Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_024125.2 Length=168470 Score E Sequences producing significant alignments: (Bits) Value seq2789 127 2e-24 >seq2789 Length=15484 Score = 127 bits (140), Expect = 2e-24 Identities = 493/763 (65%), Gaps = 19/763 (2%) Strand=Plus/Plus Query 44473 AATATCAGGATACATCCTTTTGCTTGCGCACTCTAGAGCAAGCTGTTTAATATCATAGTT 44532 ||||||||||||||| | || ||| || || || || || ||||| |||||||| || Sbjct 3131 AATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATT 3190 Query 44533 CGGGTCGTCTTTATAAAGATTAACACCTTCTTCAACGAACATAACAAGCTTAGGGAAAAT 44592 || ||| ||| ||| ||||||| | | | |||||| || || || | Sbjct 3191 AGGATCGCTATTAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAATAC 3250 Query 44593 AGGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAAT 44652 | ||| | || || | || || || | ||| | | |||| ||| ||||| Sbjct 3251 TGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGAAT 3310 Query 44653 CATTCGTTCAG-TCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTTGTC 44711 | || ||| | || | | | || ||||| || || ||||| || ||||||| Sbjct 3311 TAATCTTTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTTGTC 3369 Query 44712 CGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACGT 44771 | |||| || | |||||| | ||||||||| | |||| || ||||| | | Sbjct 3370 CATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAAACATT 3429 Query 44772 CTTTTTCTGTTTTAGACTGGGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTGCAT 44831 ||||||| |||| | |||| || | || | ||| | ||||||||| | Sbjct 3430 CTTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTGTTT 3489 Query 44832 CCTCAATATGTTTTGCAT-AGGTGCGTTTAACATAAGGAG--AAAGTACTTTATCTACAT 44888 | | ||| ||| | || || |||| ||||||| | ||| || | ||| | || Sbjct 3490 CTTTAATTAACTTTATTTCAGAAGCTTTTA-CATAAGGGGCTAAAATAAT--ATCGATAT 3546 Query 44889 TCGCAAAAGTCGTTCCGCCGTATTGGTGAGAAGCAACCTGTGCAGTAATTTGTGCCATAA 44948 | || || ||||| || || ||| || || || || | ||||| || | | Sbjct 3547 TGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAGTTA 3606 Query 44949 TTGCAGTAGCAACGCCAATTGATTTAGGAGTTTCAATCTGTGCATTACCTAGCTTAAATC 45008 | || || || |||||||| ||||||||||| | ||||| |||| ||||| | Sbjct 3607 TAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAAAGC 3666 Query 45009 CGTTTTCAAGCATTCCTTTTAAATCTACTAAACAACAATTAGTAAATGGAAGAGCAGGGG 45068 | ||||||||||||||||||||| ||||| ||||||| | ||||| | || | Sbjct 3667 CACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAATGGTG 3726 Query 45069 AATAATCAATATCGTGGAAATGGATAATTCCGCTTTCATGCGCTTTCATAATAAAAGAC- 45127 ||||||| | ||| || |||| || || ||||||| || ||| | | | | | Sbjct 3727 AATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--ACGTCT 3782 Query 45128 ---GGGACCAT---ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTCCCGT 45181 || | || |||||| ||| |||||||| | |||||||| | | || | | Sbjct 3783 TTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATCTCTT 3842 Query 45182 TGAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTA 45224 |||||||||| |||| ||||||||||||||| || |||| Sbjct 3843 TGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538766816677200