Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_025830.1
Length=120938
Score E
Sequences producing significant alignments: (Bits) Value
seq1262 116 3e-21
seq2410 109 4e-19
>seq1262
Length=72559
Score = 116 bits (128), Expect = 3e-21
Identities = 75/81 (93%), Gaps = 1/81 (1%)
Strand=Plus/Plus
Query 9583 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCACCTGCTCTAAC 9642
||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||
Sbjct 63817 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAAC 63876
Query 9643 C-ACTGAGCTAAGGGGCCGTA 9662
| |||||||||||||||||||
Sbjct 63877 CAACTGAGCTAAGGGGCCGTA 63897
Score = 89.7 bits (98), Expect = 4e-13
Identities = 62/69 (90%), Gaps = 1/69 (1%)
Strand=Plus/Plus
Query 9592 CCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCACCTGCTCTAACC-ACTGAGC 9650
|||||||||||||||||||||||| | |||||||||||| |||||||||| |||||||
Sbjct 64411 CCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAACCAACTGAGC 64470
Query 9651 TAAGGGGCC 9659
||||| |||
Sbjct 64471 TAAGGAGCC 64479
>seq2410
Length=3205
Score = 109 bits (120), Expect = 4e-19
Identities = 71/77 (92%), Gaps = 1/77 (1%)
Strand=Plus/Minus
Query 9583 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCACCTGCTCTAAC 9642
||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||
Sbjct 1027 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTGCTCTAAC 968
Query 9643 C-ACTGAGCTAAGGGGC 9658
| |||||||||||||||
Sbjct 967 CAACTGAGCTAAGGGGC 951
Score = 93.3 bits (102), Expect = 3e-14
Identities = 80/95 (84%), Gaps = 3/95 (3%)
Strand=Plus/Minus
Query 9592 CCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCACCTGCTCTAACC-ACTGAGC 9650
|||||||||||||||||||||||| | |||||||||||| |||||||||| |||||||
Sbjct 1849 CCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAACCAACTGAGC 1790
Query 9651 TAAGGGGCCGTATCTCTTTGGTATGAGATGATATT 9685
||||||| | || || ||| || | | || |||||
Sbjct 1789 TAAGGGGGC-TAACT-TTTTGTTTTATATCATATT 1757
Score = 93.3 bits (102), Expect = 3e-14
Identities = 70/81 (86%), Gaps = 1/81 (1%)
Strand=Plus/Minus
Query 9584 TGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCACCTGCTCTAACC 9643
||||| | |||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 2378 TGGTGCCTCCTGCTGGACTTGAACCAGCGACCTGACGATTATGAGTCGTATGCTCTAACC 2319
Query 9644 -ACTGAGCTAAGGGGCCGTAT 9663
|||||||||||||| | |||
Sbjct 2318 AACTGAGCTAAGGGGGCATAT 2298
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 386730402071011
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |