Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_025431.1 Length=45718 Score E Sequences producing significant alignments: (Bits) Value seq31035 107 6e-19 >seq31035 Length=3922 Score = 107 bits (118), Expect = 6e-19 Identities = 293/447 (66%), Gaps = 4/447 (1%) Strand=Plus/Minus Query 8057 AAGAGCCATCTCATCTTTATCTATGGGTACCGAACGCCCTCCTGGCGGAAGGACTGTCCG 8116 |||| || | ||| |||||| ||||| || || || || || | || || | | Sbjct 2327 AAGACACAGCGCATTGTTATCTTTGGGTGCCTAATGCTCTTTTGCCTGATGGTTTAGAGG 2268 Query 8117 TGATGGCGGCGTGGGGCTTCACATACAAATCGAACATCGTGTGGCACAAAATCCGCAAAG 8176 | || ||||||||| ||| || ||||||||||| | ||||| ||| | | |||| Sbjct 2267 TTTTGAAGGCGTGGGGGTTCGAGTATAAATCGAACATAATATGGCATAAAGTTAGAAAAG 2208 Query 8177 ACGGCGGGTCAGACGGTCGCGGCGTCGGCTTTTATTTCCGGAATGTGACCGAGATTATCC 8236 | ||||| || || || | || || || ||||||||| ||||||| || || || | Sbjct 2207 ATGGCGGCTCTGATGGAAGAGGAGTTGGTTTTTATTTCAGGAATGTAACAGAAATACTAT 2148 Query 8237 TGTTTGGGACAAAGGGAAAAAACGCCAGAACACTCGCACCCGGTCGCACCCAAGTGAACT 8296 | || || |||| ||||| || || |||| | | | ||| | || ||||| || Sbjct 2147 TATTCGGAACAAGAGGAAAGAATGCGCGAACCTTAGATCGCGGAAGAACTCAAGTAAATC 2088 Query 8297 ACATCTCT--TCGCAGAAGCGGGAGCACTCACGCAAACCAGATGAACTTTATCCAATCAT 8354 ||||| ||||| || | || || || | || || || || | ||| || || Sbjct 2087 TTTTCTCTACTCGCAAAA--GAGAACATTCGAGGAAGCCTGACGAGCAGTATGAGATAAT 2030 Query 8355 CGAAGCGTGTTCGTCAGGCCCGTATCTGGAACTTTTTGGTCGCGGTATTAGAAAGGGGTG 8414 |||| || || || || ||| ||||||||||||| | || |||| | || Sbjct 2029 AGAAGGCTGCTCTCGTGGGCCATATTTGGAACTTTTTGGAAGAGGCCGTAGAGAAAATTG 1970 Query 8415 GGCGACTTGGGGCAATCAAGCGGACGAAAGTTATCGTCCGAACTGGCCCACCTACAAGAA 8474 | | |||||| |||||||| ||||| |||| |||| ||| || || || | Sbjct 1969 GACAGTTTGGGGTAATCAAGCAGACGACGATTATAAGCCGACTTGGAAAACGTATAAATA 1910 Query 8475 TAATAGCGCGGCTATCGCAGCGGAGTA 8501 |||| | || ||| | |||||||| Sbjct 1909 TAATTCGACAGCAATCCCCGCGGAGTA 1883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146122103903840