Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_027331.1
Length=170341
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 170 2e-37
>seq2789
Length=15484
Score = 170 bits (188), Expect = 2e-37
Identities = 773/1199 (64%), Gaps = 70/1199 (6%)
Strand=Plus/Plus
Query 39042 CTTCATGAATTCCGATGTACCCTAATGAAATTGAAGAACGACCGTTTCGGAAGATATCAA 39101
|||||| ||||| || || |||||||||||||| | | || ||| || || ||||
Sbjct 2734 CTTCATTTATTCCTATATAGCCTAATGAAATTGATGCTCTTCCATTTTTAAAAATTTCAA 2793
Query 39102 TAATCTCATCGTTTGGCTTAAGACGAACACCGAAAGCGCCTTCTTGATAAAGAATAGGAG 39161
|||| ||||| | ||| ||||| | | ||| |||| ||||| ||| | || || |
Sbjct 2794 TAATATCATCTTCTGGATTAAGTCTTATTCCGCAAGCACCTTCAGTATACAATATGGGGG 2853
Query 39162 CAACCGAAGCTGTTACACCACGAAGTGATTCGATACGAGCTAAAAGAGCTTCTTTACAAA 39221
||||| |||| ||||||| || ||| || | | | | | || |||| ||
Sbjct 2854 CAACCTTAGCTTTTACACCTTTGAGCCTTTCAATTCTTGTCATTAATGATTTTTTAGCAA 2913
Query 39222 TAAGTAAACGATCATCAAGAATATGAAAG-AATTTAGTTAAATCTGGACGGCCATCAACC 39280
|| ||| | | || | |||| ||| || || | ||| | ||| || ||
Sbjct 2914 TATTTAATCTTTTTTCTA--ATATAAAATTAAATTTTTCAAAATTA-----CCA-CATCC 2965
Query 39281 ATACAATCAAGTGCTACTCGTGGAAGGTTAATAGTCACTACACCGAGATTATTGCGTCCA 39340
| | |||| ||||| || |||| || | | | || ||||| | |||||| | ||||
Sbjct 2966 -TGCT-TCAATTGCTATTCTGGGAATATTTAAACTAACCACACCTAAATTATTTCTTCCA 3023
Query 39341 TCTAGAATT-TCTT--CGTTGTACTTGTTCTTCCATACACTAAGAAATGAA----CGGCA 39393
|| |||| | || | || || ||||| ||| || ||||| ||| | |||
Sbjct 3024 TCGTGAATACTATTACCATT----TTCATCTTC-ATAAAC--AGAAAGGAAGCTTCTGCA 3076
Query 39394 TCCCATCGGAGAAACTGGAACAGAAGAGCCAGTAATCAGACGGTTATTCTTTGAACTAAT 39453
||||| || | || || || ||||| || | | || || | |
Sbjct 3077 CCCCATTGGCGT--CTTAAAG----GAACCAGTTGTCCTAACAACTTGCTCATAATTTAA 3130
Query 39454 AATGTCTGGATACATTCTCTTACTTGCGCATTCTAACGCAAGCTGTTTGATATCATAGTT 39513
||| || |||||||||| | ||| ||||| | ||| || ||||| |||||||| ||
Sbjct 3131 AATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATT 3190
Query 39514 GACGTCAGTAGGATGAAGGTTAATT---CCTTCCTCAA---CAAACATAACAAGTTTAGG 39567
|| || | || || || ||||| | | |||| ||||||||| ||
Sbjct 3191 AGGATCGCTA---TTAATTCTATTTGTCCCTTCTTTTATGGCAAA---AACAAGTTTTGG 3244
Query 39568 AAAGATTGGAGTGATTCCGTCTCGTCCAAGACCTTTAATTCTGTTGTTGAGAATAGCTTT 39627
||| | || || || | | ||| | || || |||||||| | | || | |||
Sbjct 3245 AAATACTGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTT 3304
Query 39628 TTGAATCATCCGCTCGTATTCGTTTGTA---CCAGTACCAAATGTAATTGTTACAAACGG 39684
|||||| | | || | || ||||| ||| ||||| || || ||||| ||
Sbjct 3305 TTGAATTAATCTTTCCTCTT---TTGTAATTCCAAGTCCAAAACCAAAAGTAACAAATGG 3361
Query 39685 TGTTTGGCCATTTGAGCTGAACAGAGTATTGACTTCATATTCATAAGCCTGGAAC-GCGT 39743
||||| ||||||| | | || |||||| | ||||||||| ||| ||| ||| || |
Sbjct 3362 GGTTTGTCCATTTGCGGTATGCAAAGTATTAATTTCATATTC-TAATCCTTGAAAAGCAT 3420
Query 39744 CGTATACGTCTTTTTCTGTTTTTTCAATTGCGTATACATAGTCATTAACCTGCTCAATTC 39803
| | |||||||| |||||||| | | ||| || ||| | | |||
Sbjct 3421 CAAAACATTCTTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGG--GAT--ATTA 3476
Query 39804 CGTATCTTTCTGCATC---ACGTAAATGC-TTAAAGAAAGTCTTCTCTACAAAAGGAGCA 39859
||| |||||| || | ||| | || |||| | || ||| |||| ||
Sbjct 3477 --TATTTTTCTGTTTCTTTAATTAACTTTATTTCAGAAGCTTTT----ACATAAGGGGCT 3530
Query 39860 AGCACAATATCTACGTTTGCAAATGTAGTTCCGCCATATTGATGAGAAGCCACTTGAGCC 39919
| | |||||| | || || || ||||| ||||| |||| || ||||| ||
Sbjct 3531 AAAATAATATCGATATTGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCT 3590
Query 39920 GTAATTTGAGCCATAATAGCGGTTGCTACTCCAATTGACTTTGGAGTCTCAATTTGAGCA 39979
| |||||||| | ||||| |||||| ||||||||| |||||| ||||||| ||||
Sbjct 3591 ATTATTTGAGCAGTTATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCA 3650
Query 39980 TTACCGAGTTTAAATCCGTTATTAAGCATTCCCTTCAAATCAACTAAACAGCAGTTAGTG 40039
|| || | |||||| || | ||||||||| || ||||||||||| || |||
Sbjct 3651 TTTCCTATTTTAAAGCCACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAAC 3710
Query 40040 AATGGAAGAGCTGGAGAATAGTCTAAGTCATGAAAATGAATAAGCCCTTTATCATGAGCA 40099
| ||||| | ||| ||||| ||||| |||||| ||||||| ||||| ||||||||
Sbjct 3711 ATTGGAAAAAATGGTGAATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGCG 3770
Query 40100 TTTAGAACAGTC----GGAGAGATAACTTGACGAGCAATATGTTTTGAAACAATCCCTGC 40155
| | || ||| ||| ||| | |||| |||||| |||| || || ||
Sbjct 3771 TCAACTAC-GTCTTTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGC 3829
Query 40156 CATCAGGTCTCGTTGAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTAAGTA 40214
| || |||| ||||||||||| |||| ||||||||||||||| || || ||||
Sbjct 3830 TAACAAATCTCTTTGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTAGTA 3888
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 544751692970040
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