Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq4088 86.0 8e-12 seq2410 84.2 3e-11 seq9887 82.4 9e-11 >seq4088 Length=5036 Score = 86.0 bits (94), Expect = 8e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 154265 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTTGGTTCGAGTCCA 154321 |||||||||||||||||||||| ||||||||||| || ||||| ||||||||||||| Sbjct 4255 TAGCTCAGTTGGATAGAGCAACCGCCTTCTAAGCGGTAGGTCGCTGGTTCGAGTCCA 4311 >seq2410 Length=3205 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 154265 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTTGGTTCGAGTCC 154320 ||||||||||||||||||||||||||||||||||||| |||| | ||||||| ||| Sbjct 880 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCATAGGTTCGAATCC 935 >seq9887 Length=3258 Score = 82.4 bits (90), Expect = 9e-11 Identities = 106/142 (75%), Gaps = 12/142 (8%) Strand=Plus/Plus Query 18766 TCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGGTTCAAGTCCCATCAATC 18825 ||||||||||||| ||| ||||||||||||| || ||| |||||| |||||| || || Sbjct 2678 TCAGTTGGTTAGAACGCTTGCCTGTCACGCAAGAGATCGCGGGTTCGAGTCCCGTCTATT 2737 Query 18826 CCGTATGCCAAACTAGCTCAG-TGGTAGAGCAGGGCTTTTG--TAAAGCTCA---GGTCG 18879 | | || || |||||||| |||||||||| |||| | ||||||| |||| Sbjct 2738 CTGCCAGCAAATATAGCTCAGTTGGTAGAGCA-----TTTGATTGAAGCTCAAAGTGTCG 2792 Query 18880 CAGGTTCAAATCCT-GTGTTTG 18900 |||||| | ||| |||||| Sbjct 2793 TAGGTTCGATCCCTACTGTTTG 2814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605774400099120