Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_025829.1 Length=164999 Score E Sequences producing significant alignments: (Bits) Value seq2789 131 2e-25 seq2410 84.2 2e-11 >seq2789 Length=15484 Score = 131 bits (144), Expect = 2e-25 Identities = 492/760 (65%), Gaps = 19/760 (3%) Strand=Plus/Plus Query 46024 ATGTCAGGATACATTCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTTC 46083 || ||||||||||||| || ||| ||| || || || || || || |||||||| || Sbjct 3132 ATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATTA 3191 Query 46084 GGATCATCTTTATAAAGATTAACACCCTCTTCAACGAACATAACAAGTTTAGGGAAAATA 46143 ||||| ||| ||| || |||| | | | ||||||||| || || | Sbjct 3192 GGATCGCTATTAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAATACT 3251 Query 46144 GGAGTTATCCCATCGCGACCAAGACCCTTAATACGATTTTTCAGAATTGCTTTCTGAATC 46203 | ||| | || || | || || || | ||| | | |||| ||| ||||| Sbjct 3252 GCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGAATT 3311 Query 46204 ATTCGTTCAG-TCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTTGTCC 46262 | || ||| | || | | | || ||||| || || ||||| || |||||||| Sbjct 3312 AATCTTTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTTGTCC 3370 Query 46263 GTTTGAACTAAAAAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACGTC 46322 |||| || | |||||| | ||||||||| | |||| || ||||| | || Sbjct 3371 ATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAAACATTC 3430 Query 46323 TTTTTCTGTTTTAGATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTGCGTC 46382 |||||| |||| | | |||| || | || | ||| | ||||||||| || Sbjct 3431 TTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTGTTTC 3490 Query 46383 CTCAATATGTTTTGCAT-AGGTGCGTTTAACATAAGGAG--AAAGTACTTTATCTACATT 46439 | ||| ||| | || || |||| ||||||| | ||| || | ||| | ||| Sbjct 3491 TTTAATTAACTTTATTTCAGAAGCTTTTA-CATAAGGGGCTAAAATAAT--ATCGATATT 3547 Query 46440 CGCAAAAGTTGTTCCGCCATATTGATGGGAAGCAACCTGCGCAGTAATTTGTGCCATAAT 46499 || |||||||| ||||| ||| || || ||||| | ||||| || | || Sbjct 3548 GTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAGTTAT 3607 Query 46500 TGCAGTAGCAACGCCGATTGATTTAGGAGTTTCAATCTGTGCATTGCCGAGCTTAAATCC 46559 || || || || ||||| ||||||||||| | ||||| || | ||||| || Sbjct 3608 AGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAAAGCC 3667 Query 46560 GTTTTCAAGCATTCCTTTTAAATCTACTAAACAGCAATTAGTAAATGGAAGAGCAGGGGA 46619 ||||||||||||||||||||| ||||| |||||| | ||||| | || || Sbjct 3668 ACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAATGGTGA 3727 Query 46620 ATAATCAATATCATGGAAATGGATAATTCCGCTTTCATGCGCTTTCATAATAAAAGAC-- 46677 |||||| | |||||| |||| || || ||||||| || ||| | | | | | Sbjct 3728 ATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--ACGTCTT 3783 Query 46678 --GGGACCAT---ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTCCCGTT 46732 || | || |||||| ||| |||||||| | |||||||| | | || | || Sbjct 3784 TGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATCTCTTT 3843 Query 46733 GAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTT 46772 ||||||||| |||| ||||||||||||||| || || Sbjct 3844 GAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATT 3883 >seq2410 Length=3205 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/152 (75%), Gaps = 8/152 (5%) Strand=Plus/Minus Query 73808 TTGGTGGCCCTGGGTGGAATTGAACCACC-ATCTGGCGATTATGAGTCGCTTGCTTGAAC 73866 |||||||||| | |||| |||||||| | | || ||||||||||||| ||||| ||| Sbjct 1027 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTGCTCTAAC 968 Query 73867 CTTC-CAGCTACAGGGCCTTGGT--GCTGATTGACGGAATCGAACCGCCGACCTTCTCAT 73923 | | ||||| |||| | |||| |||| | ||| ||||||| ||||| || | Sbjct 967 CAACTGAGCTA-AGGGGCGTGGTACGCTG--TATAGGATTCGAACCTATGACCTACTGCT 911 Query 73924 TACAAGTGAGTTGCTCTA-CCTACTGAGCTAA 73954 || ||| |||||||||| || |||||||||| Sbjct 910 TAGAAGGCAGTTGCTCTATCCAACTGAGCTAA 879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 527663927520360