Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_027404.1 Length=167785 Score E Sequences producing significant alignments: (Bits) Value seq2789 122 9e-23 seq2698 105 7e-18 >seq2789 Length=15484 Score = 122 bits (134), Expect = 9e-23 Identities = 257/377 (68%), Gaps = 15/377 (4%) Strand=Plus/Plus Query 42991 tttAACATAAGGAG--AAAGTACTTTATCTACATTCGCAAAAGTCGTTCCGCCGTATTGG 43048 ||| |||||||| | ||| || | ||| | ||| || || ||||| || || Sbjct 3515 TTTTACATAAGGGGCTAAAATAAT--ATCGATATTGTTAATCGTTGTTCCACCATAAGTA 3572 Query 43049 TGAGAAGCAACTTGTGCAGTAATTTGCGCCATAATTGCAGTAGCAACTCCAATTGATTTA 43108 ||| || ||||| || | ||||| || | || || || || ||||||||| Sbjct 3573 TGACTTGCGACTTGCGCTATTATTTGAGCAGTTATAGCCGTTGCTGTTCCAATTGAACGT 3632 Query 43109 GGAGTTTCAATCTGCGCATTACCAAGCTTAAATCCGTTTTCAAGCATTCCTTTTAAATCT 43168 ||||||||||| | ||||| || | ||||| || ||||||||||||||||||||| Sbjct 3633 GGAGTTTCAATTTCAGCATTTCCTATTTTAAAGCCACCTTCAAGCATTCCTTTTAAATCA 3692 Query 43169 ACTAAACAGCAATTAGTAAATGGAAGAGCAGGGGAATAATCAATATCATGGAAATGAATA 43228 ||||| |||||| | ||||| | || |||||||| | |||||| ||||||| Sbjct 3693 ACTAACATACAATTAAACATTGGAAAAAATGGTGAATAATCTAAATCATGATAATGAATT 3752 Query 43229 ATTCCGCTTTCATGCGCTTTCATAATAAAAGAC----GGGACCAT---ATTTTTGGCAAT 43281 || ||||||| || ||| | | | | | || | || |||||| ||| Sbjct 3753 TCACCTTTTTCATGAGC-GTCA-ACT--ACGTCTTTGGGAAGTATATGATTTTTAGCATA 3808 Query 43282 GTGTTTAGACACAATACCAGCCATAAGGTCCCGTTGAGTTGGAAAAACACGAGAATCTTT 43341 |||||||| | |||||||| | | || | ||||||||||| |||| |||||| Sbjct 3809 ATGTTTAGAAATTATACCAGCTAACAAATCTCTTTGAGTTGGAATAACATTGCTATCTTT 3868 Query 43342 ATTAGCATTCTCGTTTA 43358 ||||||||| || |||| Sbjct 3869 ATTAGCATTTTCATTTA 3885 >seq2698 Length=11445 Score = 105 bits (116), Expect = 7e-18 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 61074 ATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACTGCATAACCGGATACA 61133 ||||| || | || ||||| || || | ||||||||| | ||| ||||| || || || Sbjct 5478 ATAACATCTTGTTGTTGTTCAGGTGTTAAAGAGTTAAATCTAACAGCATATCCTGAAACC 5419 Query 61134 CGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCTTCCAGAGTTTCACGA 61193 | || || | |||||| |||||||| ||||| | |||||||| || ||||| Sbjct 5418 CTAATTGTTAACTGCGGGTATTTTTCAGGATGTTCTACTGCATCAAGAAGTGTTTCTTTT 5359 Query 61194 CGCAGAACGTTTACGTTCAGGTGTTGACCACCTTCAATTTTAACTGTAGGCTGTTGCTCA 61253 || ||||||||||| || | ||||| |||||||||| | | || ||||| || ||| Sbjct 5358 CGAAGAACGTTTACATTTAAATGTTGTCCACCTTCAACTCTTACAGTAGGACTTTCTTCA 5299 Query 61254 ATT 61256 ||| Sbjct 5298 ATT 5296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 536575667419800