Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_027356.1
Length=108065
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 116 3e-21
seq17421 89.7 4e-13
seq2698 84.2 2e-11
>seq2789
Length=15484
Score = 116 bits (128), Expect = 3e-21
Identities = 222/327 (68%), Gaps = 0/327 (0%)
Strand=Plus/Minus
Query 44589 TGAAAAAGAGTGTTATGATGCATTCCAAGCCCTAGAGTATGAAACTAATTCATTATTTAA 44648
||||||||| |||| |||||| || |||| |||| ||||||| |||| | || ||
Sbjct 3437 TGAAAAAGAATGTTTTGATGCTTTTCAAGGATTAGAATATGAAATTAATACTTTGCATAC 3378
Query 44649 CTCTAACGGACAGACTCCTTTTGTTACGCTTGGCTTTGGGCTAGGACAGGGGTGGGAGGA 44708
| | || ||||| || || |||||||| |||| ||||| || ||| |||||
Sbjct 3377 CGCAAATGGACAAACCCCATTTGTTACTTTTGGTTTTGGACTTGGAATTACAAAAGAGGA 3318
Query 44709 AAGGATGATTCAGAAAGCCATCCTCCAAAACCGTATTAAAGGTTTAGGTGCTGCTGAGTC 44768
||| | ||||| ||| | || | |||| | || || || ||||| | |
Sbjct 3317 AAGATTAATTCAAAAATCAATATTAAGAAACAGAATAAATGGGTTAGGAAAAAATAAAAA 3258
Query 44769 AACCCCTATCTTCCCTAAACTAGTATTCTCAGTTAAAGAAGGATTAAATAAAAATCCAGG 44828
||| | | || || ||||| || || | | |||||||| ||||| || | |
Sbjct 3257 AACGGCAGTATTTCCAAAACTTGTTTTTGCCATAAAAGAAGGGACAAATAGAATTAATAG 3198
Query 44829 CGATCCTAACTACGATATAAAACAGCTAGCACTTGAGTGTTCTGCTACCCGTATGTACCC 44888
||||||||| || ||||||||||| || || ||||| ||||| | || ||||| ||
Sbjct 3197 CGATCCTAATTATGATATAAAACAACTGGCGCTTGAATGTTCAACACAACGAATGTATCC 3138
Query 44889 GGACTATTTAAGTTACGAGAAAGTTGT 44915
|| ||||| ||| ||| |||||||
Sbjct 3137 TGATATTTTAAATTATGAGCAAGTTGT 3111
>seq17421
Length=2767
Score = 89.7 bits (98), Expect = 4e-13
Identities = 58/64 (91%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 26868 CCTCGCTGGGATTCGAACCCATTAAAACAGCTCAACCGAGATAGTAGGTTTAATTTACTC 26927
||| |||||||||||||||||||||||||||| |||||||||| || |||||||| | ||
Sbjct 1410 CCTTGCTGGGATTCGAACCCATTAAAACAGCTTAACCGAGATACTAAGTTTAATTAAATC 1469
Query 26928 TGAC 26931
||||
Sbjct 1470 TGAC 1473
>seq2698
Length=11445
Score = 84.2 bits (92), Expect = 2e-11
Identities = 114/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 24603 TAATAACATCGTTCTGCTGTTCACGCGTCAGTGCGTTAAAACGTACAGCGTACCCTGAAA 24662
|||||||||| | || |||||| | || | | |||||| | ||||| || |||||||
Sbjct 5480 TAATAACATCTTGTTGTTGTTCAGGTGTTAAAGAGTTAAATCTAACAGCATATCCTGAAA 5421
Query 24663 CACGGATAGTTAATTGAGGGTATTTTTCAGGATGTTTCTGTGCATCCAAAAGCTGATCAC 24722
| | || ||||| || ||||||||||||||||||| |||||| | ||| ||
Sbjct 5420 CCCTAATTGTTAACTGCGGGTATTTTTCAGGATGTTCTACTGCATCAAGAAGTGTTTCTT 5361
Query 24723 GACTTAACACATTGACATTTAGGTGTTGACCCCCTTCAA 24761
| | || || ||||||| ||||| || |||||||
Sbjct 5360 TTCGAAGAACGTTTACATTTAAATGTTGTCCACCTTCAA 5322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 345552390128314
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |