Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_023688.1
Length=222006
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 224 1e-53
>seq2789
Length=15484
Score = 224 bits (248), Expect = 1e-53
Identities = 1157/1818 (64%), Gaps = 47/1818 (3%)
Strand=Plus/Plus
Query 27253 AAATGTTTAACACGTTTTTGCACTTCGTCCTGCTTGCCGGCATTAAATGCGCGAGAACCG 27312
||||| ||||| | |||| ||||| || || || || |||||| | | ||| |
Sbjct 2100 AAATGCTTAACTCTACTTTGAACTTCTTCTTGTTTTCCTTTATTAAACGGCCTTGAATCA 2159
Query 27313 GGGTTCCCCAAATAACCGCAGACGCGACGAATAACGTTCATTTTGGTATCATCATGATTG 27372
||| | || ||||| || || || | | || || | ||| | ||||||||||
Sbjct 2160 GGGCTACCTAAATATCCACATACTCTTCTTATCACAGATACTTTTCTTGCATCATGATTA 2219
Query 27373 CCGCACTTAGGACATTCATATCCTTTAGATGTAGCAGTGAA-TTCGCCGTGATAACCGCA 27431
|| || ||||||| | | || ||| ||| ||| | || |||||| | ||| || ||
Sbjct 2220 CCACAACTAGGACAAGAAAAACCCTTACTTGT-GCAATCAAATTCGCCTTTATATCCACA 2278
Query 27432 TTCAAAACAAACATCAACTGGGGTATTGGTCCCATAATACGGGGTATTCCTATAAGCATA 27491
|||| |||| | |||| ||| ||||| || |||||||| || | ||||| | |
Sbjct 2279 TTCATAACACTCGTCAATTGGAGTATTTGTTCCATAATAAGGCACAAATTTATAACTAAA 2338
Query 27492 ATCCCAAACATCTTCGAGAGCTTTCAGATTATCTTTCATATTCGGATATTCACCGTATGA 27551
||||||||||||||| | ||||| | ||| | | ||||||| |||||||||||||| |
Sbjct 2339 ATCCCAAACATCTTCTAATGCTTTAATATTTTTTCTCATATTAGGATATTCACCGTAACA 2398
Query 27552 AATAAAACCACCAGAACTAAG--CGGAATGAATTGCTTTTCAAAATCGATCTTGTCATAC 27609
|||||| |||||| || | | || || ||||||||| || || |||||
Sbjct 2399 AATAAAGCCACCATTTGCAAATTCTGGAT--ATGATTTTTCAAAAAGAATTTTTTCATAT 2456
Query 27610 GGATTTGT--ATTATGACGAACGTCCAGATGGAAACTGTTGGTATAATAATCCTTATCA- 27666
|||||| ||| | ||| |||| |||||||| || |||||||||| ||| ||
Sbjct 2457 GGATTTACTGATTTTTT--AACATCCAAGTGGAAACTATTTGTATAATAATTCTTGTCTG 2514
Query 27667 -AAGA--TTTTATGATTCGGATATTTTTCACTGTCAATCTTCGCGAAA-CGATAGCACAG 27722
|| | ||| || || | | ||| || | || | || || ||| | || || ||
Sbjct 2515 TAACACCTTTAATAATGCCAA-ATTCTTTTTTATCTAA-TTGGCAAAATCTATCACAAAG 2572
Query 27723 ACTTTCAGACGGAGTACCGTACAAACTGAATGCTAAACCGGTTTCAGCTTTCCAAGAGTC 27782
| ||||| || || | || ||||| || | | || |||||| |||||| ||
Sbjct 2573 ATTTTCACTTGGCGTGCTATATAAACTAAAACCATATCCTGTTTCATTTTTCCAGCTATC 2632
Query 27783 AACAAGTTCTTTCA---TTCGAGCAAGAACTGCCAGCGCAAAAGTCTGCTTCTCTTTATT 27839
|| ||| | | || | ||| || | | | ||||| ||| || |||| |||
