Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_027331.1 Length=170341 Score E Sequences producing significant alignments: (Bits) Value seq2789 170 2e-37 >seq2789 Length=15484 Score = 170 bits (188), Expect = 2e-37 Identities = 773/1199 (64%), Gaps = 70/1199 (6%) Strand=Plus/Plus Query 39042 CTTCATGAATTCCGATGTACCCTAATGAAATTGAAGAACGACCGTTTCGGAAGATATCAA 39101 |||||| ||||| || || |||||||||||||| | | || ||| || || |||| Sbjct 2734 CTTCATTTATTCCTATATAGCCTAATGAAATTGATGCTCTTCCATTTTTAAAAATTTCAA 2793 Query 39102 TAATCTCATCGTTTGGCTTAAGACGAACACCGAAAGCGCCTTCTTGATAAAGAATAGGAG 39161 |||| ||||| | ||| ||||| | | ||| |||| ||||| ||| | || || | Sbjct 2794 TAATATCATCTTCTGGATTAAGTCTTATTCCGCAAGCACCTTCAGTATACAATATGGGGG 2853 Query 39162 CAACCGAAGCTGTTACACCACGAAGTGATTCGATACGAGCTAAAAGAGCTTCTTTACAAA 39221 ||||| |||| ||||||| || ||| || | | | | | || |||| || Sbjct 2854 CAACCTTAGCTTTTACACCTTTGAGCCTTTCAATTCTTGTCATTAATGATTTTTTAGCAA 2913 Query 39222 TAAGTAAACGATCATCAAGAATATGAAAG-AATTTAGTTAAATCTGGACGGCCATCAACC 39280 || ||| | | || | |||| ||| || || | ||| | ||| || || Sbjct 2914 TATTTAATCTTTTTTCTA--ATATAAAATTAAATTTTTCAAAATTA-----CCA-CATCC 2965 Query 39281 ATACAATCAAGTGCTACTCGTGGAAGGTTAATAGTCACTACACCGAGATTATTGCGTCCA 39340 | | |||| ||||| || |||| || | | | || ||||| | |||||| | |||| Sbjct 2966 -TGCT-TCAATTGCTATTCTGGGAATATTTAAACTAACCACACCTAAATTATTTCTTCCA 3023 Query 39341 TCTAGAATT-TCTT--CGTTGTACTTGTTCTTCCATACACTAAGAAATGAA----CGGCA 39393 || |||| | || | || || ||||| ||| || ||||| ||| | ||| Sbjct 3024 TCGTGAATACTATTACCATT----TTCATCTTC-ATAAAC--AGAAAGGAAGCTTCTGCA 3076 Query 39394 TCCCATCGGAGAAACTGGAACAGAAGAGCCAGTAATCAGACGGTTATTCTTTGAACTAAT 39453 ||||| || | || || || ||||| || | | || || | | Sbjct 3077 CCCCATTGGCGT--CTTAAAG----GAACCAGTTGTCCTAACAACTTGCTCATAATTTAA 3130 Query 39454 AATGTCTGGATACATTCTCTTACTTGCGCATTCTAACGCAAGCTGTTTGATATCATAGTT 39513 ||| || |||||||||| | ||| ||||| | ||| || ||||| |||||||| || Sbjct 3131 AATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATT 3190 Query 39514 GACGTCAGTAGGATGAAGGTTAATT---CCTTCCTCAA---CAAACATAACAAGTTTAGG 39567 || || | || || || ||||| | | |||| ||||||||| || Sbjct 3191 AGGATCGCTA---TTAATTCTATTTGTCCCTTCTTTTATGGCAAA---AACAAGTTTTGG 3244 Query 39568 AAAGATTGGAGTGATTCCGTCTCGTCCAAGACCTTTAATTCTGTTGTTGAGAATAGCTTT 39627 ||| | || || || | | ||| | || || |||||||| | | || | ||| Sbjct 3245 AAATACTGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTT 3304 Query 39628 TTGAATCATCCGCTCGTATTCGTTTGTA---CCAGTACCAAATGTAATTGTTACAAACGG 39684 |||||| | | || | || ||||| ||| ||||| || || ||||| || Sbjct 3305 TTGAATTAATCTTTCCTCTT---TTGTAATTCCAAGTCCAAAACCAAAAGTAACAAATGG 3361 Query 39685 TGTTTGGCCATTTGAGCTGAACAGAGTATTGACTTCATATTCATAAGCCTGGAAC-GCGT 39743 ||||| ||||||| | | || |||||| | ||||||||| ||| ||| ||| || | Sbjct 3362 GGTTTGTCCATTTGCGGTATGCAAAGTATTAATTTCATATTC-TAATCCTTGAAAAGCAT 3420 Query 39744 CGTATACGTCTTTTTCTGTTTTTTCAATTGCGTATACATAGTCATTAACCTGCTCAATTC 39803 | | |||||||| |||||||| | | ||| || ||| | | ||| Sbjct 3421 CAAAACATTCTTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGG--GAT--ATTA 3476 Query 39804 CGTATCTTTCTGCATC---ACGTAAATGC-TTAAAGAAAGTCTTCTCTACAAAAGGAGCA 39859 ||| |||||| || | ||| | || |||| | || ||| |||| || Sbjct 3477 --TATTTTTCTGTTTCTTTAATTAACTTTATTTCAGAAGCTTTT----ACATAAGGGGCT 3530 Query 39860 AGCACAATATCTACGTTTGCAAATGTAGTTCCGCCATATTGATGAGAAGCCACTTGAGCC 39919 | | |||||| | || || || ||||| ||||| |||| || ||||| || Sbjct 3531 AAAATAATATCGATATTGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCT 3590 Query 39920 GTAATTTGAGCCATAATAGCGGTTGCTACTCCAATTGACTTTGGAGTCTCAATTTGAGCA 39979 | |||||||| | ||||| |||||| ||||||||| |||||| ||||||| |||| Sbjct 3591 ATTATTTGAGCAGTTATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCA 3650 Query 39980 TTACCGAGTTTAAATCCGTTATTAAGCATTCCCTTCAAATCAACTAAACAGCAGTTAGTG 40039 || || | |||||| || | ||||||||| || ||||||||||| || ||| Sbjct 3651 TTTCCTATTTTAAAGCCACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAAC 3710 Query 40040 AATGGAAGAGCTGGAGAATAGTCTAAGTCATGAAAATGAATAAGCCCTTTATCATGAGCA 40099 | ||||| | ||| ||||| ||||| |||||| ||||||| ||||| |||||||| Sbjct 3711 ATTGGAAAAAATGGTGAATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGCG 3770 Query 40100 TTTAGAACAGTC----GGAGAGATAACTTGACGAGCAATATGTTTTGAAACAATCCCTGC 40155 | | || ||| ||| ||| | |||| |||||| |||| || || || Sbjct 3771 TCAACTAC-GTCTTTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGC 3829 Query 40156 CATCAGGTCTCGTTGAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTAAGTA 40214 | || |||| ||||||||||| |||| ||||||||||||||| || || |||| Sbjct 3830 TAACAAATCTCTTTGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTAGTA 3888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544751692970040