Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_026607.2
Length=159914
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 217 2e-51
seq1262 123 3e-23
seq2410 113 5e-20
>seq2789
Length=15484
Score = 217 bits (240), Expect = 2e-51
Identities = 696/1063 (65%), Gaps = 49/1063 (5%)
Strand=Plus/Plus
Query 37715 ATTCCGATATATCCAAGCGAAATAGAACTTCTACCATTTTTAAACAACTCAATGATTTCA 37774
||||| ||||| || | ||||| || ||| ||||||||||| | ||||| || |||
Sbjct 2742 ATTCCTATATAGCCTAATGAAATTGATGCTCTTCCATTTTTAAAAATTTCAATAATATCA 2801
Query 37775 TCATCCGGTTTCATTCGAACGCCAAAAGCTCCTTCTTGATACAGAATCGGAGCCACAGAA 37834
|| || || || | || | || |||| ||||| ||||| || || || || |
Sbjct 2802 TCTTCTGGATTAAGTCTTATTCCGCAAGCACCTTCAGTATACAATATGGGGGCAACCTTA 2861
Query 37835 GCTTTTACACCTTTTAACGATTCAATACGAAGCAGCAGCGCGTCTTTACAAATCTTCATT 37894
|||||||||||||| | | |||||| | || | | | |||| ||| || | |
Sbjct 2862 GCTTTTACACCTTTGAGCCTTTCAATTCTTGTCATTAATGATTTTTTAGCAATATTTAAT 2921
Query 37895 CGGCAGTCTAGTAGATGCATGAACATGTTTAAATCTGTTTTGCCGTTGACCTGAGAATCC 37954
| |||| || | || || | || ||| || || |||| ||
Sbjct 2922 CTTTTTTCTAATATAAA-ATTAAATTTTTCAAAA-----TTACCACAT-CCTGCT--TCA 2972
Query 37955 AAAGCTATACGAGGAAGATTTAATGTAACAACACCTAAATTATTGCGTCCGTCAAGAATA 38014
| ||||| | |||| |||||| |||| |||||||||||||| | ||| || |||||
Sbjct 2973 ATTGCTATTCTGGGAATATTTAAACTAACCACACCTAAATTATTTCTTCCATCGTGAATA 3032
Query 38015 AATTTACCATCGGAATTTTTCCATGCGCTCAAA--AAGCTTCTGCACCCCATTGGAGA-- 38070
||||||| || || ||| | ||| |||||||||||||||||||| |
Sbjct 3033 CTATTACCATTTTCATCTT--CATAAACAGAAAGGAAGCTTCTGCACCCCATTGGCGTCT 3090
Query 38071 TACAGGAATAGGAGAACCAGTAATCTTACGATTATTTTTGGCGC-TAAT----AATATCG 38125
|| ||||| ||||| || || | | || || | |||| ||||||
Sbjct 3091 TAAAGGAA--------CCAGTTGTCCTAACA--ACTT---GCTCATAATTTAAAATATCA 3137
Query 38126 GGATACATTCGCTTAGAAGCGCATTCTAAAGCTAGTTGTTTGATATCATAATTTGGGTC- 38184
||||||||||| | | | ||||| | || |||||||| ||||||||||| || ||
Sbjct 3138 GGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATTAGGATCG 3197
Query 38185 ---TTCACTGTGGAGATTTAAACCTTCTTCAACGAACATAACCAATTTAGGAAAAATTGG 38241
|| | | | |||| ||||||| | | | ||| | ||| ||||| | ||
Sbjct 3198 CTATTAATTCT----ATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAATACTGC 3253
Query 38242 AGTAATTCCATGACGACCTAATCCTCGAATACGATTTTTAAGAATAGCTTGTTGAATTAG 38301
|| || || ||||| || || | ||| | | || | || ||||||||
Sbjct 3254 CGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGAATTAA 3313
Query 38302 TTTTTCTTCCCAAGATGTCCCCATACCAAATGTAATGGTAACGAAAGGCGTTTGGCCGTT 38361
| |||| || | | || | ||||| || ||||| || || ||||| || ||
Sbjct 3314 TCTTTCCTCTTTTGTAATTCCAAGTCCAAAACCAAAAGTAACAAATGGGGTTTGTCCATT 3373
Query 38362 AGAGCT--GAAAAGTGTATTAACTTCATATTCATATCCTTGAAAAGCATCGAATACAT-C 38418
| | | | ||||| ||||| ||||||||| |||||||||||||||| || |||| |
Sbjct 3374 TGCGGTATGCAAAGT--ATTAATTTCATATTCTAATCCTTGAAAAGCATCAAA-ACATTC 3430
Query 38419 TTTTTCTGTTTTCTCTTGAGCATATAATTCAGCGTCCGTAATATGATATCGGCGAGCGTC 38478
|||||| |||| || | | ||||| || | | | |||| |||| | ||
Sbjct 3431 TTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTGTTTC 3490