Sbjct 2633 TACTGCCTCTCTTAATTTTTTAACAATAAATA--ATC-CAAAATTCTTTTTATCTTCATT 2689
Query 27840 TTCCATGATATGTTCGCTAATGCTTGAC-ATCATG-ATTTCGGTAACT---TCATGCATA 27894
|| | |||||||| || || || |||| ||| | ||||| |||| ||
Sbjct 2690 GTCAAACATATGTTC-----TGATTCACTATCAAACATTGCATTAACTGCTTCATTTATT 2744
Query 27895 CCGATGTAACCGATACTAACAGATGCGCGACCGTTGTCAAATGCTTTCATGATATCGTCA 27954
|| || || || | || ||||| | || || | ||| || || ||||| ||
Sbjct 2745 CCTATATAGCCTAATGAAATTGATGCTCTTCCATTTTTAAAAATTTCAATAATATCATCT 2804
Query 27955 TCTGGGTTCAGACGAACACCACAAGCACCTTCAACGTAAAGAATCGGAGCGACGCTGGCT 28014
||||| || || | | || |||||||||||| || | || || || || | |||
Sbjct 2805 TCTGGATTAAGTCTTATTCCGCAAGCACCTTCAGTATACAATATGGGGGCAACCTTAGCT 2864
Query 28015 TTAACGCCACGCAGACGATCAACGCGAGCCATCAAAGCTTGCTTGGTGATTTCCATACGT 28074
|| || || || | |||| | | ||| || | || || | || | | | |
Sbjct 2865 TTTACACCTTTGAGCCTTTCAATTCTTGTCATTAATGATTTTTTAGCAATATTTAATCTT 2924
Query 28075 TCTTCCAGAAGATCCCAGAAACGCAT--AGGATTGCCATTT---GAATCAAGAGCGATTC 28129
| ||| | | || | || | | ||| ||| | | |||| || ||||
Sbjct 2925 TTTTCTA--ATATAAAATTAAATTTTTCAAAATTACCACATCCTGCTTCAATTGCTATTC 2982
Query 28130 GCGGCAAGTTCAGAGTGACCACACCCAAGTTGTTACGGCCTTCATGAACTTCAACACCGT 28189
|| | || | | | |||||||| || || || | || || |||| | ||| |
Sbjct 2983 TGGGAATATTTAAACTAACCACACCTAAATTATTTCTTCCATCGTGAATACTATTACCAT 3042
Query 28190 TTTCGTCTTCCCAGCGATGCAAGAAACTACGGCATCCCATTGGGAATTTGAAACTACCAG 28249
|||| ||||| | | | ||| || | ||| |||||||| || || |||||
Sbjct 3043 TTTCATCTTCATAAACAGAAAGGAAGCTTCTGCACCCCATTGGCGTCTTAAAGGAACCAG 3102
Query 28250 TCACTTCAACGATCTTATCATAGCTCAGAATGTCCGGATACATACGTTTCGCAGCGCATT 28309
| ||| | | ||||| | | ||| || |||||||| |||| | | ||||
Sbjct 3103 TTGTCCTAACAACTTGCTCATAATTTAAAATATCAGGATACATTCGTTGTGTTGAACATT 3162
Query 28310 CCAGAGCCAACTGTTTGATACGATACAGCGGATCAGTCGGG-TTCAAGTTGTGTCCGTCT 28368
| || |||| ||||| ||| ||| ||||| | ||| | |||| || |||
Sbjct 3163 CAAGCGCCAGTTGTTTTATATCATAATTAGGATCGCTATTAATTCTATTTGTC-CCTTCT 3221
Query 28369 TTCAGAGCGAATACCAGTTTCGGGAAAACAGGGGTGATACCCTCTTTACCAAGACCAGCC 28428
|| | || || || ||||| || || || | || | | ||| || | |||
Sbjct 3222 TTTATGGCAAAAACAAGTTTTGGAAATACTGCCGTTTTTTTATTTTTTCCTAACCCATTT 3281
Query 28429 AAACGAACTTTCAGGATTGCTTCTTGAATCAGTTCTGACTCCCAGCTAGTACCAAGACCA 28488
| | | | | |||| || |||||| | | | ||| || | ||||| |||
Sbjct 3282 ATTCTGTTTCTTAATATTGATTTTTGAATTAATCTTTCCTCTTTTGTAATTCCAAGTCCA 3341
Query 28489 AAGCCGAAGGTACAGAACGGAGTTTGACCATTTGCGGAGTGCAGAGTGTTGACCTCATAC 28548
|| || || ||| || || ||||| |||||||||| |||| ||| || | |||||
Sbjct 3342 AAACCAAAAGTAACAAATGGGGTTTGTCCATTTGCGGTATGCAAAGTATTAATTTCATAT 3401
Query 28549 TCCAGACCTTGCATAGCATCATATACAG-CTTTGCGAGTCTTTGCAATAGCATATTGCTG 28607
|| | ||||| | ||||||| | ||| |||| | | ||| || || |||||| |
Sbjct 3402 TCTAATCCTTGAAAAGCATCAAA-ACATTCTTTTTCAATTTTTTCATTAACATATTTATC 3460
Query 28608 TTGATCTGGAATTTTCCAGTAACGAGCTTCATCCAAGTGCTTTTCGTGTGTCATTTTAAC 28667
| ||| || || || | | | ||| | | |||| | | ||| ||
Sbjct 3461 TGGATTGGGGATATTATATTTTTCTGTTTCTTTAATTAACTTTATTTCAGAAGCTTTTAC 3520
Query 28668 ATACGGTGCCAGCACTTCGTCAATGCGATTGATTGTGTTACCGCCATAAATGTGACTTGC 28727
||| || || | | || || || || || | || |||||| | ||||||||
Sbjct 3521 ATAAGGGGCTAAAATAATATCGATATTGTTAATCGTTGTTCCACCATAAGTATGACTTGC 3580
Query 28728 TACTTGAGCGATGATTTGAGCAATCACGGCAGCAGCGGTAGAAATGCTTTTCGGAGTCTC 28787
||||| || || ||||||||| | | || | || || ||| ||||| ||
Sbjct 3581 GACTTGCGCTATTATTTGAGCAGTTATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTC 3640
Query 28788 GATTTGAGCATTACCCATTCTGAAACCACGTTTCAACATTCCTTCAACATCTATCAACAT 28847
|||| |||||| || ||| | || |||| || | |||||||| | ||| | |||||
Sbjct 3641 AATTTCAGCATTTCCTATTTTAAAGCCACCTTCAAGCATTCCTTTTAAATCAACTAACAT 3700
Query 28848 GCAGTTAAACATTGGGAAGAACGGTGAATAATCAAGATCGTGGAAGTGAATCCAACCATT 28907
|| ||||||||||| || || ||||||||||| | ||| || | ||||| ||| ||
Sbjct 3701 ACAATTAAACATTGGAAAAAATGGTGAATAATCTAAATCATGATAATGAATTTCACCTTT 3760
Query 28908 TTCGTGTGCTTGCATAACTTCAACAGGCAG---ATAATGCTTGGCGAAATGCTTACTAAC 28964
||| || || | | || || || || || || || || |||| ||| ||
Sbjct 3761 TTCATGAGCGTCAACTACGTCTTTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAAT 3820
Query 28965 GATACCAGCTACCAAATCGCGTTGAGTTGGAATTACCTTGGCGTCTTTGTTTGCATTTTC 29024
|||||||||| |||||| | |||||||||||| || ||| ||||| || ||||||||
Sbjct 3821 TATACCAGCTAACAAATCTCTTTGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTC 3880
Query 29025 ATTCATGATTGATTCATC 29042
||| | || |||| |||
Sbjct 3881 ATTTAGTATGGATTTATC 3898
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 710015527106640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |