Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_025446.1 Length=157308 Score E Sequences producing significant alignments: (Bits) Value seq1262 96.9 3e-15 seq4032 95.1 1e-14 seq2410 95.1 1e-14 >seq1262 Length=72559 Score = 96.9 bits (106), Expect = 3e-15 Identities = 69/78 (88%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 76787 TTGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTAAC 76846 |||||| ||| ||||||||||||||||||||| | ||||||||||||| ||||||||| Sbjct 63817 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAAC 63876 Query 76847 C-ACTGAGCTACGGGGCC 76863 | ||||||||| |||||| Sbjct 63877 CAACTGAGCTAAGGGGCC 63894 Score = 87.8 bits (96), Expect = 2e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 76404 GCAGGACTTGAACCTGCGACATATGGATTAACAGTCCACCGTTCTACCGACTGAACTA 76461 || ||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 60754 GCTGGACTCGAACCAGCGACATATGGATTAACAGTCCACCGTTCTACCAACTGAACTA 60811 Score = 84.2 bits (92), Expect = 2e-11 Identities = 59/66 (89%), Gaps = 1/66 (2%) Strand=Plus/Plus Query 76799 GCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTAACC-ACTGAGCTAC 76857 ||||||||||||||||||||| | ||||||||||||| |||||||||| ||||||||| Sbjct 64414 GCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAACCAACTGAGCTAA 64473 Query 76858 GGGGCC 76863 || ||| Sbjct 64474 GGAGCC 64479 >seq4032 Length=2654 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 76390 ATTTGGCGACGATGGCAGGACTTGAACCTGCGACATATGGATTAACAGTCCACCGTTCTA 76449 |||||||||| ||| |||| |||| |||||||||||||||||||||||||||||||| Sbjct 1376 ATTTGGCGACCCATGCAAGACTCGAACTTGCGACATATGGATTAACAGTCCACCGTTCTA 1317 Query 76450 CCGACTGAACTA 76461 || ||||||||| Sbjct 1316 CCAACTGAACTA 1305 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 76390 ATTTGGCGACGATGGCAGGACTTGAACCTGCGACATATGGATTAACAGTCCACCGTTCTA 76449 |||||||||| ||| |||| |||| |||||||||||||||||||||||||||||||| Sbjct 1639 ATTTGGCGACCCATGCAAGACTCGAACTTGCGACATATGGATTAACAGTCCACCGTTCTA 1580 Query 76450 CCGACTGAACTA 76461 || ||||||||| Sbjct 1579 CCAACTGAACTA 1568 >seq2410 Length=3205 Score = 95.1 bits (104), Expect = 1e-14 Identities = 68/77 (88%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 76787 TTGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTAAC 76846 |||||| ||| ||||||||||||||||||||| | ||||||||||||| ||||||||| Sbjct 1027 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTGCTCTAAC 968 Query 76847 C-ACTGAGCTACGGGGC 76862 | ||||||||| ||||| Sbjct 967 CAACTGAGCTAAGGGGC 951 Score = 86.0 bits (94), Expect = 6e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 76799 GCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTAACC-ACTGAGCTAC 76857 ||||||||||||||||||||| | ||||||||||||| |||||||||| ||||||||| Sbjct 1846 GCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAACCAACTGAGCTAA 1787 Query 76858 GGGGCCAAAATT 76869 |||| | || || Sbjct 1786 GGGGGCTAACTT 1775 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 76788 TGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTAACC 76847 ||||| | | ||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct 2378 TGGTGCCTCCTGCTGGACTTGAACCAGCGACCTGACGATTATGAGTCGTATGCTCTAACC 2319 Query 76848 -ACTGAGCTACGGGGCCA 76864 ||||||||| |||| || Sbjct 2318 AACTGAGCTAAGGGGGCA 2301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 503062279434720