Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_027356.1 Length=108065 Score E Sequences producing significant alignments: (Bits) Value seq2789 116 3e-21 seq17421 89.7 4e-13 seq2698 84.2 2e-11 >seq2789 Length=15484 Score = 116 bits (128), Expect = 3e-21 Identities = 222/327 (68%), Gaps = 0/327 (0%) Strand=Plus/Minus Query 44589 TGAAAAAGAGTGTTATGATGCATTCCAAGCCCTAGAGTATGAAACTAATTCATTATTTAA 44648 ||||||||| |||| |||||| || |||| |||| ||||||| |||| | || || Sbjct 3437 TGAAAAAGAATGTTTTGATGCTTTTCAAGGATTAGAATATGAAATTAATACTTTGCATAC 3378 Query 44649 CTCTAACGGACAGACTCCTTTTGTTACGCTTGGCTTTGGGCTAGGACAGGGGTGGGAGGA 44708 | | || ||||| || || |||||||| |||| ||||| || ||| ||||| Sbjct 3377 CGCAAATGGACAAACCCCATTTGTTACTTTTGGTTTTGGACTTGGAATTACAAAAGAGGA 3318 Query 44709 AAGGATGATTCAGAAAGCCATCCTCCAAAACCGTATTAAAGGTTTAGGTGCTGCTGAGTC 44768 ||| | ||||| ||| | || | |||| | || || || ||||| | | Sbjct 3317 AAGATTAATTCAAAAATCAATATTAAGAAACAGAATAAATGGGTTAGGAAAAAATAAAAA 3258 Query 44769 AACCCCTATCTTCCCTAAACTAGTATTCTCAGTTAAAGAAGGATTAAATAAAAATCCAGG 44828 ||| | | || || ||||| || || | | |||||||| ||||| || | | Sbjct 3257 AACGGCAGTATTTCCAAAACTTGTTTTTGCCATAAAAGAAGGGACAAATAGAATTAATAG 3198 Query 44829 CGATCCTAACTACGATATAAAACAGCTAGCACTTGAGTGTTCTGCTACCCGTATGTACCC 44888 ||||||||| || ||||||||||| || || ||||| ||||| | || ||||| || Sbjct 3197 CGATCCTAATTATGATATAAAACAACTGGCGCTTGAATGTTCAACACAACGAATGTATCC 3138 Query 44889 GGACTATTTAAGTTACGAGAAAGTTGT 44915 || ||||| ||| ||| ||||||| Sbjct 3137 TGATATTTTAAATTATGAGCAAGTTGT 3111 >seq17421 Length=2767 Score = 89.7 bits (98), Expect = 4e-13 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 26868 CCTCGCTGGGATTCGAACCCATTAAAACAGCTCAACCGAGATAGTAGGTTTAATTTACTC 26927 ||| |||||||||||||||||||||||||||| |||||||||| || |||||||| | || Sbjct 1410 CCTTGCTGGGATTCGAACCCATTAAAACAGCTTAACCGAGATACTAAGTTTAATTAAATC 1469 Query 26928 TGAC 26931 |||| Sbjct 1470 TGAC 1473 >seq2698 Length=11445 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 24603 TAATAACATCGTTCTGCTGTTCACGCGTCAGTGCGTTAAAACGTACAGCGTACCCTGAAA 24662 |||||||||| | || |||||| | || | | |||||| | ||||| || ||||||| Sbjct 5480 TAATAACATCTTGTTGTTGTTCAGGTGTTAAAGAGTTAAATCTAACAGCATATCCTGAAA 5421 Query 24663 CACGGATAGTTAATTGAGGGTATTTTTCAGGATGTTTCTGTGCATCCAAAAGCTGATCAC 24722 | | || ||||| || ||||||||||||||||||| |||||| | ||| || Sbjct 5420 CCCTAATTGTTAACTGCGGGTATTTTTCAGGATGTTCTACTGCATCAAGAAGTGTTTCTT 5361 Query 24723 GACTTAACACATTGACATTTAGGTGTTGACCCCCTTCAA 24761 | | || || ||||||| ||||| || ||||||| Sbjct 5360 TTCGAAGAACGTTTACATTTAAATGTTGTCCACCTTCAA 5322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345552390128314