Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_026607.2 Length=159914 Score E Sequences producing significant alignments: (Bits) Value seq2789 217 2e-51 seq1262 123 3e-23 seq2410 113 5e-20 >seq2789 Length=15484 Score = 217 bits (240), Expect = 2e-51 Identities = 696/1063 (65%), Gaps = 49/1063 (5%) Strand=Plus/Plus Query 37715 ATTCCGATATATCCAAGCGAAATAGAACTTCTACCATTTTTAAACAACTCAATGATTTCA 37774 ||||| ||||| || | ||||| || ||| ||||||||||| | ||||| || ||| Sbjct 2742 ATTCCTATATAGCCTAATGAAATTGATGCTCTTCCATTTTTAAAAATTTCAATAATATCA 2801 Query 37775 TCATCCGGTTTCATTCGAACGCCAAAAGCTCCTTCTTGATACAGAATCGGAGCCACAGAA 37834 || || || || | || | || |||| ||||| ||||| || || || || | Sbjct 2802 TCTTCTGGATTAAGTCTTATTCCGCAAGCACCTTCAGTATACAATATGGGGGCAACCTTA 2861 Query 37835 GCTTTTACACCTTTTAACGATTCAATACGAAGCAGCAGCGCGTCTTTACAAATCTTCATT 37894 |||||||||||||| | | |||||| | || | | | |||| ||| || | | Sbjct 2862 GCTTTTACACCTTTGAGCCTTTCAATTCTTGTCATTAATGATTTTTTAGCAATATTTAAT 2921 Query 37895 CGGCAGTCTAGTAGATGCATGAACATGTTTAAATCTGTTTTGCCGTTGACCTGAGAATCC 37954 | |||| || | || || | || ||| || || |||| || Sbjct 2922 CTTTTTTCTAATATAAA-ATTAAATTTTTCAAAA-----TTACCACAT-CCTGCT--TCA 2972 Query 37955 AAAGCTATACGAGGAAGATTTAATGTAACAACACCTAAATTATTGCGTCCGTCAAGAATA 38014 | ||||| | |||| |||||| |||| |||||||||||||| | ||| || ||||| Sbjct 2973 ATTGCTATTCTGGGAATATTTAAACTAACCACACCTAAATTATTTCTTCCATCGTGAATA 3032 Query 38015 AATTTACCATCGGAATTTTTCCATGCGCTCAAA--AAGCTTCTGCACCCCATTGGAGA-- 38070 ||||||| || || ||| | ||| |||||||||||||||||||| | Sbjct 3033 CTATTACCATTTTCATCTT--CATAAACAGAAAGGAAGCTTCTGCACCCCATTGGCGTCT 3090 Query 38071 TACAGGAATAGGAGAACCAGTAATCTTACGATTATTTTTGGCGC-TAAT----AATATCG 38125 || ||||| ||||| || || | | || || | |||| |||||| Sbjct 3091 TAAAGGAA--------CCAGTTGTCCTAACA--ACTT---GCTCATAATTTAAAATATCA 3137 Query 38126 GGATACATTCGCTTAGAAGCGCATTCTAAAGCTAGTTGTTTGATATCATAATTTGGGTC- 38184 ||||||||||| | | | ||||| | || |||||||| ||||||||||| || || Sbjct 3138 GGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATTAGGATCG 3197 Query 38185 ---TTCACTGTGGAGATTTAAACCTTCTTCAACGAACATAACCAATTTAGGAAAAATTGG 38241 || | | | |||| ||||||| | | | ||| | ||| ||||| | || Sbjct 3198 CTATTAATTCT----ATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAATACTGC 3253 Query 38242 AGTAATTCCATGACGACCTAATCCTCGAATACGATTTTTAAGAATAGCTTGTTGAATTAG 38301 || || || ||||| || || | ||| | | || | || |||||||| Sbjct 3254 CGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGAATTAA 3313 Query 38302 TTTTTCTTCCCAAGATGTCCCCATACCAAATGTAATGGTAACGAAAGGCGTTTGGCCGTT 38361 | |||| || | | || | ||||| || ||||| || || ||||| || || Sbjct 3314 TCTTTCCTCTTTTGTAATTCCAAGTCCAAAACCAAAAGTAACAAATGGGGTTTGTCCATT 3373 Query 38362 AGAGCT--GAAAAGTGTATTAACTTCATATTCATATCCTTGAAAAGCATCGAATACAT-C 38418 | | | | ||||| ||||| ||||||||| |||||||||||||||| || |||| | Sbjct 3374 TGCGGTATGCAAAGT--ATTAATTTCATATTCTAATCCTTGAAAAGCATCAAA-ACATTC 3430 Query 38419 TTTTTCTGTTTTCTCTTGAGCATATAATTCAGCGTCCGTAATATGATATCGGCGAGCGTC 38478 |||||| |||| || | | ||||| || | | | |||| |||| | || Sbjct 3431 TTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTGTTTC 3490 Query 38479 