Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2021 138 3e-27 seq4853 136 9e-27 seq2580 87.8 4e-12 >seq2021 Length=2943 Score = 138 bits (152), Expect = 3e-27 Identities = 280/412 (68%), Gaps = 14/412 (3%) Strand=Plus/Plus Query 110751 GGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTT 110810 ||| | || || |||||| | ||||| ||||| || ||||||||||| || || || | Sbjct 751 GGCGCCTTCGCCATCTATTTAGAACCCTGGCACTCGGATATATTTGAGTTTTTGGATTTG 810 Query 110811 CGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATT 110870 |||||| || ||||| | | ||||| |||||||||||||| | ||||| Sbjct 811 AAGAAAAATACTGGCAAGGAAGAGTATCGTGCACGAGATTTATTTTATGCTCTATGGATA 870 Query 110871 TCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCAT 110930 | || ||||||||||||||||| | | | ||||| ||||| || ||||| || || Sbjct 871 CCCGACTTATTCATGAAACGTGTGGAGGCAGATGGCGATTGGTCACTCATGTGCCCACAC 930 Query 110931 CGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATAT 110990 | || || ||| ||| || | || |||| || || | ||||| || |||||| Sbjct 931 AAGTGCCCCGGACTACATGAAGTTTGGGGTGAAGAATTCGAGCAACTTTATGAGAAATAT 990 Query 110991 GAAAAAGAAGG------CAAGTTTCGCAAACAAATTCCAGCTCAAGAACTT-TGGTTCAA 111043 || ||||| ||| ||||| || ||||||| | ||| ||||| Sbjct 991 GAGCGTGAAGGTCGTGCCAA---TCGCA---CTGTTAAAGCTCAA-ACCTTGTGGTTTGC 1043 Query 111044 AATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAA 111103 || | || | || || |||||||| ||||| ||||| | ||||| ||| | ||| Sbjct 1044 CATTATAGAGGCTCAGGTGGAAACTGGCACTCCATATATGCTCTATAAGGATGCTTGTAA 1103 Query 111104 TCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 |||||| ||||||| |||| |||| || || |||| || ||||| ||| Sbjct 1104 TCGCAAGAGTAATCAACAGAATCTAGGCACTATCAAGTGCAGCAATTTATGC 1155 >seq4853 Length=2014 Score = 136 bits (150), Expect = 9e-27 Identities = 276/406 (68%), Gaps = 14/406 (3%) Strand=Plus/Minus Query 110757 TTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAA 110816 || || |||||| | ||||| ||||| || ||||||||||| || || || | ||| Sbjct 955 TTCGCCATCTATTTGGAACCCTGGCACTCGGATATATTTGAGTTTTTGGATTTGAAGAAA 896 Query 110817 AATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGAT 110876 ||| || ||||| | | ||||| |||||||| ||||| ||||||| | || Sbjct 895 AATACTGGCAAGGAAGAGTATCGTGCACGAGATTTATTCTATGCTCTGTGGATACCCGAC 836 Query 110877 TTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCT 110936 || |||||||||||||| | | | ||||| ||||| || ||||| || || | Sbjct 835 TTGTTCATGAAACGTGTGGAGGCAGATGGCGATTGGTCACTCATGTGCCCACACAAGTGC 776 Query 110937 CCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAA 110996 || || ||| ||| || | || |||| || || | ||||| || |||||||| Sbjct 775 CCCGGACTACATGAAGTTTGGGGTGAAGAATTCGAGCAACTTTATGAGAAATATGAGCGT 716 Query 110997 GAAGG------CAAGTTTCGCAAACAAATTCCAGCTCAAGAACTT-TGGTTCAAAATCCT 111049 ||||| ||| ||||| || ||||||| | ||| ||||| || | Sbjct 715 GAAGGTCGTGCCAA---TCGCA---CTGTTAAAGCTCAA-ACCTTGTGGTTTGCCATTAT 663 Query 111050 TGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAA 111109 || | ||||| |||||||| ||||| ||||| | ||||| ||| | ||||||||| Sbjct 662 AGAGGCTCAAGTGGAAACTGGCACTCCATATATGCTCTATAAGGATGCTTGTAATCGCAA 603 Query 111110 ATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 ||||||| |||| |||| || || |||| || ||||| ||| Sbjct 602 GAGTAATCAACAGAATCTAGGCACTATCAAGTGCAGCAATTTATGC 557 >seq2580 Length=6078 Score = 87.8 bits (96), Expect = 4e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 || || || ||| | ||||| ||| ||||||||||||| || ||| |||| | | ||| Sbjct 2148 GTGCTCTTTAATCGTCAACCTTCATTGCATAAAATGTCAATTATGTGTCATCAGGCCAAG 2089 Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGAT 305449 || || || || || || |||| | |||| || || || |||||||| ||| Sbjct 2088 GTGCAGCCTCAGCGCACCTTCCGCTTTAATGAATGTGCCTGCACTCCGTATAATGCAGAT 2029 Query 305450 TTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 |||||||| |||||||||||| | ||| | || ||| Sbjct 2028 TTTGATGGCGATGAAATGAATTTACATTTGCCACAA 1993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186340667695089