Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq4853 170 2e-37 seq2021 127 2e-24 >seq4853 Length=2014 Score = 170 bits (188), Expect = 2e-37 Identities = 617/949 (65%), Gaps = 31/949 (3%) Strand=Plus/Plus Query 148821 GCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCG 148880 || || ||||||| ||| || || || | |||||||| || || ||||| || || Sbjct 495 GCAATTGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTACAATTTCA 554 Query 148881 GCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCAC 148940 | ||| | ||||||||| ||||| ||| | |||| |||||| ||||||| || || Sbjct 555 GTGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAA 614 Query 148941 GCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG--AACC 148998 || ||||| || ||||| || || |||||||||||| || | || | ||| || | Sbjct 615 GCATCCTTATAGAGCATATATGGAGTGCCAGTTTCCACTTGAGCCTCTATAATGGCAAAC 674 Query 148999 GATGCAGGTCCTGCGCGCGCAC-TTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTA 149057 | || | || || || ||| | | | ||||| || |||| ||| | Sbjct 675 CA--CAAGGTTTGAGCTTTAACAGTGC-GATTGGCACGACCTTCACGCTCATATTTCTCA 731 Query 149058 TACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCAC 149117 || || ||||||| | || || | || | || |||||||||||||| |||||| Sbjct 732 TAAAGTTGCTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCACTTGTGTGGGCAC 791 Query 149118 ATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGC 149177 ||||| ||||| |||| || || | ||| || ||||| |||| ||||| | ||| || Sbjct 792 ATGAGTGACCAATCGCCATCTGCCTCCACACGTTTCATGAACAAGTCGGGTATCCACAGA 851 Query 149178 GCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGC 149237 || || | | || || || | ||||| ||| | || || | | Sbjct 852 GCATAGAATAAATCTCGTGCACGATACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAA 911 Query 149238 ACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG 149297 | ||||| |||| |||||| || || | || | |||| || || || ||| Sbjct 912 AACTCAAATATATCCGAGTGCCAGGGTTCCAAATAGATGGCGAAGGCACCTGGACGTTTG 971 Query 149298 CCG---CCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATG 149354 ||| ||||| || |||| |||| ||| ||| || ||||| || | |||||| | | Sbjct 972 CCGCCTCCCTGATCCACGTAGCGCGCCACGTTATTGAACACACGCAGCATAGGCACTAAA 1031 Query 149355 CCACTGGCAGTGCCGTTAGT-AGAGCTAATGCGACTGCC----GCGCGCTCGCACTTTGT 149409 ||| | | ||||| || || ||| ||||| |||| ||||| ||| | Sbjct 1032 CCATTAGAGGTGCCATTCGTGCCAGC-AATGCCCGTGCCTTTGGCGCGTATGCA----AT 1086 Query 149410 GCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCG 149469 |||| || | ||| |||||||| || |||| ||||| ||||| | | | | | Sbjct 1087 GCACATTCAGGCCAATGCCGCCTGCGGACTTGGAGATCATGGCGCATTGCTCTACGGACT 1146 Query 149470 AGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCG 149529 | | || ||||||||| ||| ||| || ||||| || || ||| ||| ||| | Sbjct 1147 TGAAAATACCCTCGATGGAGTCAGCAACCATAGTGAGCAGGAAACAGGAGGACAGTTGTG 1206 Query 149530 GAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCA 149589 | | ||| | || ||||| | ||||| |||||| |||||||| || || | Sbjct 1207 GGCGTCTTGTGGCTGCAGCGAATAGCGTGGGAGAGGCGTGAGTAAAATAGCGCT--CTGA 1264 Query 149590 T--CATCTCGTACGACTCGA-GCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGA 149646 | | | ||| | || | | ||| || || || ||||| || ||||| | || | Sbjct 1265 TAGTAAATTGTAGGTTTCTATGGCCGC-ATCGATATCCTCGCCGTGTATGCCCACAGCCA 1323 Query 149647 CGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCA---ATTTTGAGCAAGT 149703 | |||||||| | ||| || || |||| || || || | ||| ||||| | || | Sbjct 1324 CACGCATCAGTAGATGTTGAGGACGCT-CGACAATT--TCCCCATTGATTTTCAATAAAT 1380 Query 149704 AGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCG 149752 || ||| ||||||||| | || ||||| || ||| |||||||||| Sbjct 1381 AGGAACGTTCGAGTGTCTTGAATCCGAAGTAATTATAGCCAAAGTCGCG 1429 >seq2021 Length=2943 Score = 127 bits (140), Expect = 2e-24 Identities = 351/533 (66%), Gaps = 9/533 (2%) Strand=Plus/Minus Query 148821 GCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCG 148880 || || ||||||| ||| || || || | |||||||| || || ||||| || || Sbjct 1217 GCAATTGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTACAATTTCA 1158 Query 148881 GCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCAC 148940 | ||| | ||||||||| ||||| ||| | |||| |||||| ||||||| || || Sbjct 1157 GTGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAA 1098 Query 148941 GCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG--AACC 148998 || ||||| || ||||| || || ||||||||||||||| | || | ||| || | Sbjct 1097 GCATCCTTATAGAGCATATATGGAGTGCCAGTTTCCACCTGAGCCTCTATAATGGCAAAC 1038 Query 148999 GATGCAGGTCCTGCGCGCGCAC-TTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTA 149057 | || | || || || ||| | | | ||||| || |||| ||| | Sbjct 1037 CA--CAAGGTTTGAGCTTTAACAGTGC-GATTGGCACGACCTTCACGCTCATATTTCTCA 981 Query 149058 TACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCAC 149117 || || ||||||| | || || | || | || |||||||||||||| |||||| Sbjct 980 TAAAGTTGCTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCACTTGTGTGGGCAC 921 Query 149118 ATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGC 149177 ||||| ||||| |||| || || | ||| || ||||| || | ||||| | ||| || Sbjct 920 ATGAGTGACCAATCGCCATCTGCCTCCACACGTTTCATGAATAAGTCGGGTATCCATAGA 861 Query 149178 GCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGC 149237 || || | | || || || | ||||| ||| | || || | | Sbjct 860 GCATAAAATAAATCTCGTGCACGATACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAA 801 Query 149238 ACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG 149297 | ||||| |||| |||||| || || | || | |||| ||||| || ||| Sbjct 800 AACTCAAATATATCCGAGTGCCAGGGTTCTAAATAGATGGCGAAGGCGCCTGGACGTTTG 741 Query 149298 CCG---CCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGG 149347 ||| ||||| || |||| |||| ||| ||| || ||||| || | |||||| Sbjct 740 CCGCCTCCCTGATCCACGTAGCGCGCCACGTTATTGAACACACGCAGCATAGG 688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483233178344760