Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_023693.1 Length=148612 Score E Sequences producing significant alignments: (Bits) Value seq2305 82.4 7e-11 >seq2305 Length=5865 Score = 82.4 bits (90), Expect = 7e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 52511 TCGTTAGCTTAGTTGGTAGAGCAAGGGTCTTTTAACTCCAAGGTCGAAGGTTCGAATCCT 52570 ||||||||| ||||||||||||||| | ||||||| |||||||| ||||||||| ||| Sbjct 4452 TCGTTAGCTCAGTTGGTAGAGCAAGAGACTTTTAATCTCAAGGTCGTAGGTTCGAACCCT 4511 Query 52571 TCACGATGTACCAAA 52585 ||||| |||||| Sbjct 4512 ACACGACACACCAAA 4526 Score = 82.4 bits (90), Expect = 7e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 52511 TCGTTAGCTTAGTTGGTAGAGCAAGGGTCTTTTAACTCCAAGGTCGAAGGTTCGAATCCT 52570 ||||||||| ||||||||||||||| | ||||||| |||||||| ||||||||| ||| Sbjct 4955 TCGTTAGCTCAGTTGGTAGAGCAAGAGACTTTTAATCTCAAGGTCGTAGGTTCGAACCCT 5014 Query 52571 TCACGATGTACCAAA 52585 ||||| |||||| Sbjct 5015 ACACGACACACCAAA 5029 Score = 82.4 bits (90), Expect = 7e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 52511 TCGTTAGCTTAGTTGGTAGAGCAAGGGTCTTTTAACTCCAAGGTCGAAGGTTCGAATCCT 52570 ||||||||| ||||||||||||||| | ||||||| |||||||| ||||||||| ||| Sbjct 5207 TCGTTAGCTCAGTTGGTAGAGCAAGAGACTTTTAATCTCAAGGTCGTAGGTTCGAACCCT 5266 Query 52571 TCACGATGTACCAAA 52585 ||||| |||||| Sbjct 5267 ACACGACACACCAAA 5281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475245879518880