Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_027404.1
Length=167785
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 122 9e-23
seq2698 105 7e-18
>seq2789
Length=15484
Score = 122 bits (134), Expect = 9e-23
Identities = 257/377 (68%), Gaps = 15/377 (4%)
Strand=Plus/Plus
Query 42991 tttAACATAAGGAG--AAAGTACTTTATCTACATTCGCAAAAGTCGTTCCGCCGTATTGG 43048
||| |||||||| | ||| || | ||| | ||| || || ||||| || ||
Sbjct 3515 TTTTACATAAGGGGCTAAAATAAT--ATCGATATTGTTAATCGTTGTTCCACCATAAGTA 3572
Query 43049 TGAGAAGCAACTTGTGCAGTAATTTGCGCCATAATTGCAGTAGCAACTCCAATTGATTTA 43108
||| || ||||| || | ||||| || | || || || || |||||||||
Sbjct 3573 TGACTTGCGACTTGCGCTATTATTTGAGCAGTTATAGCCGTTGCTGTTCCAATTGAACGT 3632
Query 43109 GGAGTTTCAATCTGCGCATTACCAAGCTTAAATCCGTTTTCAAGCATTCCTTTTAAATCT 43168
||||||||||| | ||||| || | ||||| || |||||||||||||||||||||
Sbjct 3633 GGAGTTTCAATTTCAGCATTTCCTATTTTAAAGCCACCTTCAAGCATTCCTTTTAAATCA 3692
Query 43169 ACTAAACAGCAATTAGTAAATGGAAGAGCAGGGGAATAATCAATATCATGGAAATGAATA 43228
||||| |||||| | ||||| | || |||||||| | |||||| |||||||
Sbjct 3693 ACTAACATACAATTAAACATTGGAAAAAATGGTGAATAATCTAAATCATGATAATGAATT 3752
Query 43229 ATTCCGCTTTCATGCGCTTTCATAATAAAAGAC----GGGACCAT---ATTTTTGGCAAT 43281
|| ||||||| || ||| | | | | | || | || |||||| |||
Sbjct 3753 TCACCTTTTTCATGAGC-GTCA-ACT--ACGTCTTTGGGAAGTATATGATTTTTAGCATA 3808
Query 43282 GTGTTTAGACACAATACCAGCCATAAGGTCCCGTTGAGTTGGAAAAACACGAGAATCTTT 43341
|||||||| | |||||||| | | || | ||||||||||| |||| ||||||
Sbjct 3809 ATGTTTAGAAATTATACCAGCTAACAAATCTCTTTGAGTTGGAATAACATTGCTATCTTT 3868
Query 43342 ATTAGCATTCTCGTTTA 43358
||||||||| || ||||
Sbjct 3869 ATTAGCATTTTCATTTA 3885
>seq2698
Length=11445
Score = 105 bits (116), Expect = 7e-18
Identities = 133/183 (73%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 61074 ATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACTGCATAACCGGATACA 61133
||||| || | || ||||| || || | ||||||||| | ||| ||||| || || ||
Sbjct 5478 ATAACATCTTGTTGTTGTTCAGGTGTTAAAGAGTTAAATCTAACAGCATATCCTGAAACC 5419
Query 61134 CGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCTTCCAGAGTTTCACGA 61193
| || || | |||||| |||||||| ||||| | |||||||| || |||||
Sbjct 5418 CTAATTGTTAACTGCGGGTATTTTTCAGGATGTTCTACTGCATCAAGAAGTGTTTCTTTT 5359
Query 61194 CGCAGAACGTTTACGTTCAGGTGTTGACCACCTTCAATTTTAACTGTAGGCTGTTGCTCA 61253
|| ||||||||||| || | ||||| |||||||||| | | || ||||| || |||
Sbjct 5358 CGAAGAACGTTTACATTTAAATGTTGTCCACCTTCAACTCTTACAGTAGGACTTTCTTCA 5299
Query 61254 ATT 61256
|||
Sbjct 5298 ATT 5296
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 536575667419800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |