Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_025830.1 Length=120938 Score E Sequences producing significant alignments: (Bits) Value seq1262 116 3e-21 seq2410 109 4e-19 >seq1262 Length=72559 Score = 116 bits (128), Expect = 3e-21 Identities = 75/81 (93%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 9583 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCACCTGCTCTAAC 9642 ||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| Sbjct 63817 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAAC 63876 Query 9643 C-ACTGAGCTAAGGGGCCGTA 9662 | ||||||||||||||||||| Sbjct 63877 CAACTGAGCTAAGGGGCCGTA 63897 Score = 89.7 bits (98), Expect = 4e-13 Identities = 62/69 (90%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 9592 CCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCACCTGCTCTAACC-ACTGAGC 9650 |||||||||||||||||||||||| | |||||||||||| |||||||||| ||||||| Sbjct 64411 CCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAACCAACTGAGC 64470 Query 9651 TAAGGGGCC 9659 ||||| ||| Sbjct 64471 TAAGGAGCC 64479 >seq2410 Length=3205 Score = 109 bits (120), Expect = 4e-19 Identities = 71/77 (92%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 9583 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCACCTGCTCTAAC 9642 ||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| Sbjct 1027 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTGCTCTAAC 968 Query 9643 C-ACTGAGCTAAGGGGC 9658 | ||||||||||||||| Sbjct 967 CAACTGAGCTAAGGGGC 951 Score = 93.3 bits (102), Expect = 3e-14 Identities = 80/95 (84%), Gaps = 3/95 (3%) Strand=Plus/Minus Query 9592 CCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCACCTGCTCTAACC-ACTGAGC 9650 |||||||||||||||||||||||| | |||||||||||| |||||||||| ||||||| Sbjct 1849 CCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAACCAACTGAGC 1790 Query 9651 TAAGGGGCCGTATCTCTTTGGTATGAGATGATATT 9685 ||||||| | || || ||| || | | || ||||| Sbjct 1789 TAAGGGGGC-TAACT-TTTTGTTTTATATCATATT 1757 Score = 93.3 bits (102), Expect = 3e-14 Identities = 70/81 (86%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 9584 TGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCACCTGCTCTAACC 9643 ||||| | |||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 2378 TGGTGCCTCCTGCTGGACTTGAACCAGCGACCTGACGATTATGAGTCGTATGCTCTAACC 2319 Query 9644 -ACTGAGCTAAGGGGCCGTAT 9663 |||||||||||||| | ||| Sbjct 2318 AACTGAGCTAAGGGGGCATAT 2298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 386730402071011