Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq9465 168 1e-36 >seq9465 Length=7312 Score = 168 bits (186), Expect = 1e-36 Identities = 219/300 (73%), Gaps = 2/300 (1%) Strand=Plus/Plus Query 183010 ACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCAT 183069 ||||| || | ||||||||||| ||||||||||| ||| || || || ||||||||| Sbjct 6340 ACACACGAGGATTTATGGAATGCAGCACAAATACAGTTGAAAAGGGAGGGTAAAATGCAT 6399 Query 183070 AGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGAT 183129 ||||| | || ||||| ||||||||||| ||||| |||||| | || ||| || | Sbjct 6400 GGTTTTATGCGCATGTATTGGGCTAAAAAAATACTAGAATGGTCGGAAAGTCCAGAGAAA 6459 Query 183130 GCTTTGAGTTATAG-TATCTATATGAACAATAAGTACGAACTAGACGGTACGGATCCTAA 183188 |||||| | || | |||||| |||| | ||||| | || ||||| | |||||||| Sbjct 6460 GCTTTG-GAAATTGCCATCTATTTGAATGACAAGTATGCGCTGGACGGCAGTGATCCTAA 6518 Query 183189 CGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAG 183248 || | || |||||||||||||| ||||| || |||| ||| || ||| ||||| Sbjct 6519 TGGTTTTGTTGGTTGTATGTGGTCGATTTGTGGCATACATGATCAAGGATGGGGTGAAAG 6578 Query 183249 ACCTATATTTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGT 183308 | | | ||||| || ||| | || ||||| |||| | | ||| ||||||||||| Sbjct 6579 AGCAGTTTTTGGTAAAATACGTTACATGAACTATGCTGGCTGTAAACGCAAATTTGATGT 6638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903060574820640