Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_027344.1 Length=158099 Score E Sequences producing significant alignments: (Bits) Value seq2789 232 7e-56 seq1262 123 3e-23 seq2410 113 5e-20 >seq2789 Length=15484 Score = 232 bits (256), Expect = 7e-56 Identities = 692/1056 (66%), Gaps = 35/1056 (3%) Strand=Plus/Plus Query 79532 ATTCCGATATATCCAAGTGAAATAGAACTTCTACCATTTTTAAACAACTCAATGATTTCA 79591 ||||| ||||| || | |||||| || ||| ||||||||||| | ||||| || ||| Sbjct 2742 ATTCCTATATAGCCTAATGAAATTGATGCTCTTCCATTTTTAAAAATTTCAATAATATCA 2801 Query 79592 TCATCCGGTTTCATTCGAACGCCAAAAGCTCCTTCTTGATACAGAATCGGAGCCACCGAA 79651 || || || || | || | || |||| ||||| ||||| || || || ||| | Sbjct 2802 TCTTCTGGATTAAGTCTTATTCCGCAAGCACCTTCAGTATACAATATGGGGGCAACCTTA 2861 Query 79652 GCTTTTACGCCTTTCAGTGATTCGATACGAAGCATCAGCGAGTCTTTACAGATCTTCATT 79711 |||||||| ||||| || ||| || | ||| | || | |||| || || | | Sbjct 2862 GCTTTTACACCTTTGAGCCTTTCAATTCTTGTCATTAATGATTTTTTAGCAATATTTAAT 2921 Query 79712 CGGCAGTCTAGTAGATGCATGAACATGTTTAAATCTGTTTTGCCATTGACCTGAGAATCC 79771 | |||| || | || || | || ||| || ||| |||| || Sbjct 2922 CTTTTTTCTAATATAAA-ATTAAATTTTTCAAAA-----TTACCACAT-CCTGCT--TCA 2972 Query 79772 AAAGCTATACGAGGAAGATTTAATGTAACAACACCTAGATTATTGCGTCCATCAAGAATA 79831 | ||||| | |||| |||||| |||| ||||||| |||||| | |||||| ||||| Sbjct 2973 ATTGCTATTCTGGGAATATTTAAACTAACCACACCTAAATTATTTCTTCCATCGTGAATA 3032 Query 79832 AATTTACCATCGGAATTTTTCCATGCGCTCAAA--AAGCTTCTACACCCCATTGGAGA-- 79887 ||||||| || || ||| | ||| |||||||| ||||||||||| | Sbjct 3033 CTATTACCATTTTCATCTT--CATAAACAGAAAGGAAGCTTCTGCACCCCATTGGCGTCT 3090 Query 79888 TACAGGAATAGGAGAACCAGTAATCTTACGATTATTCTTGGCGCTAAT----AATATCGG 79943 || ||||| ||||| || || | |||| |||| |||||| | Sbjct 3091 TAAAGGAA--------CCAGTTGTCCTAACAA----CTTGCTCATAATTTAAAATATCAG 3138 Query 79944 GATACATTCGCTTAGAAGCGCATTCTAAAGCTAGTTGTTTGATATCATAATTTGGGTCTT 80003 |||||||||| | | | ||||| | || |||||||| ||||||||||| || || Sbjct 3139 GATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATTAGGATCGC 3198 Query 80004 CACTGCGAAGATTTAAACCTTCTTCAACGAACATAACCAATTTAGGAAAAATTGGAGTAA 80063 | | |||| ||||||| | | | ||| | ||| ||||| | || || Sbjct 3199 TATTAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAATACTGCCGTTT 3258 Query 80064 TTCCATGACGACCTAATCCCCGAATACGATTTTTAAGAATAGCTTGTTGAATTAGTTTTT 80123 || || ||||| || || | ||| | | || | || |||||||| | ||| Sbjct 3259 TTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGAATTAATCTTT 3318 Query 80124 CTTCCCAAGATGTCCCCATACCAAATGTAATGGTAACGAAAGGTGTTTGGCCGTTAGAAC 80183 | || | | || | ||||| || ||||| || || ||||| || || | Sbjct 3319 CCTCTTTTGTAATTCCAAGTCCAAAACCAAAAGTAACAAATGGGGTTTGTCCATTTGCGG 3378 Query 80184 TGAAAAGAGTATTAACTTCATATTCATATCCTTGAAAAGCATCGAATACAT-CTTTTTCT 80242 | | |||||||| ||||||||| |||||||||||||||| || |||| ||||||| Sbjct 3379 TATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAA-ACATTCTTTTTCA 3437 Query 80243 GTTTTTTCTTGAGCGTATAATTCAGCTTCTGGAATATGATATCGGCGAGCGTCTTCGAT- 80301 ||||||| | | | ||| || | | || |||| |||| | |||| || Sbjct 3438 ATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTGTTTCTTTAATT 3497 Query 80302 ATGTTTGTTGAAAGTTGCTTCTACATAAGGAGCTAGTACTTGGTCGACATTAGCAAATGT 80361 | ||| || | | |||| ||||||||| |||| | |||| ||| || || Sbjct 3498 AACTTTATTTCA-GAAGCTTTTACATAAGGGGCTAAAATAATATCGATATTGTTAATCGT 3556 Query 80362 AGTTCCACCATATTGATGAGAAGCTACTTGAGCTGTAATTTGAGCCATTACGGCAGTTGC 80421 ||||||||||| |||| || ||||| ||| | |||||||| ||| || ||||| Sbjct 3557 TGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAGTTATAGCCGTTGC 3616 Query 80422 TACACCAATTGAATTTGATGTTTCAATTTCAGCATTACCGAGTTTAAACCCATTTTGAAG 80481 | ||||||||| || ||||||||||||||||| || | |||||| ||| || ||| Sbjct 3617 TGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAAAGCCACCTTCAAG 3676 Query 80482 CATTCCGGCTAAATCTACTAAGCAACAGTTAGTAAACGGAAGCGATGGTGAATAATCCAT 80541 |||||| |||||| ||||| ||| ||| | |||| ||||||||||||| | Sbjct 3677 CATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAATGGTGAATAATCTAA 3736 Query 80542 GTCATGAAAATGGATAATTCCTTTATCATGAGCATC 80577 |||||| |||| || ||||| |||||||| || Sbjct 3737 ATCATGATAATGAATTTCACCTTTTTCATGAGCGTC 3772 >seq1262 Length=72559 Score = 123 bits (136), Expect = 3e-23 Identities = 78/83 (94%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 103767 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAAC 103826 ||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||| Sbjct 63817 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAAC 63876 Query 103827 C-ACTGAGCTAAGGGGCCGTAAT 103848 | ||||||||||||||||||||| Sbjct 63877 CAACTGAGCTAAGGGGCCGTAAT 63899 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 103776 CCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC-ACTGAGC 103834 |||||||||||||||||||||||| | ||||||||||||| |||||||||| ||||||| Sbjct 64411 CCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAACCAACTGAGC 64470 Query 103835 TAAGGGGCCGTAATT 103849 ||||| ||| | ||| Sbjct 64471 TAAGGAGCCTTTATT 64485 >seq2410 Length=3205 Score = 113 bits (124), Expect = 5e-20 Identities = 72/77 (94%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 103767 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAAC 103826 ||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||| Sbjct 1027 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTGCTCTAAC 968 Query 103827 C-ACTGAGCTAAGGGGC 103842 | ||||||||||||||| Sbjct 967 CAACTGAGCTAAGGGGC 951 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 103768 TGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 103827 ||||| | |||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct 2378 TGGTGCCTCCTGCTGGACTTGAACCAGCGACCTGACGATTATGAGTCGTATGCTCTAACC 2319 Query 103828 -ACTGAGCTAAGGGG 103841 |||||||||||||| Sbjct 2318 AACTGAGCTAAGGGG 2304 Score = 95.1 bits (104), Expect = 1e-14 Identities = 62/67 (93%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 103776 CCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC-ACTGAGC 103834 |||||||||||||||||||||||| | ||||||||||||| |||||||||| ||||||| Sbjct 1849 CCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAACCAACTGAGC 1790 Query 103835 TAAGGGG 103841 ||||||| Sbjct 1789 TAAGGGG 1783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505592497044360