Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq4853 206 3e-48
>seq4853
Length=2014
Score = 206 bits (228), Expect = 3e-48
Identities = 890/1391 (64%), Gaps = 22/1391 (2%)
Strand=Plus/Minus
Query 7524 CTACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGT 7583
||| || ||||||||||| || ||| | || || |||||| | ||| |||| ||
Sbjct 1382 CTATTTATTGAAAATCAATGGGGAAATTGTCGAGCGTCCTCAACATCTACTGATGCGTGT 1323
Query 7584 GGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTC 7643
||| |||||||| |||||||| || || || || ||| | ||||| ||| | | | ||
Sbjct 1322 GGCTGTGGGCATACACGGCGAGGATATCGATGCGGCCATAGAAACCTACAATTTACTATC 1263
Query 7644 TTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAA-ACGCGCCTC 7702
| | ||||| ||||| || ||||| | || || || | ||||| |||| || |
Sbjct 1262 AGAGCGCTATTTTACTCACGCCTCTCCCACGCTATTCGCTGCAGCCACAAGACGC-CCAC 1204
Query 7703 AATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAA-C 7761
|| ||||||| ||||| |||| || ||| | ||| |||||| || |||| |||
Sbjct 1203 AACTGTCCTCCTGTTTCCTGCTCACTATGGTTGCTGACTCCATCGAGGGTATTTTCAAGT 1144
Query 7762 ACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAAC 7821
|| | || | ||||||| || ||||| | || ||||| || || ||||| || |
Sbjct 1143 CCGTAGAGC-AATGCGCCATGATCTCCAAGTCCGCAGGCGGCATTGGCCTGAATGTGCAT 1085
Query 7822 GACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAG 7881
| | |||||||| || | |||| | ||| || || | | | ||||||| |
Sbjct 1084 TGCATACGCGCCAAAGGCACGGGCATTGCTGGCACGAATGGCACCTCTAATGGTTTAGTG 1025
Query 7882 CCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAG---GGGGGAAAGCGC 7938
|| ||| |||| ||||||||||||| || ||| | || || ||| || || || ||
Sbjct 1024 CCTATGCTGCGTGTGTTCAATAACGTGGCGCGCTACGTGGATCAGGGAGGCGGCAAACGT 965
Query 7939 AAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAAT 7998
||| ||| |||||||||||||| || |||||| |||| || | | | | ||
Sbjct 964 CCAGGTGCCTTCGCCATCTATTTGGAACCCTGGCACTCGGATATATTTGAGTTTTTGGAT 905
Query 7999 CTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCGATCTATTCTTCGGATTGTGG 8058
|| || | || ||||| || || ||| |||||| | |||||
Sbjct 904 TTGAAGAAAAATACTGGCAAGGAAGAGTATCGTGCACGAGATTTATTCTATGCTCTGTGG 845
Query 8059 GTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCC 8118
| ||||| |||| |||| || || | || | | ||||| |||||||||||
Sbjct 844 ATACCCGACTTGTTCATGAAACGTGTGGAGGCAGATGGCGATTGGTCACTCATGTGCCCA 785
Query 8119 GATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAA 8178
| ||||| | || | | |||| ||| | |||| || ||| | || | ||
Sbjct 784 CACAAGTGCCCCGGACTACATGAAGTTTGGGGTGAAGAATTCGAGCAACTTTATGAGAAA 725
Query 8179 TACGAACACGACGGCGCGTACGTGCGGCA-AGTGAAAGCGCGCGACCTGCACCGCGCCAT 8237
|| || | || || ||| | ||| || ||||| | | || |||||
Sbjct 724 TATGAGCGTGAAGG-TCGTGCCAATCGCACTGTTAAAGCTCAAACCTTGTGGTTTGCCAT 666
Query 8238 TATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGC 8297
||| || |||| ||||| || | || || ||||| || || || ||||| ||
Sbjct 665 TATAGAGGCTCAAGTGGAAACTGGCACTCCATATATGCTCTATAAGGATGCTTGTAATCG 606
Query 8298 CAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGT 8357
||| || |||||| || | ||||| || ||||||||| | ||| ||||||||||
Sbjct 605 CAAGAGTAATCAACAGAATCTAGGCACTATCAAGTGCAGCAATTTATGCACTGAAATTGT 546
Query 8358 ACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAACGC 8417
| | || || || || ||| | || ||||| ||| |||| || | | ||
Sbjct 545 AGAATATTCGGCACCGGATGAAATTGCTGTTTGTAATTTAGCCTCAATTGCACTCAATAT 486
Query 8418 GTTCGTTGATCGACGCTCAAACACTTACGACTTTGAACAATTGAAAAACGCCGTGCAA-- 8475
||| || | | | | || ||||| || ||| || || | ||| | | | ||
Sbjct 485 GTTTGTCAACCCAGAC---AAGACTTATGATTTTAAAAAACTCAAAGAAGTTGCTAAAAT 429
Query 8476 -GTGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAG- 8533
|| || ||| ||||| | ||||| || |||||| || || || || |
Sbjct 428 TGTAAC---ACGTAATTTGAACAAAATCATAGACATCAATTACTACCCGCTGCCGGAGGC 372
Query 8534 CGCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACG 8593
| |||| || || ||||| || | ||| | || | || || ||||| | || || |
Sbjct 371 CAAGCGT-TCAAATATGCGTCATCGTCCCATAGGTATTGGAGTACAAGGATTCGCAGATG 313
Query 8594 CGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAA 8653
| || | |||| || || ||||| | ||||| | ||| || | |||
Sbjct 312 CATTGATACTCATGCGTTATCCATATGAAAGTGAGGAAGCATTTAAGCTAAATCAACAAA 253
Query 8654 TAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGAA-TTG 8712
|| |||||| | ||||| || || || |||||||||||| | ||| | ||||| ||
Sbjct 252 TATTTGAAACGATTTATTATGGTGCCTTGGAAGCCAGCTGT-GAGTTGGCTGAGAAGCTG 194
Query 8713 GGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATG 8772
|| | || ||| | || |||||| |||| |||| ||||| || || || || |||
Sbjct 193 GGTCCCTATGAAACTTATGCGGGCTCACCTGTCAGCAAGGGAATTTTACAGTATGATATG 134
Query 8773 TGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAA 8832
||| | || || || | | ||||||||| || |||| ||||||||| ||
Sbjct 133 TGGCAAAAAACACCTACTGATCTATGGAATTGGGCGGAGCTGAAGGAGAAAATTGCTAAA 74
Query 8833 TTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATA 8892
|| |||| ||||| || | | || ||||| || ||| | ||||| |||||
Sbjct 73 CATGGCGTGCGTAATTCTTTGCTCATTGCACCAATGCCTACAGCCTCCACTGCACAAATC 14
Query 8893 ATGGGAAACAA 8903
||||| || ||
Sbjct 13 ATGGGCAATAA 3
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505202248563480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |