Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_024124.2 Length=169148 Score E Sequences producing significant alignments: (Bits) Value seq2789 145 8e-30 >seq2789 Length=15484 Score = 145 bits (160), Expect = 8e-30 Identities = 509/779 (65%), Gaps = 23/779 (3%) Strand=Plus/Minus Query 124281 AACGAGAATGCTAATAAAGATTCTCGTGTTTTTCCAACTCAACGGGACCTTATGGCTGGT 124340 || || ||||||||||||||| |||| ||||||||||| | || | | |||||| Sbjct 3883 AATGAAAATGCTAATAAAGATAGCAATGTTATTCCAACTCAAAGAGATTTGTTAGCTGGT 3824 Query 124341 ATTGTGTCTAAGCACATTGCCAAAAAT---ATGGTCCC----GTCTTTTATTATGAAAGC 124393 || | ||||| || ||| |||||| || | || | | | | | ||| || Sbjct 3823 ATAATTTCTAAACATTATGCTAAAAATCATATACTTCCCAAAGACGT--AGT-TGAC-GC 3768 Query 124394 ACATGAAAGCGGAATTATCCATTTCCATGATATTGATTATTCCCCTGCTCTTCCATTTAC 124453 ||||||| || || |||| |||||| | |||||||| || | ||||| | Sbjct 3767 TCATGAAAAAGGTGAAATTCATTATCATGATTTAGATTATTCACCATTTTTTCCAATGTT 3708 Query 124454 TAATTGCTGTTTAGTAGATTTAAAAGGAATGCTTGAAAACGGGTTTAAGCTAGGTAATGC 124513 |||||| ||||| ||||||||||||||||||||| || ||||| |||| ||||| Sbjct 3707 TAATTGTATGTTAGTTGATTTAAAAGGAATGCTTGAAGGTGGCTTTAAAATAGGAAATGC 3648 Query 124514 TCAAATTGAAACGCCTAAATCGATTGGTGTTGCTACTGCAATTATGGCACAAATTACCGC 124573 | |||||||||| || || ||||| || || || || | || ||||| | || Sbjct 3647 TGAAATTGAAACTCCACGTTCAATTGGAACAGCAACGGCTATAACTGCTCAAATAATAGC 3588 Query 124574 ACAGGTTGCTTCACATCAGTACGGCGGAACGACTTTTGCTAATGTAGATAAAGTACTTT- 124632 || || || ||| || || ||||| || || ||| | ||| | || ||| Sbjct 3587 GCAAGTCGCAAGTCATACTTATGGTGGAACAACGATTAACAATATCGAT--ATTATTTTA 3530 Query 124633 -CTCCTTATGTTAAACGCACCT-ATGCAAAACATATTGAGGATGCAGAAAAATGGCAAAT 124690 | ||||||| |||| || || | ||| ||| | || ||||||||| | || Sbjct 3529 GCCCCTTATG-TAAAAGCTTCTGAAATAAAGTTAATTAAAGAAACAGAAAAATATAATAT 3471 Query 124691 CGCTGATGCGTTGAATTATGCCCAATCTAAAACAGAAAAAGACGTATACGATGCATTTCA 124750 | | || | || |||| | |||| |||||||| | ||||| ||||| Sbjct 3470 CCCCAATCCAGATAAATATGTTAATGAAAAAATTGAAAAAGAATGTTTTGATGCTTTTCA 3411 Query 124751 AGCTTATGAGTATGAAGTAAATACTCTTTTTAGCTCAAACGGTCAAACGCCTTTTGTAAC 124810 || | || |||||| | |||||| | || | |||| || ||||| || ||||| || Sbjct 3410 AGGATTAGAATATGAAATTAATACTTTGCATACCGCAAATGGACAAACCCCATTTGTTAC 3351 Query 124811 AATTACATTTGGTACTGGAACTGACTGGA-CTGAACGAATTATTCAGAAAGCAATTCTTA 124869 || ||||| ||| | | | || | ||| || | ||||| ||| |||| | | Sbjct 3350 TTTTGGTTTTGG-ACTTGGAATTACAAAAGAGGAAAGATTAATTCAAAAATCAATATTAA 3292 Query 124870 AAAACCGCATTAAAGGCCTTGGTCGTGATGGAATAACTCCTATTTTCCCTAAACTTGTTA 124929 |||| | || || || | || || || ||| | | || || ||||||||| Sbjct 3291 GAAACAGAATAAATGGGTTAGGAAAAAATAAAAAAACGGCAGTATTTCCAAAACTTGTTT 3232 Query 124930 TGTTCATTGAAGAGGGTGTCAATCTTTATAAAGA-CGACCCGAACTATGATATTAAGCAG 124988 | ||| |||| || | ||| || || | ||| || || |||||||| || || Sbjct 3231 TTGCCATAAAAGAAGG-GACAAATAGAATTAATAGCGATCCTAATTATGATATAAAACAA 3173 Query 124989 CTTGCTCTAGAGTGTGCAAGCAAAAGAATGTATCCTGATATTATTTCAGTTAAGAACAA 125047 || || || || ||| ||| || |||||||||||||||| ||| | ||| || ||| Sbjct 3172 CTGGCGCTTGAATGTTCAACACAACGAATGTATCCTGATAT--TTTAAATTATGAGCAA 3116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540935574628320