Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq2789 156 1e-32 seq6137 109 2e-18 seq982 84.2 7e-11 >seq2789 Length=15484 Score = 156 bits (172), Expect = 1e-32 Identities = 593/915 (65%), Gaps = 47/915 (5%) Strand=Plus/Plus Query 188684 CAGTTTATAATCATTATAAGCGCATTAATGCTCTTAATGaaaaatcaaaaaatgatgatg 188743 |||| || ||||||||||| || |||||| | | ||||| | ||||| || Sbjct 7509 CAGTATACAATCATTATAAACGAATTAATTCAATCGATGAAGAT------AATGACATTG 7562 Query 188744 gagtaaagatcaaaaaaTCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACAT 188803 | || || ||||| || || | | | || |||||||| | ||||| || | Sbjct 7563 AA------ATTAACAAATCAAACGTATTAATTATCGGGCCTACTGGAACTGGTAAGACTT 7616 Query 188804 TATTTGCTCAAACATTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTT 188863 || | || || | | ||| | | ||| || ||||| | | || | ||||| || | Sbjct 7617 TACTAGCGGAATCTATTGCTAAAAAATTAGATTTACCTTTTGTAATTGCCGATGCGACAT 7676 Query 188864 CTTTAACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAACGT-ATTGCTTCGTT--TAA 188920 || | || ||||||||||| |||||||||||||| ||| | | ||| || || | | Sbjct 7677 CTATTACCGAAGCTGGTTACGTAGGTGAAGATGTTGAACAAATGATTTCTAAATTACTCA 7736 Query 188921 TCCAAGCAGCTGATTACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAG 188980 | |||||| || | |||||| || || ||||| || ||| | ||||| |||||| Sbjct 7737 TGAAAGCAGATGGT---GATATCAAAAAGGCAGAACGCGGCATTATCTATATTGATGAAA 7793 Query 188981 TAGATAAAATTGCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAG 189040 ||||||||||||| || ||| ||| | |||| || || ||||||| ||||| |||| Sbjct 7794 TAGATAAAATTGCAAGCAAAAGTGAAGGGCCATCAATAACAAGAGATGTTTCTGGTGAAG 7853 Query 189041 GAGTACAGCAAGCTTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAG 189100 | ||||| || || ||| | ||||| ||||| || |||| | || | |||| | || Sbjct 7854 GTGTACAACAGGCATTACTTAAAATTATTGAGGGAACAGAAGTTAA---TGCTCCACCAG 7910 Query 189101 GTGGTC--GTAAACA--CCCTCACCAAGAAATGCTTGAAATAGATACAACTAATATCTTG 189156 || | ||||| || || || ||| | | || |||| | ||||| ||| Sbjct 7911 TGGGGCAAAGAAACAATCCTTCTGCACAAAAAACAATTATTA-ATACCAAAAATATTTTG 7969 Query 189157 TTTATTCTTGGTGGAGCGTTTGATGGTCTTGAAAACATTA-TCAAGA---GACGCGCTAC 189212 ||||| |||||| | |||| || | ||||| || | |||| | || | | Sbjct 7970 TTTATCTGTGGTGGTTCATTTGCAGGAATAGAAAAAATAATTCAAAAAAGAACAAGTTCT 8029 Query 189213 AAAATCAACTTTAGGTTTTGATGATAGTGTAGA--TAAAGT--ACAAGAAGAAATCAAGG 189268 |||| ||| || | || || || ||| ||||| | ||| | ||| ||| | Sbjct 8030 AAAAATAACATTGGATT-------TATTGGAGACGGAAAGTTAAAAAGTA-AAAACAAAG 8081 Query 189269 ATGACAATAAAGTATTCCAACATCTTCAACCGCAAGATATTGTTAAGTATGGTTTAATTC 189328 | || | | | | | | | | || ||| ||||| || ||| | |||| | |||| Sbjct 8082 AGGATA--ACATTTTAACGAGA-GTTAAACATGAAGATCTTACTAAATTTGGTATTATTC 8138 Query 189329 CAGAATTTATTGGGCGTGTACCAGTAATCGCAACTCTTA-ACAAACTTGATCGAGATGCA 189387 | ||||| |||||||| ||||| |||| | | ||| | || | ||| || || Sbjct 8139 CTGAATTAATTGGGCGGTTACCAATAATTAC-TGTATTAGAAGAATTAGATGTTGAAACA 8197 Query 189388 TTGATTAACATTTTAACTGAGCCGCAAAACGCTATCATTAAACAATATCAGAAATTGTTA 189447 |||| ||| || ||||| ||||| ||||| | | |||||||| ||| | | || || Sbjct 8198 TTGACTAAAATATTAACCGAGCCTAAAAACTCATTAATTAAACAGTATAACTATTTATTT 8257 Query 189448 GATATGGATGGCGTGGAATTAGAATTCCAAAAAGAAGCATTAGAATCAATTGCAGATGAA 189507 || ||| || | | ||| | | || ||||| | ||||||||| | Sbjct 8258 AGTAAGGACAATGTAAATATTTCTTTCTCAGAGAAATCATTACATGAAATTGCAGAGAAG 8317 Query 189508 GCGATTGAACGTAATACTGGTGCTCGCGGATTACAATCCATTATTGAAAATATTATGTTA 189567 || || ||| ||||||||||| |||||| || ||| ||||| || | | | Sbjct 8318 GCAATACTTTCTAAAACTGGTGCTCGTGGATTAAAAGGTATTCTTGAAGATTTACTTGAA 8377 Query 189568 GATGTAATGTATGAA 189582 ||| | |||| |||| Sbjct 8378 GATCTTATGTTTGAA 8392 >seq6137 Length=9973 Score = 109 bits (120), Expect = 2e-18 Identities = 279/412 (68%), Gaps = 22/412 (5%) Strand=Plus/Minus Query 54150 AGATACCAACCAGCTACTCCAACTTTCCTAAATGCTG-GTAGAAGCAGACGCGGAGAAAT 54208 ||||| ||||| || || || || ||||| ||||| | |||| || ||| || ||| | Sbjct 4348 AGATATCAACCTGCAACACCGACATTCCTTAATGCCATGAAGAAACA-ACGTGGTGAACT 4290 Query 54209 GGTTTCTTGTTTCTTATT-AGAAATG--GATGATAGCTTGAATTCAATT--GGTTTCAAT 54263 ||||| || |||||| | |||| || || |||| || | || ||| | || || Sbjct 4289 TGTTTCCTGCTTCTTACTGAGAATTGAAGACGATA---TGGAATCTATTCAGAAATCTAT 4233 Query 54264 ATCAATACTGCAATGCAATTATCTAAAATTGGCGGCGGCGTTGCCTTAAACCTTTCTAAA 54323 || || || | || || || |||| || ||||| || || || ||| || |||| Sbjct 4232 TGGAA-AC-GCCCTTCAGTTGTCAAAAAGAGGTGGCGGGGTAGCATTTAACATTACTAAT 4175 Query 54324 CTTAGAGGAAGAAAAGAGCAAATTAAAGGTATTGATGATGCTGCTTCTGGAGTAGTACCA 54383 | |||| || | | | ||||||||||||||| |||||| | || || | | || Sbjct 4174 ATCAGAGAAAAAGGTGCTCCAATTAAAGGTATTGAAGATGCTTCATCAGGTCCAATTCCT 4115 Query 54384 GTTATGAAACTTTTAGAAGATAGCTTCTCTTATGCTAATCAGCTTGGCCAAAGAAAAGGC 54443 || |||||| | ||||| ||| || |||||||||||| | ||| ||| |||| Sbjct 4114 GTAATGAAATTGTTAGAGGATGCATTTAGTTATGCTAATCAATTAGGCGCAAGGCAAGGA 4055 Query 54444 GCTGGAGCTGTTTACTTA----AACATCTTCCACTGGGATATTATTGAATTCTTAGATAC 54499 || || ||||| || || ||| | |||| || | || | | | ||||| Sbjct 4054 GCAGGTGCTGTATATATAGATGTACACCATCCA----GACTTAATGGCTGTACTTGATAC 3999 Query 54500 TAAAA-AGATCAATGCTGATGAAAAAGCCAGAATTCAATCTTTATCTATTGG 54550 ||||| ||| ||||||||||||||| ||||| || | |||||| |||| Sbjct 3998 TAAAAGAGA-AAATGCTGATGAAAAAATAAGAATAAAAACATTATCTGTTGG 3948 >seq982 Length=16097 Score = 84.2 bits (92), Expect = 7e-11 Identities = 74/93 (80%), Gaps = 6/93 (6%) Strand=Plus/Plus Query 180782 TTTACCAGGGAAATTAGCTGATTGTACTTCTAAAACTT------ATTCTGAACTATATAT 180835 |||||||||||||||||| ||||||||||| | || || | | ||||| ||| | Sbjct 8389 TTTACCAGGGAAATTAGCCGATTGTACTTCAACAAATTTAGAAGAAACAGAACTTTATTT 8448 Query 180836 TGTAGAAGGTGATTCTGCTGGTGGTTCTGCTAA 180868 || || |||||||||||||||||||| ||||| Sbjct 8449 GGTTGAGGGTGATTCTGCTGGTGGTTCAGCTAA 8481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591277113666752