Query 38479 TTCGAT-ATGTTTGTTGAAAGTTGCTTCTACATAAGGAGCTAGTACTTGGTCAACATTAG 38537
|| || | ||| || | | |||| ||||||||| |||| | || | |||
Sbjct 3491 TTTAATTAACTTTATTTCA-GAAGCTTTTACATAAGGGGCTAAAATAATATCGATATTGT 3549
Query 38538 CAAATGTAGTTCCACCATATTGATGAGAAGCTACTTGAGCTGTAATTTGAGCCATTACGG 38597
|| || ||||||||||| |||| || ||||| ||| | |||||||| ||| |
Sbjct 3550 TAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAGTTATAG 3609
Query 38598 CAGTTGCTACACCGATTGAATTTGATGTTTCAATTTCAGCATTACCGAGTTTAAACCCAT 38657
| |||||| || |||||| || ||||||||||||||||| || | |||||| |||
Sbjct 3610 CCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAAAGCCAC 3669
Query 38658 TTTGAAGCATTCCGGCTAAATCTACTAAGCAACAGTTAGTAAACGGAAGCGATGGTGAAT 38717
|| ||||||||| |||||| ||||| ||| ||| | |||| |||||||||
Sbjct 3670 CTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAATGGTGAAT 3729
Query 38718 AATCCATGTCATGAAAATGGATAATTCCTTTATCATGAGCATC 38760
|||| | |||||| |||| || ||||| |||||||| ||
Sbjct 3730 AATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGCGTC 3772
>seq1262
Length=72559
Score = 123 bits (136), Expect = 3e-23
Identities = 78/83 (94%), Gaps = 1/83 (1%)
Strand=Plus/Plus
Query 62448 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAAC 62507
||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||
Sbjct 63817 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAAC 63876
Query 62508 C-ACTGAGCTAAGGGGCCGTAAT 62529
| |||||||||||||||||||||
Sbjct 63877 CAACTGAGCTAAGGGGCCGTAAT 63899
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 62457 CCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC-ACTGAGC 62515
|||||||||||||||||||||||| | ||||||||||||| |||||||||| |||||||
Sbjct 64411 CCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAACCAACTGAGC 64470
Query 62516 TAAGGGGCCGTAATT 62530
||||| ||| | |||
Sbjct 64471 TAAGGAGCCTTTATT 64485
>seq2410
Length=3205
Score = 113 bits (124), Expect = 5e-20
Identities = 72/77 (94%), Gaps = 1/77 (1%)
Strand=Plus/Minus
Query 62448 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAAC 62507
||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||
Sbjct 1027 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTGCTCTAAC 968
Query 62508 C-ACTGAGCTAAGGGGC 62523
| |||||||||||||||
Sbjct 967 CAACTGAGCTAAGGGGC 951
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 62449 TGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 62508
||||| | |||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 2378 TGGTGCCTCCTGCTGGACTTGAACCAGCGACCTGACGATTATGAGTCGTATGCTCTAACC 2319
Query 62509 -ACTGAGCTAAGGGG 62522
||||||||||||||
Sbjct 2318 AACTGAGCTAAGGGG 2304
Score = 95.1 bits (104), Expect = 1e-14
Identities = 62/67 (93%), Gaps = 1/67 (1%)
Strand=Plus/Minus
Query 62457 CCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC-ACTGAGC 62515
|||||||||||||||||||||||| | ||||||||||||| |||||||||| |||||||
Sbjct 1849 CCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAACCAACTGAGC 1790
Query 62516 TAAGGGG 62522
|||||||
Sbjct 1789 TAAGGGG 1783
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511398242886960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |