Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq9465 185 2e-41 >seq9465 Length=7312 Score = 185 bits (204), Expect = 2e-41 Identities = 310/446 (70%), Gaps = 2/446 (0%) Strand=Plus/Plus Query 198181 GAGAACTGTCGGATAATTTTTGTTACTATAATAAACATTACGATAGCGTACAGTCTACTC 198240 |||| |||| ||||||||||||| || ||| ||||||| |||||| | || | | Sbjct 6194 GAGAGTTGTCTGATAATTTTTGTTTTTACAATGAACATTATGATAGCATCAAGGGTGCAG 6253 Query 198241 ACGCATGGGCTAGAAGAACATTAGAAGATCACATTAATGATCCTAGAAAGTATATCTATT 198300 || ||||| || ||| |||| ||||| | || ||| | | | | | || Sbjct 6254 CTGCTTGGGCACAAACAACGCTAGATGATCATAAGAAGGATAAACGCACTTCTGTGTACA 6313 Query 198301 CTATTAAACAACTCGAAAAGGCGGAAACACATGACCCTCTATGGAATGCATCGCAAATAC 198360 | | | || | || | ||| ||||| || | ||||||||||| | ||||||| Sbjct 6314 GTTTGCAGGAATTTGAGGAAGCGCGCACACACGAGGATTTATGGAATGCAGCACAAATAC 6373 Query 198361 AGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATAC 198420 || ||| ||| || || ||||||||| ||||| | | ||||| ||||||||||| |||| Sbjct 6374 AGTTGAAAAGGGAGGGTAAAATGCATGGTTTTATGCGCATGTATTGGGCTAAAAAAATAC 6433 Query 198421 TTGAATGGACAAGAACACCGGAAGACGCTTTGAGTTATAGT-ATCTATCTAAACAATAAG 198479 | |||||| | || || || | |||||| | || | |||||| | || | ||| Sbjct 6434 TAGAATGGTCGGAAAGTCCAGAGAAAGCTTTG-GAAATTGCCATCTATTTGAATGACAAG 6492 Query 198480 TACGAACTAGACGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGA 198539 || | || ||||||| |||||||| || | || |||||||||||||| ||||| || Sbjct 6493 TATGCGCTGGACGGCAGTGATCCTAATGGTTTTGTTGGTTGTATGTGGTCGATTTGTGGC 6552 Query 198540 TTACATGATCGAGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAATTAT 198599 ||||||||| || ||| |||||| | | ||||| || ||| | || ||||| ||| Sbjct 6553 ATACATGATCAAGGATGGGGTGAAAGAGCAGTTTTTGGTAAAATACGTTACATGAACTAT 6612 Query 198600 GAGGGTTCTAAGAAAAAATTTGATGT 198625 | || | ||| ||||||||||| Sbjct 6613 GCTGGCTGTAAACGCAAATTTGATGT 6638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981436614105611