Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq4853 206 3e-48 >seq4853 Length=2014 Score = 206 bits (228), Expect = 3e-48 Identities = 890/1391 (64%), Gaps = 22/1391 (2%) Strand=Plus/Minus Query 7524 CTACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGT 7583 ||| || ||||||||||| || ||| | || || |||||| | ||| |||| || Sbjct 1382 CTATTTATTGAAAATCAATGGGGAAATTGTCGAGCGTCCTCAACATCTACTGATGCGTGT 1323 Query 7584 GGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTC 7643 ||| |||||||| |||||||| || || || || ||| | ||||| ||| | | | || Sbjct 1322 GGCTGTGGGCATACACGGCGAGGATATCGATGCGGCCATAGAAACCTACAATTTACTATC 1263 Query 7644 TTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAA-ACGCGCCTC 7702 | | ||||| ||||| || ||||| | || || || | ||||| |||| || | Sbjct 1262 AGAGCGCTATTTTACTCACGCCTCTCCCACGCTATTCGCTGCAGCCACAAGACGC-CCAC 1204 Query 7703 AATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAA-C 7761 || ||||||| ||||| |||| || ||| | ||| |||||| || |||| ||| Sbjct 1203 AACTGTCCTCCTGTTTCCTGCTCACTATGGTTGCTGACTCCATCGAGGGTATTTTCAAGT 1144 Query 7762 ACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAAC 7821 || | || | ||||||| || ||||| | || ||||| || || ||||| || | Sbjct 1143 CCGTAGAGC-AATGCGCCATGATCTCCAAGTCCGCAGGCGGCATTGGCCTGAATGTGCAT 1085 Query 7822 GACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAG 7881 | | |||||||| || | |||| | ||| || || | | | ||||||| | Sbjct 1084 TGCATACGCGCCAAAGGCACGGGCATTGCTGGCACGAATGGCACCTCTAATGGTTTAGTG 1025 Query 7882 CCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAG---GGGGGAAAGCGC 7938 || ||| |||| ||||||||||||| || ||| | || || ||| || || || || Sbjct 1024 CCTATGCTGCGTGTGTTCAATAACGTGGCGCGCTACGTGGATCAGGGAGGCGGCAAACGT 965 Query 7939 AAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAAT 7998 ||| ||| |||||||||||||| || |||||| |||| || | | | | || Sbjct 964 CCAGGTGCCTTCGCCATCTATTTGGAACCCTGGCACTCGGATATATTTGAGTTTTTGGAT 905 Query 7999 CTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCGATCTATTCTTCGGATTGTGG 8058 || || | || ||||| || || ||| |||||| | ||||| Sbjct 904 TTGAAGAAAAATACTGGCAAGGAAGAGTATCGTGCACGAGATTTATTCTATGCTCTGTGG 845 Query 8059 GTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCC 8118 | ||||| |||| |||| || || | || | | ||||| ||||||||||| Sbjct 844 ATACCCGACTTGTTCATGAAACGTGTGGAGGCAGATGGCGATTGGTCACTCATGTGCCCA 785 Query 8119 GATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAA 8178 | ||||| | || | | |||| ||| | |||| || ||| | || | || Sbjct 784 CACAAGTGCCCCGGACTACATGAAGTTTGGGGTGAAGAATTCGAGCAACTTTATGAGAAA 725 Query 8179 TACGAACACGACGGCGCGTACGTGCGGCA-AGTGAAAGCGCGCGACCTGCACCGCGCCAT 8237 || || | || || ||| | ||| || ||||| | | || ||||| Sbjct 724 TATGAGCGTGAAGG-TCGTGCCAATCGCACTGTTAAAGCTCAAACCTTGTGGTTTGCCAT 666 Query 8238 TATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGC 8297 ||| || |||| ||||| || | || || ||||| || || || ||||| || Sbjct 665 TATAGAGGCTCAAGTGGAAACTGGCACTCCATATATGCTCTATAAGGATGCTTGTAATCG 606 Query 8298 CAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGT 8357 ||| || |||||| || | ||||| || ||||||||| | ||| |||||||||| Sbjct 605 CAAGAGTAATCAACAGAATCTAGGCACTATCAAGTGCAGCAATTTATGCACTGAAATTGT 546 Query 8358 ACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAACGC 8417 | | || || || || ||| | || ||||| ||| |||| || | | || Sbjct 545 AGAATATTCGGCACCGGATGAAATTGCTGTTTGTAATTTAGCCTCAATTGCACTCAATAT 486 Query 8418 GTTCGTTGATCGACGCTCAAACACTTACGACTTTGAACAATTGAAAAACGCCGTGCAA-- 8475 ||| || | | | | || ||||| || ||| || || | ||| | | | || Sbjct 485 GTTTGTCAACCCAGAC---AAGACTTATGATTTTAAAAAACTCAAAGAAGTTGCTAAAAT 429 Query 8476 -GTGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAG- 8533 || || ||| ||||| | ||||| || |||||| || || || || | Sbjct 428 TGTAAC---ACGTAATTTGAACAAAATCATAGACATCAATTACTACCCGCTGCCGGAGGC 372 Query 8534 CGCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACG 8593 | |||| || || ||||| || | ||| | || | || || ||||| | || || | Sbjct 371 CAAGCGT-TCAAATATGCGTCATCGTCCCATAGGTATTGGAGTACAAGGATTCGCAGATG 313 Query 8594 CGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAA 8653 | || | |||| || || ||||| | ||||| | ||| || | ||| Sbjct 312 CATTGATACTCATGCGTTATCCATATGAAAGTGAGGAAGCATTTAAGCTAAATCAACAAA 253 Query 8654 TAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGAA-TTG 8712 || |||||| | ||||| || || || |||||||||||| | ||| | ||||| || Sbjct 252 TATTTGAAACGATTTATTATGGTGCCTTGGAAGCCAGCTGT-GAGTTGGCTGAGAAGCTG 194 Query 8713 GGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATG 8772 || | || ||| | || |||||| |||| |||| ||||| || || || || ||| Sbjct 193 GGTCCCTATGAAACTTATGCGGGCTCACCTGTCAGCAAGGGAATTTTACAGTATGATATG 134 Query 8773 TGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAA 8832 ||| | || || || | | ||||||||| || |||| ||||||||| || Sbjct 133 TGGCAAAAAACACCTACTGATCTATGGAATTGGGCGGAGCTGAAGGAGAAAATTGCTAAA 74 Query 8833 TTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATA 8892 || |||| ||||| || | | || ||||| || ||| | ||||| ||||| Sbjct 73 CATGGCGTGCGTAATTCTTTGCTCATTGCACCAATGCCTACAGCCTCCACTGCACAAATC 14 Query 8893 ATGGGAAACAA 8903 ||||| || || Sbjct 13 ATGGGCAATAA 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505202248563480