Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_027344.1
Length=158099
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 232 7e-56
seq1262 123 3e-23
seq2410 113 5e-20
>seq2789
Length=15484
Score = 232 bits (256), Expect = 7e-56
Identities = 692/1056 (66%), Gaps = 35/1056 (3%)
Strand=Plus/Plus
Query 79532 ATTCCGATATATCCAAGTGAAATAGAACTTCTACCATTTTTAAACAACTCAATGATTTCA 79591
||||| ||||| || | |||||| || ||| ||||||||||| | ||||| || |||
Sbjct 2742 ATTCCTATATAGCCTAATGAAATTGATGCTCTTCCATTTTTAAAAATTTCAATAATATCA 2801
Query 79592 TCATCCGGTTTCATTCGAACGCCAAAAGCTCCTTCTTGATACAGAATCGGAGCCACCGAA 79651
|| || || || | || | || |||| ||||| ||||| || || || ||| |
Sbjct 2802 TCTTCTGGATTAAGTCTTATTCCGCAAGCACCTTCAGTATACAATATGGGGGCAACCTTA 2861
Query 79652 GCTTTTACGCCTTTCAGTGATTCGATACGAAGCATCAGCGAGTCTTTACAGATCTTCATT 79711
|||||||| ||||| || ||| || | ||| | || | |||| || || | |
Sbjct 2862 GCTTTTACACCTTTGAGCCTTTCAATTCTTGTCATTAATGATTTTTTAGCAATATTTAAT 2921
Query 79712 CGGCAGTCTAGTAGATGCATGAACATGTTTAAATCTGTTTTGCCATTGACCTGAGAATCC 79771
| |||| || | || || | || ||| || ||| |||| ||
Sbjct 2922 CTTTTTTCTAATATAAA-ATTAAATTTTTCAAAA-----TTACCACAT-CCTGCT--TCA 2972
Query 79772 AAAGCTATACGAGGAAGATTTAATGTAACAACACCTAGATTATTGCGTCCATCAAGAATA 79831
| ||||| | |||| |||||| |||| ||||||| |||||| | |||||| |||||
Sbjct 2973 ATTGCTATTCTGGGAATATTTAAACTAACCACACCTAAATTATTTCTTCCATCGTGAATA 3032
Query 79832 AATTTACCATCGGAATTTTTCCATGCGCTCAAA--AAGCTTCTACACCCCATTGGAGA-- 79887
||||||| || || ||| | ||| |||||||| ||||||||||| |
Sbjct 3033 CTATTACCATTTTCATCTT--CATAAACAGAAAGGAAGCTTCTGCACCCCATTGGCGTCT 3090
Query 79888 TACAGGAATAGGAGAACCAGTAATCTTACGATTATTCTTGGCGCTAAT----AATATCGG 79943
|| ||||| ||||| || || | |||| |||| |||||| |
Sbjct 3091 TAAAGGAA--------CCAGTTGTCCTAACAA----CTTGCTCATAATTTAAAATATCAG 3138
Query 79944 GATACATTCGCTTAGAAGCGCATTCTAAAGCTAGTTGTTTGATATCATAATTTGGGTCTT 80003
|||||||||| | | | ||||| | || |||||||| ||||||||||| || ||
Sbjct 3139 GATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATTAGGATCGC 3198
Query 80004 CACTGCGAAGATTTAAACCTTCTTCAACGAACATAACCAATTTAGGAAAAATTGGAGTAA 80063
| | |||| ||||||| | | | ||| | ||| ||||| | || ||
Sbjct 3199 TATTAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAATACTGCCGTTT 3258
Query 80064 TTCCATGACGACCTAATCCCCGAATACGATTTTTAAGAATAGCTTGTTGAATTAGTTTTT 80123
|| || ||||| || || | ||| | | || | || |||||||| | |||
Sbjct 3259 TTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGAATTAATCTTT 3318
Query 80124 CTTCCCAAGATGTCCCCATACCAAATGTAATGGTAACGAAAGGTGTTTGGCCGTTAGAAC 80183
| || | | || | ||||| || ||||| || || ||||| || || |
Sbjct 3319 CCTCTTTTGTAATTCCAAGTCCAAAACCAAAAGTAACAAATGGGGTTTGTCCATTTGCGG 3378
Query 80184 TGAAAAGAGTATTAACTTCATATTCATATCCTTGAAAAGCATCGAATACAT-CTTTTTCT 80242
| | |||||||| ||||||||| |||||||||||||||| || |||| |||||||
Sbjct 3379 TATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAA-ACATTCTTTTTCA 3437
Query 80243 GTTTTTTCTTGAGCGTATAATTCAGCTTCTGGAATATGATATCGGCGAGCGTCTTCGAT- 80301
||||||| | | | ||| || | | || |||| |||| | |||| ||
Sbjct 3438 ATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTGTTTCTTTAATT 3497
Query 80302 ATGTTTGTTGAAAGTTGCTTCTACATAAGGAGCTAGTACTTGGTCGACATTAGCAAATGT 80361
| ||| || | | |||| ||||||||| |||| | |||| ||| || ||
Sbjct 3498 AACTTTATTTCA-GAAGCTTTTACATAAGGGGCTAAAATAATATCGATATTGTTAATCGT 3556
Query 80362 AGTTCCACCATATTGATGAGAAGCTACTTGAGCTGTAATTTGAGCCATTACGGCAGTTGC 80421
||||||||||| |||| || ||||| ||| | |||||||| ||| || |||||
Sbjct 3557 TGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAGTTATAGCCGTTGC 3616
Query 80422 TACACCAATTGAATTTGATGTTTCAATTTCAGCATTACCGAGTTTAAACCCATTTTGAAG 80481
| ||||||||| || ||||||||||||||||| || | |||||| ||| || |||
Sbjct 3617 TGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAAAGCCACCTTCAAG 3676
Query 80482 CATTCCGGCTAAATCTACTAAGCAACAGTTAGTAAACGGAAGCGATGGTGAATAATCCAT 80541
|||||| |||||| ||||| ||| ||| | |||| ||||||||||||| |
Sbjct 3677 CATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAATGGTGAATAATCTAA 3736
Query 80542 GTCATGAAAATGGATAATTCCTTTATCATGAGCATC 80577
|||||| |||| || ||||| |||||||| ||
Sbjct 3737 ATCATGATAATGAATTTCACCTTTTTCATGAGCGTC 3772
>seq1262
Length=72559
Score = 123 bits (136), Expect = 3e-23
Identities = 78/83 (94%), Gaps = 1/83 (1%)
Strand=Plus/Plus
Query 103767 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAAC 103826
||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||
Sbjct 63817 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAAC 63876
Query 103827 C-ACTGAGCTAAGGGGCCGTAAT 103848
| |||||||||||||||||||||
Sbjct 63877 CAACTGAGCTAAGGGGCCGTAAT 63899
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 103776 CCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC-ACTGAGC 103834
|||||||||||||||||||||||| | ||||||||||||| |||||||||| |||||||
Sbjct 64411 CCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAACCAACTGAGC 64470
Query 103835 TAAGGGGCCGTAATT 103849
||||| ||| | |||
Sbjct 64471 TAAGGAGCCTTTATT 64485
>seq2410
Length=3205
Score = 113 bits (124), Expect = 5e-20
Identities = 72/77 (94%), Gaps = 1/77 (1%)
Strand=Plus/Minus
Query 103767 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAAC 103826
||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||
Sbjct 1027 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTGCTCTAAC 968
Query 103827 C-ACTGAGCTAAGGGGC 103842
| |||||||||||||||
Sbjct 967 CAACTGAGCTAAGGGGC 951
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 103768 TGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 103827
||||| | |||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 2378 TGGTGCCTCCTGCTGGACTTGAACCAGCGACCTGACGATTATGAGTCGTATGCTCTAACC 2319
Query 103828 -ACTGAGCTAAGGGG 103841
||||||||||||||
Sbjct 2318 AACTGAGCTAAGGGG 2304
Score = 95.1 bits (104), Expect = 1e-14
Identities = 62/67 (93%), Gaps = 1/67 (1%)
Strand=Plus/Minus
Query 103776 CCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC-ACTGAGC 103834
|||||||||||||||||||||||| | ||||||||||||| |||||||||| |||||||
Sbjct 1849 CCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAACCAACTGAGC 1790
Query 103835 TAAGGGG 103841
|||||||
Sbjct 1789 TAAGGGG 1783
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505592497044360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |