Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_027353.1 Length=167063 Score E Sequences producing significant alignments: (Bits) Value seq2789 138 1e-27 >seq2789 Length=15484 Score = 138 bits (152), Expect = 1e-27 Identities = 501/766 (65%), Gaps = 25/766 (3%) Strand=Plus/Plus Query 42181 AATATCAGGATACATCCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTT 42240 ||||||||||||||| | || ||| ||| || || || || || || |||||||| || Sbjct 3131 AATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATT 3190 Query 42241 CGGATCGTCTTTGTAAAG--ATTAACACCTTCTTCAACGAACATAACAAGCTTAGGAAAA 42298 |||||| || | ||| ||| ||||||| | | | |||||| || ||||| Sbjct 3191 AGGATCG-CTAT-TAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAAT 3248 Query 42299 ATAGGAGTTATCCCATCACGACCGAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGA 42358 | | ||| | || || | || || || | ||| | | |||| ||| ||| Sbjct 3249 ACTGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGA 3308 Query 42359 ATCATTCGTTCAG-TCCAGTCAGTTCCTGTACCAAATGTAATTGTTACAAAAGGAGTTTG 42417 || | || ||| | || | | | || ||||| || || ||||| || ||||| Sbjct 3309 ATTAATCTTTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTTG 3367 Query 42418 TCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATAC 42477 ||| |||| || | |||||| | ||||||||| | |||| || ||||| | || Sbjct 3368 TCCATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAA-AC 3426 Query 42478 AT-CTTTTTCTGTTTTAGATTGGGCATAATTCAACGCATCGGCGATTTGCCATTTTTCTG 42536 || ||||||| |||| | |||| || | || || ||| | ||||||||| Sbjct 3427 ATTCTTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTG 3486 Query 42537 CATCCTTAATATGTTTTGCAT-AGGTGCGTTTAACATAAGGAG--AAAGTACTTTATCTA 42593 || ||||| ||| | || || |||| ||||||| | ||| || | ||| | Sbjct 3487 TTTCTTTAATTAACTTTATTTCAGAAGCTTTTA-CATAAGGGGCTAAAATAAT--ATCGA 3543 Query 42594 CATTCGCAAAAGTCGTTCCGCCGTATTGGTGAGAAGCAACCTGTGCAGTAATTTGTGCCA 42653 ||| || || ||||| || || ||| || || || || | ||||| || Sbjct 3544 TATTGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAG 3603 Query 42654 TAATTGCAGTAGCAACACCGATTGATTTAGGAGTTTCAATCTGTGCATTACCTAGCTTAA 42713 | || || || || || ||||| ||||||||||| | ||||| |||| |||| Sbjct 3604 TTATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAA 3663 Query 42714 ATCCATTCTCAAGCATTCCTTTTAAATCTACTAAACAGCAATTAGTAAATGGAAGAGCAG 42773 | ||| |||||||||||||||||||| ||||| |||||| | ||||| | | Sbjct 3664 AGCCACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAATG 3723 Query 42774 GGGAATAATCAATATCGTGGAAATGGATAATTCCGCTTTCATGCGCTTTCATAATAAAAG 42833 | |||||||| | ||| || |||| || || ||||||| || ||| | | | | Sbjct 3724 GTGAATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--ACG 3779 Query 42834 AC----GGGACCAT---ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTCC 42886 | || | || |||||| ||| |||||||| | |||||||| | | || Sbjct 3780 TCTTTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATCT 3839 Query 42887 CGTTGAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTA 42932 | ||||||||||| |||| ||||||||||||||| || |||| Sbjct 3840 CTTTGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534266164114920