Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_027351.1 Length=147745 Score E Sequences producing significant alignments: (Bits) Value seq6803 100 3e-16 seq27881 93.3 4e-14 >seq6803 Length=1108 Score = 100 bits (110), Expect = 3e-16 Identities = 78/92 (85%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 977 GTGTGGTGGAAATGGAGATACACAGGAGACTTAAAATCTCCCG-CTTAAATGATTACGAG 1035 |||||||||||||||| |||||||||||||||||||||||||| | || ||||| ||| Sbjct 211 GTGTGGTGGAAATGGAAATACACAGGAGACTTAAAATCTCCCGCCCTAGTGGATTATGAG 152 Query 1036 TTCGAGTCTCGTCACCTGCACCAGAATTAACG 1067 |||||||||| | || | |||| |||| ||| Sbjct 151 TTCGAGTCTCATTACTGGTACCAAAATTTACG 120 >seq27881 Length=1164 Score = 93.3 bits (102), Expect = 4e-14 Identities = 73/86 (85%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 977 GTGTGGTGGAAATGGAGATACACAGGAGACTTAAAATCTCCCG-CTTAAATGATTACGAG 1035 |||||||||||||||| |||||||||||||||||||||||||| | || ||||| ||| Sbjct 702 GTGTGGTGGAAATGGAAATACACAGGAGACTTAAAATCTCCCGCCCTAGTGGATTATGAG 761 Query 1036 TTCGAGTCTCGTCACCTGCACCAGAA 1061 |||||||||| | || | |||| || Sbjct 762 TTCGAGTCTCATTACTGGTACCAAAA 787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472472556298200