Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_024354.1 Length=149162 Score E Sequences producing significant alignments: (Bits) Value seq1262 91.5 1e-13 >seq1262 Length=72559 Score = 91.5 bits (100), Expect = 1e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 146979 TGGTATAGTGGTTGTGCCTTAGCCTTCCAAGCTAATGAGTCCGGTTCGATCCCGGATGCC 147038 ||||||||||| ||||||||||||||||||||||||||| || ||||||||| || || Sbjct 60225 TGGTATAGTGGCTGTGCCTTAGCCTTCCAAGCTAATGAGACCAGTTCGATCCTGGTAACC 60166 Query 147039 CGCTCCAA 147046 |||||||| Sbjct 60165 CGCTCCAA 60158 Score = 86.0 bits (94), Expect = 6e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 146979 TGGTATAGTGGTTGTGCCTTAGCCTTCCAAGCTAATGAGTCCGGTTCGATCCCGGATGCC 147038 ||||||||||| ||||||||||||||||||||||||||| || ||||||||| || | Sbjct 60671 TGGTATAGTGGCTGTGCCTTAGCCTTCCAAGCTAATGAGACCAGTTCGATCCTGGTAACT 60612 Query 147039 CGCTCCA 147045 ||||||| Sbjct 60611 CGCTCCA 60605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477005196440880