Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq12187 192 5e-44 seq4354 163 2e-35 >seq12187 Length=3570 Score = 192 bits (212), Expect = 5e-44 Identities = 450/659 (68%), Gaps = 30/659 (5%) Strand=Plus/Plus Query 43835 CATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAAT 43894 ||||||||||| |||||||| ||||| || || || || || |||||||||||| Sbjct 1103 CATTTTATATCGCATGTTTTGGCATTTTTCGCCGCCTCTGATGGCATTGTCAATGAAAAT 1162 Query 43895 TTGGTTAGTCGGTTTGCG-CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTT 43953 |||| ||| |||| | |||||||| ||| || | || || || ||||||||||| || Sbjct 1163 TTGG-TAGAGCGTTTCAGCCAAGAAGTACAAATAACTGAGGCGCGTTGTTTTTATGGTTT 1221 Query 43954 TCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACAT 44013 ||||||||||| |||||| | || || ||||||||||| || |||| || || ||||| Sbjct 1222 CCAAATTGCCATGGAAAATGTGCACTCTGAAATGTACAGCATTTTGATTGACACCTACAT 1281 Query 44014 CAAAGATGGGCACGAGA-AGCATCGAT----TGTTTAATGCGATAGAAACAGTACCTGCG 44068 | | | ||| | | | | | ||| | ||||| || || ||||| | ||||| Sbjct 1282 --ACG--TGACACAAAACAACGT-GATTTTCTATTTAACGCCATTGAAACGCTGCCTGCT 1336 Query 44069 ATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT-AAATTCAAAT--GATTCTTTTGGA 44125 |||| | || || || |||||| | ||||| || |||| | |||||| Sbjct 1337 GTTAAGAAGAAGGCTGATTGGGCCATGGCCTGGATCTCATCGAAATCGGCCAATTTTGGT 1396 Query 44126 GAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAG-GATCGTTT-GCGG 44183 || || || | || ||||||| ||| || || |||||| ||||| | |||| || Sbjct 1397 GAGCGTATTATAGCATTTGCAGCTGTTGAGGGTATTTTC--TTCAGTGGCAGTTTCGCCT 1454 Query 44184 CCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAA 44243 | || || ||| | |||||||| ||| | |||||||| |||| || || |||||| | | Sbjct 1455 CTATTTTCTGGCTTAAGAAACGTGGTCTCATGCCTGGCCTGACATTCTCCAATGAGCTGA 1514 Query 44244 TAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAG 44303 | ||||| |||||||| ||||| || ||||| || ||| | | | || | || | Sbjct 1515 TTTCACGTGACGAAGGCTTGCATTGTGACTTTGCCTGTTTGATGTTCAAACAT-TTGGTG 1573 Query 44304 ACGATAAGCCTTCATGTAAGACAATTACAGATATTGT-TGTAGAGGCAGTAAAGATAGAA 44362 | || ||| || || || || || | ||| ||||| ||||| |||||| Sbjct 1574 --CAGAAACCTAGTCGTGAGCGCATACTTGAAATCATATGT-GAGGCTGTAAAAATAGAA 1630 Query 44363 CAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAAT---GAACTTTTG 44419 ||||| ||| | || || | ||||| ||| | || || |||||| ||||| Sbjct 1631 CAAGAGTTTCTCACTGATGCGCTGCCTGTGAATCTGATTGGCATGAATTGCAAACTT--- 1687 Query 44420 ATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAA 44478 ||| ||||||| || | | || ||||| ||||| | ||| ||||| ||||| Sbjct 1688 ATGTCTGAATATATAGAGTTTGTGGCTGATCGCTTACTCGTCGAATTGGGTGTTGATAA 1746 >seq4354 Length=2790 Score = 163 bits (180), Expect = 2e-35 Identities = 278/400 (70%), Gaps = 16/400 (4%) Strand=Plus/Minus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||| ||||| || || | |||||| | || || || || |||||| | ||| Sbjct 1418 AATAGTGGTTTACACATAATTATTTTTGATGAAATTGATGCCATTTGCAAGCAACGTGGT 1359 Query 19600 TCTGGTGTA------AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 || | | | | ||| || ||||||||||||||||||||| | || | ||| | Sbjct 1358 TCGGTGGCAGGCAACAGTGGTGTGCATGACACTGTTGTCAATCAATTGTTGGCTAAAATC 1299 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTA 19713 || ||||| | ||| ||||||||||||| |||||||||||||| ||| | | || | Sbjct 1298 GATGGTGTCGAACAATTGAATAATATTTTGGTTATTGGCATGACAAATCGTCGTGACATG 1239 Query 19714 ATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCC 19773 || ||| ||||| | || || ||||| || ||| | | || ||||||| ||| ||| Sbjct 1238 ATTGACGATGCCTTGATGCGTCCTGGTCGTTTAGAAGTGCAAATGGAAATTAGCTTGCCC 1179 Query 19774 GATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAAC 19833 ||||| ||||| ||| ||||| | ||||||||||| | |||||| | | ||| Sbjct 1178 AATGAACAGGGACGAGTGCAAATTCTCAACATACATACTGCGCGCATGCGTGATTACAAC 1119 Query 19834 CTTTTAAATGAC----GATGTAGATCTAGAA-GAAATTGCAGCGGCTACCAAAAACTATA 19888 || || | |||||||| || || || ||||||| || || || | | Sbjct 1118 ----AAATTGGCACCAGATGTAGA-CTGCAAGGAGATTGCAGAATTGACAAAGAATTTCA 1064 Query 19889 GCGGCGCAGAACTTGAGGGATTAGTGAGGGCCGCCCAATC 19928 | || |||||| | ||||| || ||| | || |||||||| Sbjct 1063 GTGGTGCAGAATTGGAGGGTTTGGTGCGTGCTGCCCAATC 1024 Score = 100 bits (110), Expect = 2e-16 Identities = 174/252 (69%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 19285 GCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTT 19344 ||||||| |||||||| || | |||| | | ||||||||||||| || || || Sbjct 1735 GCATTTGCCTCGCGTGTCTTCCCACCAGAACTTGTAGAACAATTGGGATGCAAGCACGTC 1676 Query 19345 CGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTT 19404 || | |||| || || ||||| ||| ||| || || || || || | || || Sbjct 1675 AAAGGCATACTGCTCTACGGCCCACCCGGTACTGGCAAGACCTTGATGGCTCGTCAAATT 1616 Query 19405 AGTAAATTACTTA---CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAAT 19461 ||||| | | | || | ||||| |||||||| |||||||| | || || | Sbjct 1615 GGTAAAATGTTGAATGCACGAGAACCT---AAAATTGTGAATGGTCCACAGATTCTAGAC 1559 Query 19462 AAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAA 19521 |||||||| ||| |||| || | || | || || | |||||||| |||||||||||| Sbjct 1558 AAATATGTGGGTGAATCCGAGGCCAACATTCGTCGACTTTTTGCTGAAGCTGAAGAAGAA 1499 Query 19522 CAAAAACGTTTA 19533 |||||||| || Sbjct 1498 GAAAAACGTGTA 1487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397305598799245