Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_025446.1
Length=157308
Score E
Sequences producing significant alignments: (Bits) Value
seq1262 96.9 3e-15
seq4032 95.1 1e-14
seq2410 95.1 1e-14
>seq1262
Length=72559
Score = 96.9 bits (106), Expect = 3e-15
Identities = 69/78 (88%), Gaps = 1/78 (1%)
Strand=Plus/Plus
Query 76787 TTGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTAAC 76846
|||||| ||| ||||||||||||||||||||| | ||||||||||||| |||||||||
Sbjct 63817 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAAC 63876
Query 76847 C-ACTGAGCTACGGGGCC 76863
| ||||||||| ||||||
Sbjct 63877 CAACTGAGCTAAGGGGCC 63894
Score = 87.8 bits (96), Expect = 2e-12
Identities = 54/58 (93%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 76404 GCAGGACTTGAACCTGCGACATATGGATTAACAGTCCACCGTTCTACCGACTGAACTA 76461
|| ||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 60754 GCTGGACTCGAACCAGCGACATATGGATTAACAGTCCACCGTTCTACCAACTGAACTA 60811
Score = 84.2 bits (92), Expect = 2e-11
Identities = 59/66 (89%), Gaps = 1/66 (2%)
Strand=Plus/Plus
Query 76799 GCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTAACC-ACTGAGCTAC 76857
||||||||||||||||||||| | ||||||||||||| |||||||||| |||||||||
Sbjct 64414 GCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAACCAACTGAGCTAA 64473
Query 76858 GGGGCC 76863
|| |||
Sbjct 64474 GGAGCC 64479
>seq4032
Length=2654
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 76390 ATTTGGCGACGATGGCAGGACTTGAACCTGCGACATATGGATTAACAGTCCACCGTTCTA 76449
|||||||||| ||| |||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1376 ATTTGGCGACCCATGCAAGACTCGAACTTGCGACATATGGATTAACAGTCCACCGTTCTA 1317
Query 76450 CCGACTGAACTA 76461
|| |||||||||
Sbjct 1316 CCAACTGAACTA 1305
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 76390 ATTTGGCGACGATGGCAGGACTTGAACCTGCGACATATGGATTAACAGTCCACCGTTCTA 76449
|||||||||| ||| |||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1639 ATTTGGCGACCCATGCAAGACTCGAACTTGCGACATATGGATTAACAGTCCACCGTTCTA 1580
Query 76450 CCGACTGAACTA 76461
|| |||||||||
Sbjct 1579 CCAACTGAACTA 1568
>seq2410
Length=3205
Score = 95.1 bits (104), Expect = 1e-14
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand=Plus/Minus
Query 76787 TTGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTAAC 76846
|||||| ||| ||||||||||||||||||||| | ||||||||||||| |||||||||
Sbjct 1027 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTGCTCTAAC 968
Query 76847 C-ACTGAGCTACGGGGC 76862
| ||||||||| |||||
Sbjct 967 CAACTGAGCTAAGGGGC 951
Score = 86.0 bits (94), Expect = 6e-12
Identities = 63/72 (88%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 76799 GCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTAACC-ACTGAGCTAC 76857
||||||||||||||||||||| | ||||||||||||| |||||||||| |||||||||
Sbjct 1846 GCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAACCAACTGAGCTAA 1787
Query 76858 GGGGCCAAAATT 76869
|||| | || ||
Sbjct 1786 GGGGGCTAACTT 1775
Score = 84.2 bits (92), Expect = 2e-11
Identities = 66/78 (85%), Gaps = 1/78 (1%)
Strand=Plus/Minus
Query 76788 TGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTAACC 76847
||||| | | ||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 2378 TGGTGCCTCCTGCTGGACTTGAACCAGCGACCTGACGATTATGAGTCGTATGCTCTAACC 2319
Query 76848 -ACTGAGCTACGGGGCCA 76864
||||||||| |||| ||
Sbjct 2318 AACTGAGCTAAGGGGGCA 2301
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 503062279434720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |