Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_027364.1
Length=348113
Score E
Sequences producing significant alignments: (Bits) Value
seq17421 159 8e-34
seq18712 93.3 9e-14
>seq17421
Length=2767
Score = 159 bits (176), Expect = 8e-34
Identities = 154/198 (78%), Gaps = 10/198 (5%)
Strand=Plus/Plus
Query 209767 AAATAAAAG-TCCATCCGGTTTTCCAGTTTGGTGAAGGACTTTCACCTCTAGTTTCAACC 209825
||| |||| |||| ||||||||||||| |||||||||| | ||||||| |||||||| |
Sbjct 221 AAAGAAAATATCCACCCGGTTTTCCAGTATGGTGAAGGAATGTCACCTCAAGTTTCAAGC 280
Query 209826 TGCTAGTCAAGTAATAATTGCCTATCGTCCAATTATCAAACCCGTCTAGGTTAACATTCA 209885
|||| ||||| |||| |||| |||||||||| ||||| |||| | |||||| |||||
Sbjct 281 TGCTTGTCAACTAATGTTTGCTTATCGTCCAAACATCAATCCCGCCCAGGTTACAATTCA 340
Query 209886 CCACTTCCTAGAGTACCAGAGATCTTGTTCTGGTTAGCATCGACGTAACTTACACCATAT 209945
|||||||| | |||| | | || | ||| |||||| |||||||||||
Sbjct 341 CCACTTCCAGGGTTACCTTAAA---------GGATTTTATCAACGTAAATTACACCATAT 391
Query 209946 ACGTCTGATTGTGGAATT 209963
|||| |||||||||||||
Sbjct 392 ACGTTTGATTGTGGAATT 409
Score = 129 bits (142), Expect = 1e-24
Identities = 120/150 (80%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 209769 ATAA-AAGTCCATCCGGTTTTCCAGTTTGGTGAAGGACTTTCACCTCTAGTTTCAACCTG 209827
|||| || ||||||||||||||||||||||||||||| | ||||||| ||||| || |||
Sbjct 540 ATAATAATTCCATCCGGTTTTCCAGTTTGGTGAAGGAATGTCACCTCAAGTTTTAAGCTG 599
Query 209828 CTAGTCAAGTAATAATTGCCTATCGTCCAATTATCAAACCCGTCTAGGTTAACATTCACC 209887
|| ||||| |||| || ||||||||| || |||||||||| || || | ||| ||
Sbjct 600 CTTGTCAACTAATGTTTCCCTATCGTCAAAACATCAAACCCGCCTTAGTCTA-ATTTCCC 658
Query 209888 ACTTCCTAGAGTACCAGAGATCTTGTTCTG 209917
||| | || | ||||||||||||||||
Sbjct 659 ACTGCTAAGGTTTTCAGAGATCTTGTTCTG 688
>seq18712
Length=4002
Score = 93.3 bits (102), Expect = 9e-14
Identities = 143/200 (72%), Gaps = 8/200 (4%)
Strand=Plus/Plus
Query 6085 GGTAATTCACGAGGTTTTCTCTGTAGTTGTTCTTTTACTTGTTCAACGTGGTTTTTATAA 6144
||| | ||| |||| |||| || ||| ||| | |||| |||| || || | ||||
Sbjct 3127 GGTGAATCAAGAGGGGTTCTACTTAATTGCTCTAATGCTTGCTCAATATGATTATCATAA 3186
Query 6145 ATGTGGCAATCACCACCATTCCAAATAAATTCACCAACATCTAAACCCGTAATTTGT--- 6201
|| || ||||||||||| ||| || |||||||| || ||| ||| || || |
Sbjct 3187 ATATGACAATCACCACCTACCCATATGAATTCACCTACTCCTATACC---AAGTTCTGCG 3243
Query 6202 GCAATCATATGAGTTAGTAGTGAATA-ACTACTGATATTAAATGGAACTCCCAAAAATAG 6260
|| | ||||||||||| | |||||| | |||| ||||| || ||||| || || || |
Sbjct 3244 GCTAAAATATGAGTTAGCATTGAATAGAATACT-ATATTGAAAGGAACACCTAAGAACAT 3302
Query 6261 ATCAGCGGATCTTTGATGTA 6280
||| ||| |||||||| ||
Sbjct 3303 ATCTGCGCTTCTTTGATATA 3322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1113387301211352
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |