Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_027399.1
Length=346602
Score E
Sequences producing significant alignments: (Bits) Value
seq17421 161 2e-34
seq18712 84.2 5e-11
seq4088 84.2 5e-11
>seq17421
Length=2767
Score = 161 bits (178), Expect = 2e-34
Identities = 147/187 (79%), Gaps = 9/187 (5%)
Strand=Plus/Minus
Query 177838 ATTCCACAATCAGACGTATATGGTGTAAGTTACGTCGATGAAATCCAGAACAAGATCTCT 177897
|||||||||||| ||||||||||||||| |||||| ||| |||||| | |
Sbjct 408 ATTCCACAATCAAACGTATATGGTGTAATTTACGTTGATAAAATCC---------TTTAA 358
Query 177898 GGTACTCTAGGAAGTGGTGAATGTTAACCTAGACGGGTTTGTTAATTGGACGATAAGCAA 177957
|||| | ||||||||||||| |||||| | |||| ||| | |||||||||||||||
Sbjct 357 GGTAACCCTGGAAGTGGTGAATTGTAACCTGGGCGGGATTGATGTTTGGACGATAAGCAA 298
Query 177958 TTAATACTTGACTAGCAGGTTTAAACTAGAGGTGACTGTCCTTCACTAAACTGGAAAACC 178017
| || ||||| ||||| || ||||| |||||||| |||||||| | |||||||||||
Sbjct 297 ACATTAGTTGACAAGCAGCTTGAAACTTGAGGTGACATTCCTTCACCATACTGGAAAACC 238
Query 178018 GGGTGGA 178024
|||||||
Sbjct 237 GGGTGGA 231
Score = 109 bits (120), Expect = 1e-18
Identities = 127/170 (75%), Gaps = 1/170 (1%)
Strand=Plus/Minus
Query 177883 CAGAACAAGATCTCTGGTACTCTAGGAAGTGGTGAATGTTAACCTAGACGGGTTTGTTAA 177942
|||||||||||||||| | || | ||||| ||| | || || |||||||| |
Sbjct 688 CAGAACAAGATCTCTGAAAACCTTAGCAGTGGGAAAT-TAGACTAAGGCGGGTTTGATGT 630
Query 177943 TTGGACGATAAGCAATTAATACTTGACTAGCAGGTTTAAACTAGAGGTGACTGTCCTTCA 178002
|| ||||||| | || | || ||||| ||||| || ||||| |||||||| |||||||
Sbjct 629 TTTGACGATAGGGAAACATTAGTTGACAAGCAGCTTAAAACTTGAGGTGACATTCCTTCA 570
Query 178003 CTAAACTGGAAAACCGGGTGGACTTTTAATTAAAAAAGTGTTGAACAAAA 178052
| ||||||||||||||| |||| || | || || | || ||||||||
Sbjct 569 CCAAACTGGAAAACCGGATGGAATTATTATCAAGGAGCCGTCGAACAAAA 520
>seq18712
Length=4002
Score = 84.2 bits (92), Expect = 5e-11
Identities = 116/160 (73%), Gaps = 2/160 (1%)
Strand=Plus/Minus
Query 38398 GCAGATACATTCTTGGGAGTTCCACTGAATATCACATCATATTCAGTACTCACCCATATG 38457
||||||| ||||| || ||||| | ||||| || |||||| | || || |||||
Sbjct 3308 GCAGATATGTTCTTAGGTGTTCCTTTCAATATAGTATTCTATTCAATGCTAACTCATATT 3249
Query 38458 ATAGCACAAATTACTGGAT-TAGAAGTTGGTGAATTTATCTGGAACGGTGGAGATTGTCA 38516
|||| | | ||| | | ||| ||| |||||||| || ||| ||||| ||||||||
Sbjct 3248 TTAGC-CGCAGAACTTGGTATAGGAGTAGGTGAATTCATATGGGTAGGTGGTGATTGTCA 3190
Query 38517 TATTTACTTGAATCATATCGAACAAGTAAAAGAACAATTA 38556
|||||| |||||||| || |||| | ||| ||||||
Sbjct 3189 TATTTATGATAATCATATTGAGCAAGCATTAGAGCAATTA 3150
>seq4088
Length=5036
Score = 84.2 bits (92), Expect = 5e-11
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 178967 TTAGTTCAGTTGGATAGAACAACTGCCTTCTAAGCAGTAGGTCACTGGTTCGAGTCCAG 179025
|||| ||||||||||||| |||| ||||||||||| ||||||| |||||||||||||||
Sbjct 4254 TTAGCTCAGTTGGATAGAGCAACCGCCTTCTAAGCGGTAGGTCGCTGGTTCGAGTCCAG 4312
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1108554024727951
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |