Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq12187 192 5e-44
seq4354 163 2e-35
>seq12187
Length=3570
Score = 192 bits (212), Expect = 5e-44
Identities = 450/659 (68%), Gaps = 30/659 (5%)
Strand=Plus/Plus
Query 43835 CATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAAT 43894
||||||||||| |||||||| ||||| || || || || || ||||||||||||
Sbjct 1103 CATTTTATATCGCATGTTTTGGCATTTTTCGCCGCCTCTGATGGCATTGTCAATGAAAAT 1162
Query 43895 TTGGTTAGTCGGTTTGCG-CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTT 43953
|||| ||| |||| | |||||||| ||| || | || || || ||||||||||| ||
Sbjct 1163 TTGG-TAGAGCGTTTCAGCCAAGAAGTACAAATAACTGAGGCGCGTTGTTTTTATGGTTT 1221
Query 43954 TCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACAT 44013
||||||||||| |||||| | || || ||||||||||| || |||| || || |||||
Sbjct 1222 CCAAATTGCCATGGAAAATGTGCACTCTGAAATGTACAGCATTTTGATTGACACCTACAT 1281
Query 44014 CAAAGATGGGCACGAGA-AGCATCGAT----TGTTTAATGCGATAGAAACAGTACCTGCG 44068
| | | ||| | | | | | ||| | ||||| || || ||||| | |||||
Sbjct 1282 --ACG--TGACACAAAACAACGT-GATTTTCTATTTAACGCCATTGAAACGCTGCCTGCT 1336
Query 44069 ATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT-AAATTCAAAT--GATTCTTTTGGA 44125
|||| | || || || |||||| | ||||| || |||| | ||||||
Sbjct 1337 GTTAAGAAGAAGGCTGATTGGGCCATGGCCTGGATCTCATCGAAATCGGCCAATTTTGGT 1396
Query 44126 GAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAG-GATCGTTT-GCGG 44183
|| || || | || ||||||| ||| || || |||||| ||||| | |||| ||
Sbjct 1397 GAGCGTATTATAGCATTTGCAGCTGTTGAGGGTATTTTC--TTCAGTGGCAGTTTCGCCT 1454
Query 44184 CCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAA 44243
| || || ||| | |||||||| ||| | |||||||| |||| || || |||||| | |
Sbjct 1455 CTATTTTCTGGCTTAAGAAACGTGGTCTCATGCCTGGCCTGACATTCTCCAATGAGCTGA 1514
Query 44244 TAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAG 44303
| ||||| |||||||| ||||| || ||||| || ||| | | | || | || |
Sbjct 1515 TTTCACGTGACGAAGGCTTGCATTGTGACTTTGCCTGTTTGATGTTCAAACAT-TTGGTG 1573
Query 44304 ACGATAAGCCTTCATGTAAGACAATTACAGATATTGT-TGTAGAGGCAGTAAAGATAGAA 44362
| || ||| || || || || || | ||| ||||| ||||| ||||||
Sbjct 1574 --CAGAAACCTAGTCGTGAGCGCATACTTGAAATCATATGT-GAGGCTGTAAAAATAGAA 1630
Query 44363 CAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAAT---GAACTTTTG 44419
||||| ||| | || || | ||||| ||| | || || |||||| |||||
Sbjct 1631 CAAGAGTTTCTCACTGATGCGCTGCCTGTGAATCTGATTGGCATGAATTGCAAACTT--- 1687
Query 44420 ATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAA 44478
||| ||||||| || | | || ||||| ||||| | ||| ||||| |||||
Sbjct 1688 ATGTCTGAATATATAGAGTTTGTGGCTGATCGCTTACTCGTCGAATTGGGTGTTGATAA 1746
>seq4354
Length=2790
Score = 163 bits (180), Expect = 2e-35
Identities = 278/400 (70%), Gaps = 16/400 (4%)
Strand=Plus/Minus
Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599
|| ||| ||| ||||| || || | |||||| | || || || || |||||| | |||
Sbjct 1418 AATAGTGGTTTACACATAATTATTTTTGATGAAATTGATGCCATTTGCAAGCAACGTGGT 1359
Query 19600 TCTGGTGTA------AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653
|| | | | | ||| || ||||||||||||||||||||| | || | ||| |
Sbjct 1358 TCGGTGGCAGGCAACAGTGGTGTGCATGACACTGTTGTCAATCAATTGTTGGCTAAAATC 1299
Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTA 19713
|| ||||| | ||| ||||||||||||| |||||||||||||| ||| | | || |
Sbjct 1298 GATGGTGTCGAACAATTGAATAATATTTTGGTTATTGGCATGACAAATCGTCGTGACATG 1239
Query 19714 ATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCC 19773
|| ||| ||||| | || || ||||| || ||| | | || ||||||| ||| |||
Sbjct 1238 ATTGACGATGCCTTGATGCGTCCTGGTCGTTTAGAAGTGCAAATGGAAATTAGCTTGCCC 1179
Query 19774 GATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAAC 19833
||||| ||||| ||| ||||| | ||||||||||| | |||||| | | |||
Sbjct 1178 AATGAACAGGGACGAGTGCAAATTCTCAACATACATACTGCGCGCATGCGTGATTACAAC 1119
Query 19834 CTTTTAAATGAC----GATGTAGATCTAGAA-GAAATTGCAGCGGCTACCAAAAACTATA 19888
|| || | |||||||| || || || ||||||| || || || | |
Sbjct 1118 ----AAATTGGCACCAGATGTAGA-CTGCAAGGAGATTGCAGAATTGACAAAGAATTTCA 1064
Query 19889 GCGGCGCAGAACTTGAGGGATTAGTGAGGGCCGCCCAATC 19928
| || |||||| | ||||| || ||| | || ||||||||
Sbjct 1063 GTGGTGCAGAATTGGAGGGTTTGGTGCGTGCTGCCCAATC 1024
Score = 100 bits (110), Expect = 2e-16
Identities = 174/252 (69%), Gaps = 6/252 (2%)
Strand=Plus/Minus
Query 19285 GCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTT 19344
||||||| |||||||| || | |||| | | ||||||||||||| || || ||
Sbjct 1735 GCATTTGCCTCGCGTGTCTTCCCACCAGAACTTGTAGAACAATTGGGATGCAAGCACGTC 1676
Query 19345 CGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTT 19404
|| | |||| || || ||||| ||| ||| || || || || || | || ||
Sbjct 1675 AAAGGCATACTGCTCTACGGCCCACCCGGTACTGGCAAGACCTTGATGGCTCGTCAAATT 1616
Query 19405 AGTAAATTACTTA---CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAAT 19461
||||| | | | || | ||||| |||||||| |||||||| | || || |
Sbjct 1615 GGTAAAATGTTGAATGCACGAGAACCT---AAAATTGTGAATGGTCCACAGATTCTAGAC 1559
Query 19462 AAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAA 19521
|||||||| ||| |||| || | || | || || | |||||||| ||||||||||||
Sbjct 1558 AAATATGTGGGTGAATCCGAGGCCAACATTCGTCGACTTTTTGCTGAAGCTGAAGAAGAA 1499
Query 19522 CAAAAACGTTTA 19533
|||||||| ||
Sbjct 1498 GAAAAACGTGTA 1487
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397305598799245
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |