Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_027399.1 Length=346602 Score E Sequences producing significant alignments: (Bits) Value seq17421 161 2e-34 seq18712 84.2 5e-11 seq4088 84.2 5e-11 >seq17421 Length=2767 Score = 161 bits (178), Expect = 2e-34 Identities = 147/187 (79%), Gaps = 9/187 (5%) Strand=Plus/Minus Query 177838 ATTCCACAATCAGACGTATATGGTGTAAGTTACGTCGATGAAATCCAGAACAAGATCTCT 177897 |||||||||||| ||||||||||||||| |||||| ||| |||||| | | Sbjct 408 ATTCCACAATCAAACGTATATGGTGTAATTTACGTTGATAAAATCC---------TTTAA 358 Query 177898 GGTACTCTAGGAAGTGGTGAATGTTAACCTAGACGGGTTTGTTAATTGGACGATAAGCAA 177957 |||| | ||||||||||||| |||||| | |||| ||| | ||||||||||||||| Sbjct 357 GGTAACCCTGGAAGTGGTGAATTGTAACCTGGGCGGGATTGATGTTTGGACGATAAGCAA 298 Query 177958 TTAATACTTGACTAGCAGGTTTAAACTAGAGGTGACTGTCCTTCACTAAACTGGAAAACC 178017 | || ||||| ||||| || ||||| |||||||| |||||||| | ||||||||||| Sbjct 297 ACATTAGTTGACAAGCAGCTTGAAACTTGAGGTGACATTCCTTCACCATACTGGAAAACC 238 Query 178018 GGGTGGA 178024 ||||||| Sbjct 237 GGGTGGA 231 Score = 109 bits (120), Expect = 1e-18 Identities = 127/170 (75%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 177883 CAGAACAAGATCTCTGGTACTCTAGGAAGTGGTGAATGTTAACCTAGACGGGTTTGTTAA 177942 |||||||||||||||| | || | ||||| ||| | || || |||||||| | Sbjct 688 CAGAACAAGATCTCTGAAAACCTTAGCAGTGGGAAAT-TAGACTAAGGCGGGTTTGATGT 630 Query 177943 TTGGACGATAAGCAATTAATACTTGACTAGCAGGTTTAAACTAGAGGTGACTGTCCTTCA 178002 || ||||||| | || | || ||||| ||||| || ||||| |||||||| ||||||| Sbjct 629 TTTGACGATAGGGAAACATTAGTTGACAAGCAGCTTAAAACTTGAGGTGACATTCCTTCA 570 Query 178003 CTAAACTGGAAAACCGGGTGGACTTTTAATTAAAAAAGTGTTGAACAAAA 178052 | ||||||||||||||| |||| || | || || | || |||||||| Sbjct 569 CCAAACTGGAAAACCGGATGGAATTATTATCAAGGAGCCGTCGAACAAAA 520 >seq18712 Length=4002 Score = 84.2 bits (92), Expect = 5e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 38398 GCAGATACATTCTTGGGAGTTCCACTGAATATCACATCATATTCAGTACTCACCCATATG 38457 ||||||| ||||| || ||||| | ||||| || |||||| | || || ||||| Sbjct 3308 GCAGATATGTTCTTAGGTGTTCCTTTCAATATAGTATTCTATTCAATGCTAACTCATATT 3249 Query 38458 ATAGCACAAATTACTGGAT-TAGAAGTTGGTGAATTTATCTGGAACGGTGGAGATTGTCA 38516 |||| | | ||| | | ||| ||| |||||||| || ||| ||||| |||||||| Sbjct 3248 TTAGC-CGCAGAACTTGGTATAGGAGTAGGTGAATTCATATGGGTAGGTGGTGATTGTCA 3190 Query 38517 TATTTACTTGAATCATATCGAACAAGTAAAAGAACAATTA 38556 |||||| |||||||| || |||| | ||| |||||| Sbjct 3189 TATTTATGATAATCATATTGAGCAAGCATTAGAGCAATTA 3150 >seq4088 Length=5036 Score = 84.2 bits (92), Expect = 5e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 178967 TTAGTTCAGTTGGATAGAACAACTGCCTTCTAAGCAGTAGGTCACTGGTTCGAGTCCAG 179025 |||| ||||||||||||| |||| ||||||||||| ||||||| ||||||||||||||| Sbjct 4254 TTAGCTCAGTTGGATAGAGCAACCGCCTTCTAAGCGGTAGGTCGCTGGTTCGAGTCCAG 4312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108554024727951