TTCGAT-ATGTTTGTTGAAAGTTGCTTCTACATAAGGAGCTAGTACTTGGTCAACATTAG 38537 || || | ||| || | | |||| ||||||||| |||| | || | ||| Sbjct 3491 TTTAATTAACTTTATTTCA-GAAGCTTTTACATAAGGGGCTAAAATAATATCGATATTGT 3549 Query 38538 CAAATGTAGTTCCACCATATTGATGAGAAGCTACTTGAGCTGTAATTTGAGCCATTACGG 38597 || || ||||||||||| |||| || ||||| ||| | |||||||| ||| | Sbjct 3550 TAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAGTTATAG 3609 Query 38598 CAGTTGCTACACCGATTGAATTTGATGTTTCAATTTCAGCATTACCGAGTTTAAACCCAT 38657 | |||||| || |||||| || ||||||||||||||||| || | |||||| ||| Sbjct 3610 CCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAAAGCCAC 3669 Query 38658 TTTGAAGCATTCCGGCTAAATCTACTAAGCAACAGTTAGTAAACGGAAGCGATGGTGAAT 38717 || ||||||||| |||||| ||||| ||| ||| | |||| ||||||||| Sbjct 3670 CTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAATGGTGAAT 3729 Query 38718 AATCCATGTCATGAAAATGGATAATTCCTTTATCATGAGCATC 38760 |||| | |||||| |||| || ||||| |||||||| || Sbjct 3730 AATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGCGTC 3772 >seq1262 Length=72559 Score = 123 bits (136), Expect = 3e-23 Identities = 78/83 (94%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 62448 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAAC 62507 ||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||| Sbjct 63817 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAAC 63876 Query 62508 C-ACTGAGCTAAGGGGCCGTAAT 62529 | ||||||||||||||||||||| Sbjct 63877 CAACTGAGCTAAGGGGCCGTAAT 63899 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 62457 CCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC-ACTGAGC 62515 |||||||||||||||||||||||| | ||||||||||||| |||||||||| ||||||| Sbjct 64411 CCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAACCAACTGAGC 64470 Query 62516 TAAGGGGCCGTAATT 62530 ||||| ||| | ||| Sbjct 64471 TAAGGAGCCTTTATT 64485 >seq2410 Length=3205 Score = 113 bits (124), Expect = 5e-20 Identities = 72/77 (94%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 62448 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAAC 62507 ||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||| Sbjct 1027 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTGCTCTAAC 968 Query 62508 C-ACTGAGCTAAGGGGC 62523 | ||||||||||||||| Sbjct 967 CAACTGAGCTAAGGGGC 951 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 62449 TGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 62508 ||||| | |||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct 2378 TGGTGCCTCCTGCTGGACTTGAACCAGCGACCTGACGATTATGAGTCGTATGCTCTAACC 2319 Query 62509 -ACTGAGCTAAGGGG 62522 |||||||||||||| Sbjct 2318 AACTGAGCTAAGGGG 2304 Score = 95.1 bits (104), Expect = 1e-14 Identities = 62/67 (93%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 62457 CCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC-ACTGAGC 62515 |||||||||||||||||||||||| | ||||||||||||| |||||||||| ||||||| Sbjct 1849 CCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAACCAACTGAGC 1790 Query 62516 TAAGGGG 62522 ||||||| Sbjct 1789 TAAGGGG 1783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511398242886960