Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_025447.1 Length=348532 Score E Sequences producing significant alignments: (Bits) Value seq17421 168 1e-36 seq18712 86.0 1e-11 >seq17421 Length=2767 Score = 168 bits (186), Expect = 1e-36 Identities = 156/198 (79%), Gaps = 10/198 (5%) Strand=Plus/Minus Query 74696 AATTCCACAATCAGACGTATATGGTGTAAGCTACGTCGATGCAATCCAGAACAAGATCTC 74755 ||||||||||||| ||||||||||||||| ||||| ||| ||||| | | Sbjct 409 AATTCCACAATCAAACGTATATGGTGTAATTTACGTTGATAAAATCC---------TTTA 359 Query 74756 TGGTACTCTAGGAAGTGGTGAATGTTAACCTAGACGGGTTTGATAATTGGACGATAGGCA 74815 |||| | ||||||||||||| |||||| | |||| ||||| |||||||||| ||| Sbjct 358 AGGTAACCCTGGAAGTGGTGAATTGTAACCTGGGCGGGATTGATGTTTGGACGATAAGCA 299 Query 74816 ATTATTACTTGACTAGCAGGTTGAAACTAGAGGTGACAGTCCTTCACCAAACTGGAAAAC 74875 | |||| ||||| ||||| |||||||| ||||||||| |||||||||| |||||||||| Sbjct 298 AACATTAGTTGACAAGCAGCTTGAAACTTGAGGTGACATTCCTTCACCATACTGGAAAAC 239 Query 74876 CGGATGGA-CTTTTATTT 74892 ||| |||| |||| ||| Sbjct 238 CGGGTGGATATTTTCTTT 221 Score = 132 bits (146), Expect = 1e-25 Identities = 121/150 (81%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 74742 CAGAACAAGATCTCTGGTACTCTAGGAAGTGGTGAATGTTAACCTAGACGGGTTTGATAA 74801 |||||||||||||||| | || | ||||| ||| | || || |||||||||| Sbjct 688 CAGAACAAGATCTCTGAAAACCTTAGCAGTGGGAAAT-TAGACTAAGGCGGGTTTGATGT 630 Query 74802 TTGGACGATAGGCAATTATTACTTGACTAGCAGGTTGAAACTAGAGGTGACAGTCCTTCA 74861 || ||||||||| || |||| ||||| ||||| || ||||| ||||||||| ||||||| Sbjct 629 TTTGACGATAGGGAAACATTAGTTGACAAGCAGCTTAAAACTTGAGGTGACATTCCTTCA 570 Query 74862 CCAAACTGGAAAACCGGATGGACTT-TTAT 74890 |||||||||||||||||||||| || |||| Sbjct 569 CCAAACTGGAAAACCGGATGGAATTATTAT 540 >seq18712 Length=4002 Score = 86.0 bits (94), Expect = 1e-11 Identities = 133/185 (72%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 279397 CGCTGATCTATTTTTAGGAGTTCCATTTAATATCAGTAGT-TACTCACTACTAACTCATA 279455 ||| ||| | || ||||| ||||| || ||||| |||| | || ||| | |||||||||| Sbjct 3309 CGCAGATATGTTCTTAGGTGTTCCTTTCAATAT-AGTATTCTATTCAATGCTAACTCATA 3251 Query 279456 TGATTGCACAAATTACT-GGTTTAGATGTTGGTGAATTTATTTGGAATGGTGGTGATTGT 279514 | | || | | ||| ||| ||| || |||||||| || ||| |||||||||||| Sbjct 3250 TTTTAGC-CGCAGAACTTGGTATAGGAGTAGGTGAATTCATATGGGTAGGTGGTGATTGT 3192 Query 279515 CACATTTATAAAAACCACGTTGAACAAGTAAAAGAACAACTACAGCGAAAACCTCGTGAA 279574 || |||||| | || || |||| |||| | ||| ||| || ||| |||| ||| Sbjct 3191 CATATTTATGATAATCATATTGAGCAAGCATTAGAGCAATTAAGTAGAACCCCTCTTGAT 3132 Query 279575 TTACC 279579 | ||| Sbjct 3131 TCACC 3127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1114727567820581