Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_026928.1
Length=189418
Score E
Sequences producing significant alignments: (Bits) Value
seq4088 86.0 8e-12
seq2410 84.2 3e-11
seq9887 82.4 9e-11
>seq4088
Length=5036
Score = 86.0 bits (94), Expect = 8e-12
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 154265 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTTGGTTCGAGTCCA 154321
|||||||||||||||||||||| ||||||||||| || ||||| |||||||||||||
Sbjct 4255 TAGCTCAGTTGGATAGAGCAACCGCCTTCTAAGCGGTAGGTCGCTGGTTCGAGTCCA 4311
>seq2410
Length=3205
Score = 84.2 bits (92), Expect = 3e-11
Identities = 52/56 (93%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 154265 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTTGGTTCGAGTCC 154320
||||||||||||||||||||||||||||||||||||| |||| | ||||||| |||
Sbjct 880 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCATAGGTTCGAATCC 935
>seq9887
Length=3258
Score = 82.4 bits (90), Expect = 9e-11
Identities = 106/142 (75%), Gaps = 12/142 (8%)
Strand=Plus/Plus
Query 18766 TCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGGTTCAAGTCCCATCAATC 18825
||||||||||||| ||| ||||||||||||| || ||| |||||| |||||| || ||
Sbjct 2678 TCAGTTGGTTAGAACGCTTGCCTGTCACGCAAGAGATCGCGGGTTCGAGTCCCGTCTATT 2737
Query 18826 CCGTATGCCAAACTAGCTCAG-TGGTAGAGCAGGGCTTTTG--TAAAGCTCA---GGTCG 18879
| | || || |||||||| |||||||||| |||| | ||||||| ||||
Sbjct 2738 CTGCCAGCAAATATAGCTCAGTTGGTAGAGCA-----TTTGATTGAAGCTCAAAGTGTCG 2792
Query 18880 CAGGTTCAAATCCT-GTGTTTG 18900
|||||| | ||| ||||||
Sbjct 2793 TAGGTTCGATCCCTACTGTTTG 2814
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 605774400099120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |