Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq17421 159 8e-34 seq18712 93.3 9e-14 >seq17421 Length=2767 Score = 159 bits (176), Expect = 8e-34 Identities = 154/198 (78%), Gaps = 10/198 (5%) Strand=Plus/Plus Query 209767 AAATAAAAG-TCCATCCGGTTTTCCAGTTTGGTGAAGGACTTTCACCTCTAGTTTCAACC 209825 ||| |||| |||| ||||||||||||| |||||||||| | ||||||| |||||||| | Sbjct 221 AAAGAAAATATCCACCCGGTTTTCCAGTATGGTGAAGGAATGTCACCTCAAGTTTCAAGC 280 Query 209826 TGCTAGTCAAGTAATAATTGCCTATCGTCCAATTATCAAACCCGTCTAGGTTAACATTCA 209885 |||| ||||| |||| |||| |||||||||| ||||| |||| | |||||| ||||| Sbjct 281 TGCTTGTCAACTAATGTTTGCTTATCGTCCAAACATCAATCCCGCCCAGGTTACAATTCA 340 Query 209886 CCACTTCCTAGAGTACCAGAGATCTTGTTCTGGTTAGCATCGACGTAACTTACACCATAT 209945 |||||||| | |||| | | || | ||| |||||| ||||||||||| Sbjct 341 CCACTTCCAGGGTTACCTTAAA---------GGATTTTATCAACGTAAATTACACCATAT 391 Query 209946 ACGTCTGATTGTGGAATT 209963 |||| ||||||||||||| Sbjct 392 ACGTTTGATTGTGGAATT 409 Score = 129 bits (142), Expect = 1e-24 Identities = 120/150 (80%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 209769 ATAA-AAGTCCATCCGGTTTTCCAGTTTGGTGAAGGACTTTCACCTCTAGTTTCAACCTG 209827 |||| || ||||||||||||||||||||||||||||| | ||||||| ||||| || ||| Sbjct 540 ATAATAATTCCATCCGGTTTTCCAGTTTGGTGAAGGAATGTCACCTCAAGTTTTAAGCTG 599 Query 209828 CTAGTCAAGTAATAATTGCCTATCGTCCAATTATCAAACCCGTCTAGGTTAACATTCACC 209887 || ||||| |||| || ||||||||| || |||||||||| || || | ||| || Sbjct 600 CTTGTCAACTAATGTTTCCCTATCGTCAAAACATCAAACCCGCCTTAGTCTA-ATTTCCC 658 Query 209888 ACTTCCTAGAGTACCAGAGATCTTGTTCTG 209917 ||| | || | |||||||||||||||| Sbjct 659 ACTGCTAAGGTTTTCAGAGATCTTGTTCTG 688 >seq18712 Length=4002 Score = 93.3 bits (102), Expect = 9e-14 Identities = 143/200 (72%), Gaps = 8/200 (4%) Strand=Plus/Plus Query 6085 GGTAATTCACGAGGTTTTCTCTGTAGTTGTTCTTTTACTTGTTCAACGTGGTTTTTATAA 6144 ||| | ||| |||| |||| || ||| ||| | |||| |||| || || | |||| Sbjct 3127 GGTGAATCAAGAGGGGTTCTACTTAATTGCTCTAATGCTTGCTCAATATGATTATCATAA 3186 Query 6145 ATGTGGCAATCACCACCATTCCAAATAAATTCACCAACATCTAAACCCGTAATTTGT--- 6201 || || ||||||||||| ||| || |||||||| || ||| ||| || || | Sbjct 3187 ATATGACAATCACCACCTACCCATATGAATTCACCTACTCCTATACC---AAGTTCTGCG 3243 Query 6202 GCAATCATATGAGTTAGTAGTGAATA-ACTACTGATATTAAATGGAACTCCCAAAAATAG 6260 || | ||||||||||| | |||||| | |||| ||||| || ||||| || || || | Sbjct 3244 GCTAAAATATGAGTTAGCATTGAATAGAATACT-ATATTGAAAGGAACACCTAAGAACAT 3302 Query 6261 ATCAGCGGATCTTTGATGTA 6280 ||| ||| |||||||| || Sbjct 3303 ATCTGCGCTTCTTTGATATA 3322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1113387301211352