Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_023719.1
Length=497513
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 156 1e-32
seq6137 109 2e-18
seq982 84.2 7e-11
>seq2789
Length=15484
Score = 156 bits (172), Expect = 1e-32
Identities = 593/915 (65%), Gaps = 47/915 (5%)
Strand=Plus/Plus
Query 188684 CAGTTTATAATCATTATAAGCGCATTAATGCTCTTAATGaaaaatcaaaaaatgatgatg 188743
|||| || ||||||||||| || |||||| | | ||||| | ||||| ||
Sbjct 7509 CAGTATACAATCATTATAAACGAATTAATTCAATCGATGAAGAT------AATGACATTG 7562
Query 188744 gagtaaagatcaaaaaaTCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACAT 188803
| || || ||||| || || | | | || |||||||| | ||||| || |
Sbjct 7563 AA------ATTAACAAATCAAACGTATTAATTATCGGGCCTACTGGAACTGGTAAGACTT 7616
Query 188804 TATTTGCTCAAACATTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTT 188863
|| | || || | | ||| | | ||| || ||||| | | || | ||||| || |
Sbjct 7617 TACTAGCGGAATCTATTGCTAAAAAATTAGATTTACCTTTTGTAATTGCCGATGCGACAT 7676
Query 188864 CTTTAACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAACGT-ATTGCTTCGTT--TAA 188920
|| | || ||||||||||| |||||||||||||| ||| | | ||| || || | |
Sbjct 7677 CTATTACCGAAGCTGGTTACGTAGGTGAAGATGTTGAACAAATGATTTCTAAATTACTCA 7736
Query 188921 TCCAAGCAGCTGATTACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAG 188980
| |||||| || | |||||| || || ||||| || ||| | ||||| ||||||
Sbjct 7737 TGAAAGCAGATGGT---GATATCAAAAAGGCAGAACGCGGCATTATCTATATTGATGAAA 7793
Query 188981 TAGATAAAATTGCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAG 189040
||||||||||||| || ||| ||| | |||| || || ||||||| ||||| ||||
Sbjct 7794 TAGATAAAATTGCAAGCAAAAGTGAAGGGCCATCAATAACAAGAGATGTTTCTGGTGAAG 7853
Query 189041 GAGTACAGCAAGCTTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAG 189100
| ||||| || || ||| | ||||| ||||| || |||| | || | |||| | ||
Sbjct 7854 GTGTACAACAGGCATTACTTAAAATTATTGAGGGAACAGAAGTTAA---TGCTCCACCAG 7910
Query 189101 GTGGTC--GTAAACA--CCCTCACCAAGAAATGCTTGAAATAGATACAACTAATATCTTG 189156
|| | ||||| || || || ||| | | || |||| | ||||| |||
Sbjct 7911 TGGGGCAAAGAAACAATCCTTCTGCACAAAAAACAATTATTA-ATACCAAAAATATTTTG 7969
Query 189157 TTTATTCTTGGTGGAGCGTTTGATGGTCTTGAAAACATTA-TCAAGA---GACGCGCTAC 189212
||||| |||||| | |||| || | ||||| || | |||| | || | |
Sbjct 7970 TTTATCTGTGGTGGTTCATTTGCAGGAATAGAAAAAATAATTCAAAAAAGAACAAGTTCT 8029
Query 189213 AAAATCAACTTTAGGTTTTGATGATAGTGTAGA--TAAAGT--ACAAGAAGAAATCAAGG 189268
|||| ||| || | || || || ||| ||||| | ||| | ||| ||| |
Sbjct 8030 AAAAATAACATTGGATT-------TATTGGAGACGGAAAGTTAAAAAGTA-AAAACAAAG 8081
Query 189269 ATGACAATAAAGTATTCCAACATCTTCAACCGCAAGATATTGTTAAGTATGGTTTAATTC 189328
| || | | | | | | | | || ||| ||||| || ||| | |||| | ||||
Sbjct 8082 AGGATA--ACATTTTAACGAGA-GTTAAACATGAAGATCTTACTAAATTTGGTATTATTC 8138
Query 189329 CAGAATTTATTGGGCGTGTACCAGTAATCGCAACTCTTA-ACAAACTTGATCGAGATGCA 189387
| ||||| |||||||| ||||| |||| | | ||| | || | ||| || ||
Sbjct 8139 CTGAATTAATTGGGCGGTTACCAATAATTAC-TGTATTAGAAGAATTAGATGTTGAAACA 8197
Query 189388 TTGATTAACATTTTAACTGAGCCGCAAAACGCTATCATTAAACAATATCAGAAATTGTTA 189447
|||| ||| || ||||| ||||| ||||| | | |||||||| ||| | | || ||
Sbjct 8198 TTGACTAAAATATTAACCGAGCCTAAAAACTCATTAATTAAACAGTATAACTATTTATTT 8257
Query 189448 GATATGGATGGCGTGGAATTAGAATTCCAAAAAGAAGCATTAGAATCAATTGCAGATGAA 189507
|| ||| || | | ||| | | || ||||| | ||||||||| |
Sbjct 8258 AGTAAGGACAATGTAAATATTTCTTTCTCAGAGAAATCATTACATGAAATTGCAGAGAAG 8317
Query 189508 GCGATTGAACGTAATACTGGTGCTCGCGGATTACAATCCATTATTGAAAATATTATGTTA 189567
|| || ||| ||||||||||| |||||| || ||| ||||| || | | |
Sbjct 8318 GCAATACTTTCTAAAACTGGTGCTCGTGGATTAAAAGGTATTCTTGAAGATTTACTTGAA 8377
Query 189568 GATGTAATGTATGAA 189582
||| | |||| ||||
Sbjct 8378 GATCTTATGTTTGAA 8392
>seq6137
Length=9973
Score = 109 bits (120), Expect = 2e-18
Identities = 279/412 (68%), Gaps = 22/412 (5%)
Strand=Plus/Minus
Query 54150 AGATACCAACCAGCTACTCCAACTTTCCTAAATGCTG-GTAGAAGCAGACGCGGAGAAAT 54208
||||| ||||| || || || || ||||| ||||| | |||| || ||| || ||| |
Sbjct 4348 AGATATCAACCTGCAACACCGACATTCCTTAATGCCATGAAGAAACA-ACGTGGTGAACT 4290
Query 54209 GGTTTCTTGTTTCTTATT-AGAAATG--GATGATAGCTTGAATTCAATT--GGTTTCAAT 54263
||||| || |||||| | |||| || || |||| || | || ||| | || ||
Sbjct 4289 TGTTTCCTGCTTCTTACTGAGAATTGAAGACGATA---TGGAATCTATTCAGAAATCTAT 4233
Query 54264 ATCAATACTGCAATGCAATTATCTAAAATTGGCGGCGGCGTTGCCTTAAACCTTTCTAAA 54323
|| || || | || || || |||| || ||||| || || || ||| || ||||
Sbjct 4232 TGGAA-AC-GCCCTTCAGTTGTCAAAAAGAGGTGGCGGGGTAGCATTTAACATTACTAAT 4175
Query 54324 CTTAGAGGAAGAAAAGAGCAAATTAAAGGTATTGATGATGCTGCTTCTGGAGTAGTACCA 54383
| |||| || | | | ||||||||||||||| |||||| | || || | | ||
Sbjct 4174 ATCAGAGAAAAAGGTGCTCCAATTAAAGGTATTGAAGATGCTTCATCAGGTCCAATTCCT 4115
Query 54384 GTTATGAAACTTTTAGAAGATAGCTTCTCTTATGCTAATCAGCTTGGCCAAAGAAAAGGC 54443
|| |||||| | ||||| ||| || |||||||||||| | ||| ||| ||||
Sbjct 4114 GTAATGAAATTGTTAGAGGATGCATTTAGTTATGCTAATCAATTAGGCGCAAGGCAAGGA 4055
Query 54444 GCTGGAGCTGTTTACTTA----AACATCTTCCACTGGGATATTATTGAATTCTTAGATAC 54499
|| || ||||| || || ||| | |||| || | || | | | |||||
Sbjct 4054 GCAGGTGCTGTATATATAGATGTACACCATCCA----GACTTAATGGCTGTACTTGATAC 3999
Query 54500 TAAAA-AGATCAATGCTGATGAAAAAGCCAGAATTCAATCTTTATCTATTGG 54550
||||| ||| ||||||||||||||| ||||| || | |||||| ||||
Sbjct 3998 TAAAAGAGA-AAATGCTGATGAAAAAATAAGAATAAAAACATTATCTGTTGG 3948
>seq982
Length=16097
Score = 84.2 bits (92), Expect = 7e-11
Identities = 74/93 (80%), Gaps = 6/93 (6%)
Strand=Plus/Plus
Query 180782 TTTACCAGGGAAATTAGCTGATTGTACTTCTAAAACTT------ATTCTGAACTATATAT 180835
|||||||||||||||||| ||||||||||| | || || | | ||||| ||| |
Sbjct 8389 TTTACCAGGGAAATTAGCCGATTGTACTTCAACAAATTTAGAAGAAACAGAACTTTATTT 8448
Query 180836 TGTAGAAGGTGATTCTGCTGGTGGTTCTGCTAA 180868
|| || |||||||||||||||||||| |||||
Sbjct 8449 GGTTGAGGGTGATTCTGCTGGTGGTTCAGCTAA 8481
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1591277113666752
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |