATG 151456
|| ||||| ||||| || | ||| || || ||||| ||||| | ||| |||||||||
Sbjct 1103 TTACAAGCATCCTTATAGAGCATATATGGAGTGCCAGTTTCCACCTGAGCCTCTATAATG 1044
Score = 86.0 bits (94), Expect = 6e-12
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 150371 ACGGTAAATTGCTGCGAATTGGCCGCCGGAAGTGTGCGAAAATAGTACATGCCGGTTTTG 150430
|| |||||||| | |||||| || || ||||| ||||| ||||| ||||| ||
Sbjct 2146 ACAGTAAATTGTATAGCATTGGCAGCTGGCTTCGTGCGCAAATAATACATACCGGTCTTC 2087
Query 150431 AGGCCGCGCTTCCAACCGTACATGTGCACCGACGCCATTTTAGGCAAAGTAGGGTTTGCC 150490
| ||| ||||||||||| | || | || | || |||| || | || | |||
Sbjct 2086 AAGCCTGCTTTCCAACCGTAGAAATGTATGGATGTCAGTTTACCATAATTCGGCTCAGCC 2027
Query 150491 ATGTACACGTTGAACGATTGACTTTGATCGATAAATGCTCCCCTGTCTGCTGCCATTTCA 150550
| | | ||| ||||||||||||||||| ||||| || || | || |||||||||| |
Sbjct 2026 ACATGTATGTTAAACGATTGACTTTGATCTATAAAAGCACCACGATCAGCTGCCATTTTA 1967
Query 150551 AT 150552
||
Sbjct 1966 AT 1965
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 488354389966800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |