Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_023688.1 Length=222006 Score E Sequences producing significant alignments: (Bits) Value seq2789 224 1e-53 >seq2789 Length=15484 Score = 224 bits (248), Expect = 1e-53 Identities = 1157/1818 (64%), Gaps = 47/1818 (3%) Strand=Plus/Plus Query 27253 AAATGTTTAACACGTTTTTGCACTTCGTCCTGCTTGCCGGCATTAAATGCGCGAGAACCG 27312 ||||| ||||| | |||| ||||| || || || || |||||| | | ||| | Sbjct 2100 AAATGCTTAACTCTACTTTGAACTTCTTCTTGTTTTCCTTTATTAAACGGCCTTGAATCA 2159 Query 27313 GGGTTCCCCAAATAACCGCAGACGCGACGAATAACGTTCATTTTGGTATCATCATGATTG 27372 ||| | || ||||| || || || | | || || | ||| | |||||||||| Sbjct 2160 GGGCTACCTAAATATCCACATACTCTTCTTATCACAGATACTTTTCTTGCATCATGATTA 2219 Query 27373 CCGCACTTAGGACATTCATATCCTTTAGATGTAGCAGTGAA-TTCGCCGTGATAACCGCA 27431 || || ||||||| | | || ||| ||| ||| | || |||||| | ||| || || Sbjct 2220 CCACAACTAGGACAAGAAAAACCCTTACTTGT-GCAATCAAATTCGCCTTTATATCCACA 2278 Query 27432 TTCAAAACAAACATCAACTGGGGTATTGGTCCCATAATACGGGGTATTCCTATAAGCATA 27491 |||| |||| | |||| ||| ||||| || |||||||| || | ||||| | | Sbjct 2279 TTCATAACACTCGTCAATTGGAGTATTTGTTCCATAATAAGGCACAAATTTATAACTAAA 2338 Query 27492 ATCCCAAACATCTTCGAGAGCTTTCAGATTATCTTTCATATTCGGATATTCACCGTATGA 27551 ||||||||||||||| | ||||| | ||| | | ||||||| |||||||||||||| | Sbjct 2339 ATCCCAAACATCTTCTAATGCTTTAATATTTTTTCTCATATTAGGATATTCACCGTAACA 2398 Query 27552 AATAAAACCACCAGAACTAAG--CGGAATGAATTGCTTTTCAAAATCGATCTTGTCATAC 27609 |||||| |||||| || | | || || ||||||||| || || ||||| Sbjct 2399 AATAAAGCCACCATTTGCAAATTCTGGAT--ATGATTTTTCAAAAAGAATTTTTTCATAT 2456 Query 27610 GGATTTGT--ATTATGACGAACGTCCAGATGGAAACTGTTGGTATAATAATCCTTATCA- 27666 |||||| ||| | ||| |||| |||||||| || |||||||||| ||| || Sbjct 2457 GGATTTACTGATTTTTT--AACATCCAAGTGGAAACTATTTGTATAATAATTCTTGTCTG 2514 Query 27667 -AAGA--TTTTATGATTCGGATATTTTTCACTGTCAATCTTCGCGAAA-CGATAGCACAG 27722 || | ||| || || | | ||| || | || | || || ||| | || || || Sbjct 2515 TAACACCTTTAATAATGCCAA-ATTCTTTTTTATCTAA-TTGGCAAAATCTATCACAAAG 2572 Query 27723 ACTTTCAGACGGAGTACCGTACAAACTGAATGCTAAACCGGTTTCAGCTTTCCAAGAGTC 27782 | ||||| || || | || ||||| || | | || |||||| |||||| || Sbjct 2573 ATTTTCACTTGGCGTGCTATATAAACTAAAACCATATCCTGTTTCATTTTTCCAGCTATC 2632 Query 27783 AACAAGTTCTTTCA---TTCGAGCAAGAACTGCCAGCGCAAAAGTCTGCTTCTCTTTATT 27839 || ||| | | || | ||| || | | | ||||| ||| || |||| ||| Sbjct 2633 TACTGCCTCTCTTAATTTTTTAACAATAAATA--ATC-CAAAATTCTTTTTATCTTCATT 2689 Query 27840 TTCCATGATATGTTCGCTAATGCTTGAC-ATCATG-ATTTCGGTAACT---TCATGCATA 27894 || | |||||||| || || || |||| ||| | ||||| |||| || Sbjct 2690 GTCAAACATATGTTC-----TGATTCACTATCAAACATTGCATTAACTGCTTCATTTATT 2744 Query 27895 CCGATGTAACCGATACTAACAGATGCGCGACCGTTGTCAAATGCTTTCATGATATCGTCA 27954 || || || || | || ||||| | || || | ||| || || ||||| || Sbjct 2745 CCTATATAGCCTAATGAAATTGATGCTCTTCCATTTTTAAAAATTTCAATAATATCATCT 2804 Query 27955 TCTGGGTTCAGACGAACACCACAAGCACCTTCAACGTAAAGAATCGGAGCGACGCTGGCT 28014 ||||| || || | | || |||||||||||| || | || || || || | ||| Sbjct 2805 TCTGGATTAAGTCTTATTCCGCAAGCACCTTCAGTATACAATATGGGGGCAACCTTAGCT 2864 Query 28015 TTAACGCCACGCAGACGATCAACGCGAGCCATCAAAGCTTGCTTGGTGATTTCCATACGT 28074 || || || || | |||| | | ||| || | || || | || | | | | Sbjct 2865 TTTACACCTTTGAGCCTTTCAATTCTTGTCATTAATGATTTTTTAGCAATATTTAATCTT 2924 Query 28075 TCTTCCAGAAGATCCCAGAAACGCAT--AGGATTGCCATTT---GAATCAAGAGCGATTC 28129 | ||| | | || | || | | ||| ||| | | |||| || |||| Sbjct 2925 TTTTCTA--ATATAAAATTAAATTTTTCAAAATTACCACATCCTGCTTCAATTGCTATTC 2982 Query 28130 GCGGCAAGTTCAGAGTGACCACACCCAAGTTGTTACGGCCTTCATGAACTTCAACACCGT 28189 || | || | | | |||||||| || || || | || || |||| | ||| | Sbjct 2983 TGGGAATATTTAAACTAACCACACCTAAATTATTTCTTCCATCGTGAATACTATTACCAT 3042 Query 28190 TTTCGTCTTCCCAGCGATGCAAGAAACTACGGCATCCCATTGGGAATTTGAAACTACCAG 28249 |||| ||||| | | | ||| || | ||| |||||||| || || ||||| Sbjct 3043 TTTCATCTTCATAAACAGAAAGGAAGCTTCTGCACCCCATTGGCGTCTTAAAGGAACCAG 3102 Query 28250 TCACTTCAACGATCTTATCATAGCTCAGAATGTCCGGATACATACGTTTCGCAGCGCATT 28309 | ||| | | ||||| | | ||| || |||||||| |||| | | |||| Sbjct 3103 TTGTCCTAACAACTTGCTCATAATTTAAAATATCAGGATACATTCGTTGTGTTGAACATT 3162 Query 28310 CCAGAGCCAACTGTTTGATACGATACAGCGGATCAGTCGGG-TTCAAGTTGTGTCCGTCT 28368 | || |||| ||||| ||| ||| ||||| | ||| | |||| || ||| Sbjct 3163 CAAGCGCCAGTTGTTTTATATCATAATTAGGATCGCTATTAATTCTATTTGTC-CCTTCT 3221 Query 28369 TTCAGAGCGAATACCAGTTTCGGGAAAACAGGGGTGATACCCTCTTTACCAAGACCAGCC 28428 || | || || || ||||| || || || | || | | ||| || | ||| Sbjct 3222 TTTATGGCAAAAACAAGTTTTGGAAATACTGCCGTTTTTTTATTTTTTCCTAACCCATTT 3281 Query 28429 AAACGAACTTTCAGGATTGCTTCTTGAATCAGTTCTGACTCCCAGCTAGTACCAAGACCA 28488 | | | | | |||| || |||||| | | | ||| || | ||||| ||| Sbjct 3282 ATTCTGTTTCTTAATATTGATTTTTGAATTAATCTTTCCTCTTTTGTAATTCCAAGTCCA 3341 Query 28489 AAGCCGAAGGTACAGAACGGAGTTTGACCATTTGCGGAGTGCAGAGTGTTGACCTCATAC 28548 || || || ||| || || ||||| |||||||||| |||| ||| || | ||||| Sbjct 3342 AAACCAAAAGTAACAAATGGGGTTTGTCCATTTGCGGTATGCAAAGTATTAATTTCATAT 3401 Query 28549 TCCAGACCTTGCATAGCATCATATACAG-CTTTGCGAGTCTTTGCAATAGCATATTGCTG 28607 || | ||||| | ||||||| | ||| |||| | | ||| || || |||||| | Sbjct 3402 TCTAATCCTTGAAAAGCATCAAA-ACATTCTTTTTCAATTTTTTCATTAACATATTTATC 3460 Query 28608 TTGATCTGGAATTTTCCAGTAACGAGCTTCATCCAAGTGCTTTTCGTGTGTCATTTTAAC 28667 | ||| || || || | | | ||| | | |||| | | ||| || Sbjct 3461 TGGATTGGGGATATTATATTTTTCTGTTTCTTTAATTAACTTTATTTCAGAAGCTTTTAC 3520 Query 28668 ATACGGTGCCAGCACTTCGTCAATGCGATTGATTGTGTTACCGCCATAAATGTGACTTGC 28727 ||| || || | | || || || || || | || |||||| | |||||||| Sbjct 3521 ATAAGGGGCTAAAATAATATCGATATTGTTAATCGTTGTTCCACCATAAGTATGACTTGC 3580 Query 28728 TACTTGAGCGATGATTTGAGCAATCACGGCAGCAGCGGTAGAAATGCTTTTCGGAGTCTC 28787 ||||| || || ||||||||| | | || | || || ||| ||||| || Sbjct 3581 GACTTGCGCTATTATTTGAGCAGTTATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTC 3640 Query 28788 GATTTGAGCATTACCCATTCTGAAACCACGTTTCAACATTCCTTCAACATCTATCAACAT 28847 |||| |||||| || ||| | || |||| || | |||||||| | ||| | ||||| Sbjct 3641 AATTTCAGCATTTCCTATTTTAAAGCCACCTTCAAGCATTCCTTTTAAATCAACTAACAT 3700 Query 28848 GCAGTTAAACATTGGGAAGAACGGTGAATAATCAAGATCGTGGAAGTGAATCCAACCATT 28907 || ||||||||||| || || ||||||||||| | ||| || | ||||| ||| || Sbjct 3701 ACAATTAAACATTGGAAAAAATGGTGAATAATCTAAATCATGATAATGAATTTCACCTTT 3760 Query 28908 TTCGTGTGCTTGCATAACTTCAACAGGCAG---ATAATGCTTGGCGAAATGCTTACTAAC 28964 ||| || || | | || || || || || || || || |||| ||| || Sbjct 3761 TTCATGAGCGTCAACTACGTCTTTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAAT 3820 Query 28965 GATACCAGCTACCAAATCGCGTTGAGTTGGAATTACCTTGGCGTCTTTGTTTGCATTTTC 29024 |||||||||| |||||| | |||||||||||| || ||| ||||| || |||||||| Sbjct 3821 TATACCAGCTAACAAATCTCTTTGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTC 3880 Query 29025 ATTCATGATTGATTCATC 29042 ||| | || |||| ||| Sbjct 3881 ATTTAGTATGGATTTATC 3898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710015527106640