Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_027353.1
Length=167063
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 138 1e-27
>seq2789
Length=15484
Score = 138 bits (152), Expect = 1e-27
Identities = 501/766 (65%), Gaps = 25/766 (3%)
Strand=Plus/Plus
Query 42181 AATATCAGGATACATCCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTT 42240
||||||||||||||| | || ||| ||| || || || || || || |||||||| ||
Sbjct 3131 AATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATT 3190
Query 42241 CGGATCGTCTTTGTAAAG--ATTAACACCTTCTTCAACGAACATAACAAGCTTAGGAAAA 42298
|||||| || | ||| ||| ||||||| | | | |||||| || |||||
Sbjct 3191 AGGATCG-CTAT-TAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAAT 3248
Query 42299 ATAGGAGTTATCCCATCACGACCGAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGA 42358
| | ||| | || || | || || || | ||| | | |||| ||| |||
Sbjct 3249 ACTGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGA 3308
Query 42359 ATCATTCGTTCAG-TCCAGTCAGTTCCTGTACCAAATGTAATTGTTACAAAAGGAGTTTG 42417
|| | || ||| | || | | | || ||||| || || ||||| || |||||
Sbjct 3309 ATTAATCTTTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTTG 3367
Query 42418 TCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATAC 42477
||| |||| || | |||||| | ||||||||| | |||| || ||||| | ||
Sbjct 3368 TCCATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAA-AC 3426
Query 42478 AT-CTTTTTCTGTTTTAGATTGGGCATAATTCAACGCATCGGCGATTTGCCATTTTTCTG 42536
|| ||||||| |||| | |||| || | || || ||| | |||||||||
Sbjct 3427 ATTCTTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTG 3486
Query 42537 CATCCTTAATATGTTTTGCAT-AGGTGCGTTTAACATAAGGAG--AAAGTACTTTATCTA 42593
|| ||||| ||| | || || |||| ||||||| | ||| || | ||| |
Sbjct 3487 TTTCTTTAATTAACTTTATTTCAGAAGCTTTTA-CATAAGGGGCTAAAATAAT--ATCGA 3543
Query 42594 CATTCGCAAAAGTCGTTCCGCCGTATTGGTGAGAAGCAACCTGTGCAGTAATTTGTGCCA 42653
||| || || ||||| || || ||| || || || || | ||||| ||
Sbjct 3544 TATTGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAG 3603
Query 42654 TAATTGCAGTAGCAACACCGATTGATTTAGGAGTTTCAATCTGTGCATTACCTAGCTTAA 42713
| || || || || || ||||| ||||||||||| | ||||| |||| ||||
Sbjct 3604 TTATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAA 3663
Query 42714 ATCCATTCTCAAGCATTCCTTTTAAATCTACTAAACAGCAATTAGTAAATGGAAGAGCAG 42773
| ||| |||||||||||||||||||| ||||| |||||| | ||||| | |
Sbjct 3664 AGCCACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAATG 3723
Query 42774 GGGAATAATCAATATCGTGGAAATGGATAATTCCGCTTTCATGCGCTTTCATAATAAAAG 42833
| |||||||| | ||| || |||| || || ||||||| || ||| | | | |
Sbjct 3724 GTGAATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--ACG 3779
Query 42834 AC----GGGACCAT---ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTCC 42886
| || | || |||||| ||| |||||||| | |||||||| | | ||
Sbjct 3780 TCTTTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATCT 3839
Query 42887 CGTTGAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTA 42932
| ||||||||||| |||| ||||||||||||||| || ||||
Sbjct 3840 CTTTGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 534266164114920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |