Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_025447.1
Length=348532
Score E
Sequences producing significant alignments: (Bits) Value
seq17421 168 1e-36
seq18712 86.0 1e-11
>seq17421
Length=2767
Score = 168 bits (186), Expect = 1e-36
Identities = 156/198 (79%), Gaps = 10/198 (5%)
Strand=Plus/Minus
Query 74696 AATTCCACAATCAGACGTATATGGTGTAAGCTACGTCGATGCAATCCAGAACAAGATCTC 74755
||||||||||||| ||||||||||||||| ||||| ||| ||||| | |
Sbjct 409 AATTCCACAATCAAACGTATATGGTGTAATTTACGTTGATAAAATCC---------TTTA 359
Query 74756 TGGTACTCTAGGAAGTGGTGAATGTTAACCTAGACGGGTTTGATAATTGGACGATAGGCA 74815
|||| | ||||||||||||| |||||| | |||| ||||| |||||||||| |||
Sbjct 358 AGGTAACCCTGGAAGTGGTGAATTGTAACCTGGGCGGGATTGATGTTTGGACGATAAGCA 299
Query 74816 ATTATTACTTGACTAGCAGGTTGAAACTAGAGGTGACAGTCCTTCACCAAACTGGAAAAC 74875
| |||| ||||| ||||| |||||||| ||||||||| |||||||||| ||||||||||
Sbjct 298 AACATTAGTTGACAAGCAGCTTGAAACTTGAGGTGACATTCCTTCACCATACTGGAAAAC 239
Query 74876 CGGATGGA-CTTTTATTT 74892
||| |||| |||| |||
Sbjct 238 CGGGTGGATATTTTCTTT 221
Score = 132 bits (146), Expect = 1e-25
Identities = 121/150 (81%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 74742 CAGAACAAGATCTCTGGTACTCTAGGAAGTGGTGAATGTTAACCTAGACGGGTTTGATAA 74801
|||||||||||||||| | || | ||||| ||| | || || ||||||||||
Sbjct 688 CAGAACAAGATCTCTGAAAACCTTAGCAGTGGGAAAT-TAGACTAAGGCGGGTTTGATGT 630
Query 74802 TTGGACGATAGGCAATTATTACTTGACTAGCAGGTTGAAACTAGAGGTGACAGTCCTTCA 74861
|| ||||||||| || |||| ||||| ||||| || ||||| ||||||||| |||||||
Sbjct 629 TTTGACGATAGGGAAACATTAGTTGACAAGCAGCTTAAAACTTGAGGTGACATTCCTTCA 570
Query 74862 CCAAACTGGAAAACCGGATGGACTT-TTAT 74890
|||||||||||||||||||||| || ||||
Sbjct 569 CCAAACTGGAAAACCGGATGGAATTATTAT 540
>seq18712
Length=4002
Score = 86.0 bits (94), Expect = 1e-11
Identities = 133/185 (72%), Gaps = 4/185 (2%)
Strand=Plus/Minus
Query 279397 CGCTGATCTATTTTTAGGAGTTCCATTTAATATCAGTAGT-TACTCACTACTAACTCATA 279455
||| ||| | || ||||| ||||| || ||||| |||| | || ||| | ||||||||||
Sbjct 3309 CGCAGATATGTTCTTAGGTGTTCCTTTCAATAT-AGTATTCTATTCAATGCTAACTCATA 3251
Query 279456 TGATTGCACAAATTACT-GGTTTAGATGTTGGTGAATTTATTTGGAATGGTGGTGATTGT 279514
| | || | | ||| ||| ||| || |||||||| || ||| ||||||||||||
Sbjct 3250 TTTTAGC-CGCAGAACTTGGTATAGGAGTAGGTGAATTCATATGGGTAGGTGGTGATTGT 3192
Query 279515 CACATTTATAAAAACCACGTTGAACAAGTAAAAGAACAACTACAGCGAAAACCTCGTGAA 279574
|| |||||| | || || |||| |||| | ||| ||| || ||| |||| |||
Sbjct 3191 CATATTTATGATAATCATATTGAGCAAGCATTAGAGCAATTAAGTAGAACCCCTCTTGAT 3132
Query 279575 TTACC 279579
| |||
Sbjct 3131 TCACC 3127
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1114727567820581
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |