Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_024122.1 Length=162910 Score E Sequences producing significant alignments: (Bits) Value seq1262 105 7e-18 seq2410 104 2e-17 >seq1262 Length=72559 Score = 105 bits (116), Expect = 7e-18 Identities = 75/85 (88%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 83199 TTATTTAGTGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTG 83258 ||||||| ||||| ||| ||||||||||||||||||||| | ||||||||||||| || Sbjct 63810 TTATTTATTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTG 63869 Query 83259 CTCTAACC-ACTGAGCTACGGGGCC 83282 |||||||| ||||||||| |||||| Sbjct 63870 CTCTAACCAACTGAGCTAAGGGGCC 63894 Score = 84.2 bits (92), Expect = 2e-11 Identities = 59/66 (89%), Gaps = 1/66 (2%) Strand=Plus/Plus Query 83218 GCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTAACC-ACTGAGCTAC 83276 ||||||||||||||||||||| | ||||||||||||| |||||||||| ||||||||| Sbjct 64414 GCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAACCAACTGAGCTAA 64473 Query 83277 GGGGCC 83282 || ||| Sbjct 64474 GGAGCC 64479 >seq2410 Length=3205 Score = 104 bits (114), Expect = 2e-17 Identities = 74/84 (88%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 83199 TTATTTAGTGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTG 83258 ||||||| ||||| ||| ||||||||||||||||||||| | ||||||||||||| || Sbjct 1034 TTATTTATTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTG 975 Query 83259 CTCTAACC-ACTGAGCTACGGGGC 83281 |||||||| ||||||||| ||||| Sbjct 974 CTCTAACCAACTGAGCTAAGGGGC 951 Score = 87.8 bits (96), Expect = 2e-12 Identities = 64/73 (88%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 83218 GCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTAACC-ACTGAGCTAC 83276 ||||||||||||||||||||| | ||||||||||||| |||||||||| ||||||||| Sbjct 1846 GCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAACCAACTGAGCTAA 1787 Query 83277 GGGGCCAAAATTT 83289 |||| | || ||| Sbjct 1786 GGGGGCTAACTTT 1774 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 83207 TGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTAACC 83266 ||||| | | ||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct 2378 TGGTGCCTCCTGCTGGACTTGAACCAGCGACCTGACGATTATGAGTCGTATGCTCTAACC 2319 Query 83267 -ACTGAGCTACGGGGCCA 83283 ||||||||| |||| || Sbjct 2318 AACTGAGCTAAGGGGGCA 2301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520981721974800