Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq4853 170 2e-37
seq2021 127 2e-24
>seq4853
Length=2014
Score = 170 bits (188), Expect = 2e-37
Identities = 617/949 (65%), Gaps = 31/949 (3%)
Strand=Plus/Plus
Query 148821 GCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCG 148880
|| || ||||||| ||| || || || | |||||||| || || ||||| || ||
Sbjct 495 GCAATTGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTACAATTTCA 554
Query 148881 GCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCAC 148940
| ||| | ||||||||| ||||| ||| | |||| |||||| ||||||| || ||
Sbjct 555 GTGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAA 614
Query 148941 GCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG--AACC 148998
|| ||||| || ||||| || || |||||||||||| || | || | ||| || |
Sbjct 615 GCATCCTTATAGAGCATATATGGAGTGCCAGTTTCCACTTGAGCCTCTATAATGGCAAAC 674
Query 148999 GATGCAGGTCCTGCGCGCGCAC-TTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTA 149057
| || | || || || ||| | | | ||||| || |||| ||| |
Sbjct 675 CA--CAAGGTTTGAGCTTTAACAGTGC-GATTGGCACGACCTTCACGCTCATATTTCTCA 731
Query 149058 TACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCAC 149117
|| || ||||||| | || || | || | || |||||||||||||| ||||||
Sbjct 732 TAAAGTTGCTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCACTTGTGTGGGCAC 791
Query 149118 ATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGC 149177
||||| ||||| |||| || || | ||| || ||||| |||| ||||| | ||| ||
Sbjct 792 ATGAGTGACCAATCGCCATCTGCCTCCACACGTTTCATGAACAAGTCGGGTATCCACAGA 851
Query 149178 GCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGC 149237
|| || | | || || || | ||||| ||| | || || | |
Sbjct 852 GCATAGAATAAATCTCGTGCACGATACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAA 911
Query 149238 ACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG 149297
| ||||| |||| |||||| || || | || | |||| || || || |||
Sbjct 912 AACTCAAATATATCCGAGTGCCAGGGTTCCAAATAGATGGCGAAGGCACCTGGACGTTTG 971
Query 149298 CCG---CCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATG 149354
||| ||||| || |||| |||| ||| ||| || ||||| || | |||||| | |
Sbjct 972 CCGCCTCCCTGATCCACGTAGCGCGCCACGTTATTGAACACACGCAGCATAGGCACTAAA 1031
Query 149355 CCACTGGCAGTGCCGTTAGT-AGAGCTAATGCGACTGCC----GCGCGCTCGCACTTTGT 149409
||| | | ||||| || || ||| ||||| |||| ||||| ||| |
Sbjct 1032 CCATTAGAGGTGCCATTCGTGCCAGC-AATGCCCGTGCCTTTGGCGCGTATGCA----AT 1086
Query 149410 GCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCG 149469
|||| || | ||| |||||||| || |||| ||||| ||||| | | | | |
Sbjct 1087 GCACATTCAGGCCAATGCCGCCTGCGGACTTGGAGATCATGGCGCATTGCTCTACGGACT 1146
Query 149470 AGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCG 149529
| | || ||||||||| ||| ||| || ||||| || || ||| ||| ||| |
Sbjct 1147 TGAAAATACCCTCGATGGAGTCAGCAACCATAGTGAGCAGGAAACAGGAGGACAGTTGTG 1206
Query 149530 GAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCA 149589
| | ||| | || ||||| | ||||| |||||| |||||||| || || |
Sbjct 1207 GGCGTCTTGTGGCTGCAGCGAATAGCGTGGGAGAGGCGTGAGTAAAATAGCGCT--CTGA 1264
Query 149590 T--CATCTCGTACGACTCGA-GCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGA 149646
| | | ||| | || | | ||| || || || ||||| || ||||| | || |
Sbjct 1265 TAGTAAATTGTAGGTTTCTATGGCCGC-ATCGATATCCTCGCCGTGTATGCCCACAGCCA 1323
Query 149647 CGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCA---ATTTTGAGCAAGT 149703
| |||||||| | ||| || || |||| || || || | ||| ||||| | || |
Sbjct 1324 CACGCATCAGTAGATGTTGAGGACGCT-CGACAATT--TCCCCATTGATTTTCAATAAAT 1380
Query 149704 AGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCG 149752
|| ||| ||||||||| | || ||||| || ||| ||||||||||
Sbjct 1381 AGGAACGTTCGAGTGTCTTGAATCCGAAGTAATTATAGCCAAAGTCGCG 1429
>seq2021
Length=2943
Score = 127 bits (140), Expect = 2e-24
Identities = 351/533 (66%), Gaps = 9/533 (2%)
Strand=Plus/Minus
Query 148821 GCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCG 148880
|| || ||||||| ||| || || || | |||||||| || || ||||| || ||
Sbjct 1217 GCAATTGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTACAATTTCA 1158
Query 148881 GCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCAC 148940
| ||| | ||||||||| ||||| ||| | |||| |||||| ||||||| || ||
Sbjct 1157 GTGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAA 1098
Query 148941 GCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG--AACC 148998
|| ||||| || ||||| || || ||||||||||||||| | || | ||| || |
Sbjct 1097 GCATCCTTATAGAGCATATATGGAGTGCCAGTTTCCACCTGAGCCTCTATAATGGCAAAC 1038
Query 148999 GATGCAGGTCCTGCGCGCGCAC-TTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTA 149057
| || | || || || ||| | | | ||||| || |||| ||| |
Sbjct 1037 CA--CAAGGTTTGAGCTTTAACAGTGC-GATTGGCACGACCTTCACGCTCATATTTCTCA 981
Query 149058 TACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCAC 149117
|| || ||||||| | || || | || | || |||||||||||||| ||||||
Sbjct 980 TAAAGTTGCTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCACTTGTGTGGGCAC 921
Query 149118 ATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGC 149177
||||| ||||| |||| || || | ||| || ||||| || | ||||| | ||| ||
Sbjct 920 ATGAGTGACCAATCGCCATCTGCCTCCACACGTTTCATGAATAAGTCGGGTATCCATAGA 861
Query 149178 GCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGC 149237
|| || | | || || || | ||||| ||| | || || | |
Sbjct 860 GCATAAAATAAATCTCGTGCACGATACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAA 801
Query 149238 ACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG 149297
| ||||| |||| |||||| || || | || | |||| ||||| || |||
Sbjct 800 AACTCAAATATATCCGAGTGCCAGGGTTCTAAATAGATGGCGAAGGCGCCTGGACGTTTG 741
Query 149298 CCG---CCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGG 149347
||| ||||| || |||| |||| ||| ||| || ||||| || | ||||||
Sbjct 740 CCGCCTCCCTGATCCACGTAGCGCGCCACGTTATTGAACACACGCAGCATAGG 688
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483233178344760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |