Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq4853 158 1e-33
seq2021 152 4e-32
>seq4853
Length=2014
Score = 158 bits (174), Expect = 1e-33
Identities = 740/1153 (64%), Gaps = 39/1153 (3%)
Strand=Plus/Plus
Query 130826 TTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATTA 130885
|| ||||| | |||||||| || | || || ||||| ||| | | | |||||||
Sbjct 3 TTATTGCCCATGATTTGTGCAGTGGAGGCTGTAGGCATTGGTGCAATGAGCAAAGAATTA 62
Query 130886 CGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTAGGT 130945
|| | || || | | ||||| ||||| || |||||| ||||||| ||||||
Sbjct 63 CGCACGCCATGTTTAGCAATTTTCTCCTTCAGCTCCGCCCAATTCCATAGATCAGTAGGT 122
Query 130946 TTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGATTCGAAC 131005
| || | |||||||||| | |||| || || || ||| | || | | |
Sbjct 123 GTT---TTTTGCCACATATCATACTGTAAAATTCCCTTGCTGACAGGTGAGCCCGCATAA 179
Query 131006 GATTCGTAGATTCCTT-CGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATA 131064
| ||| ||| || | | | ||||| || ||| |||||||| || || |||||
Sbjct 180 GTTTCATAGGGACCCAGCTTCTC-AGCCAACTCACAGCTGGCTTCCAAGGCACCATAATA 238
Query 131065 AATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTT 131124
||| ||||| ||||||| ||||| | |||| | || || || ||| |
Sbjct 239 AATCGTTTCAAATATTTGTTGATTTAGCTTAAATGCTTCCTCACTTTCATATGGATAACG 298
Query 131125 CATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGTTTTAA 131184
||| | || || || ||||||| || |||| |||| || | || | ||| |
Sbjct 299 CATGAGTATCAATGCATCTGCGAATCCTTGTACTCCAATACCTATGGGACGATGACGCAT 358
Query 131185 ATTACATTTACGCGAA-CATTCGGTGG--GATAAAGGTTAATGTCAATTATTTTGTTTAA 131241
||| | |||| | | ||| | | || || ||||| || |||||||| ||
Sbjct 359 ATTTGA---ACGCTTGGCCTCCGGCAGCGGGTAGTAATTGATGTCTATGATTTTGTTCAA 415
Query 131242 ATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCAGTTTC 131301
||| || |||||||| | || ||| | ||| | |||||| | || | ||
Sbjct 416 ATTACGTGTTACAATTTTAGCAACTTCTTTGAGTTTTTTAAAATCATAAGTCT---TGTC 472
Query 131302 GAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGTCATA 131361
|||| ||||| ||| | ||||| || | ||||||||| || |||| ||
Sbjct 473 TGGGTTGACAAACATATTGAGTGCAATTGAGGCTAAATTACAAACAGCAATTTCATCCGG 532
Query 131362 ATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTG 131421
| |||| | |||||||| | ||| ||||| |||| ||| || ||||| | ||| ||
Sbjct 533 TGCCGAATATTCTACAATTTCAGTGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTG 592
Query 131422 TTGATTGCTTTTAGCATTCACATGG-TCCTTGTACATCATGTAGGGCGTGCCCGTTTCGA 131480
|||||| || || ||| ||| | ||||| || | ||| || || ||||| ||||| |
Sbjct 593 TTGATTACTCTTGCGATT-ACAAGCATCCTTATAGAGCATATATGGAGTGCCAGTTTCCA 651
Query 131481 CTTGAGTTTCAATAATGT--ATCGAAAGAGTTTTCGAGCAGACAATTGATATTTGTATTG 131538
|||||| || |||||| | | | | |||| |||| || | | | ||||
Sbjct 652 CTTGAGCCTCTATAATGGCAAACCACAAGGTTT--GAGCT-----TTAACAGTGCGATTG 704
Query 131539 GC-CGCGTTTTTCG-TAAT-TTTCGTACAACGTT--TCAAAGTTTTGGCC--AAACGAAC 131591
|| || || || | || |||| | || ||| || || | || || ||||
Sbjct 705 GCACGACCTTCACGCTCATATTTCTCATAAAGTTGCTCGAATTCTTCACCCCAAACTTCA 764
Query 131592 TGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGT-TCAACT 131650
||| | ||| || | | || ||||| || ||||| |||| | ||| || ||
Sbjct 765 TGT--AGTCCGGGGCACTTGTGTGGGCACATGAGTGACCAATCGCCAT-CTGCCTCCACA 821
Query 131651 CGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCT 131710
|| ||||| ||||| || || | ||| | || || || | ||||| || | ||||
Sbjct 822 CGTTTCATGAACAAGTCGGGTATCCACAGAGCATAGAATAAATCTCGTGCACGATACTCT 881
Query 131711 TCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCC 131770
|| | || || |||| ||||||| ||||| || || || |||| ||||||||||||
Sbjct 882 TCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAGGGTTCC 941
Query 131771 AAATACACTGCCATTGCGCCTTTGCGCTTACCGCCT---TGATTAACATGACGAACCATG 131827
||||| | || | || ||| || || |||||| |||| || | || ||| |
Sbjct 942 AAATAGATGGCGAAGGCACCTGGACGTTTGCCGCCTCCCTGATCCACGTAGCGCGCCACG 1001
Query 131828 TTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATG 131887
|| ||| | || |||| ||| ||| | ||||| || | | | ||||| |||| ||||
Sbjct 1002 TTATTGAACACACGCAGCATAGGCACTAAACCATTAGAGGTGCCATTCGTGCCAGCAATG 1061
Query 131888 TAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAG 131947
|||| ||||| | || || || || || ||||| || || || | || |||
Sbjct 1062 CCCGTGCCTTTGGCGCGTATGCAATGCACATTCAGGCCAATGCCGCCTGCGGACTTGGAG 1121
Query 131948 ATTAGTGCGCATT 131960
|| | |||||||
Sbjct 1122 ATCATGGCGCATT 1134
>seq2021
Length=2943
Score = 152 bits (168), Expect = 4e-32
Identities = 948/1500 (63%), Gaps = 78/1500 (5%)
Strand=Plus/Minus
Query 130409 TCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCTGTT 130468
|| || || ||||| || ||||||| || ||||| ||||||||||||||||| || ||
Sbjct 2149 TCCACAGTAAATTGTATAGCATTGGCAGCTGGCTTCGTGCGCAAATAATACATACCGGTC 2090
Query 130469 TTGAGTCCAATTTTGTGTCCATA---AT-TGTGGATGCTGCACATTGTTTGGTAATTGGG 130524
|| | || ||| || || || | |||||| || | | ||||| ||
Sbjct 2089 TTCAAGCCTGCTTTCCAACCGTAGAAATGTATGGATGT----CAGTTTACCATAATTCGG 2034
Query 130525 TTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAGC 130584
| ||||| |||||| | |||||| |||||| |||||||| || | || || ||
Sbjct 2033 CTCAGCCACATGTATGTTAAACGATTGACTTTGATCTATAAAAGCACCACGATCAGCTGC 1974
Query 130585 CATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATGTG 130644
||| | | || ||| ||||||||| | |||||||| | || | | ||
Sbjct 1973 CATTTTAATAGACGTCTTAACAGAAATCTCCCAAACTGTCTTGTACAAGTCACGCACATG 1914
Query 130645 TTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCGCAT 130704
| ||||| ||| |||| ||| | | || | | |||||| || || |||
Sbjct 1913 CTGCGGTATACGCTCAATATTTTGTATGGATCCACGTTCAGATATAATATCATTTTTCAT 1854
Query 130705 ACTTTTATCGTACAATCCAAGCT-GTACAAGATCTTTTACCAAATGATTATTAATGATTT 130763
| | ||| | | |||||| | ||| ||| || |||||||| ||| | | |
Sbjct 1853 ATCATCATCCCATAGATCAAGCTCGGTCAA-ATCACGTAGCAAATGATGATTCACCACCT 1795
Query 130764 GAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATT 130823
| || ||||||| || || || | || || || || | || ||||| ||||
Sbjct 1794 GGAATTCACCAGACAATACACGACGTGTATAGATATTAGAAGTATAAGGCTCAAAAGATT 1735
Query 130824 CGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAAT 130883
| || ||||| | |||||||| || | || || ||||| ||| | | | |||||
Sbjct 1734 CATTATTGCCCATGATTTGTGCAGTGGAGGCCGTAGGCATTGGTGCAATAAGCAAAGAAT 1675
Query 130884 TACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTAG 130943
|||| | || || | | ||||| ||||| || |||||| ||||||| ||||
Sbjct 1674 TACGCACGCCATGTTTAGCAATTTTCTCCTTCAGCTCCGCCCAATTCCATAGATCAGTAG 1615
Query 130944 GTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTG----GCGGGACTGGAT 130999
|| | || | |||||||||| | |||| || || || ||| ||| | | | ||
Sbjct 1614 GTGTT---TTTTGCCACATATCATACTGTAAAATTCCCTTGCTGACAGGCGAGCCCGCAT 1558
Query 131000 TCGAACGATTCGTA---GATTCC--------TTC-----GACACG-------AGCCAGGT 131036
| | ||| || || || ||| ||| | ||||| |
Sbjct 1557 ----AAGTTTCATAANTGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCAGCCAACT 1502
Query 131037 CGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTT 131096
| ||| |||||||| || || |||||||| ||||| ||||||| ||||| |
Sbjct 1501 CACAGCTGGCTTCCAAGGCACCATAATAAATCGTTTCAAATATTTGTTGATTTAGCTTAA 1442
Query 131097 TCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTA 131156
|||| | || || || ||| | ||| | || || || ||||||| || ||||
Sbjct 1441 ATGCTTCCTCACTTTCATATGGATAACGCATGAGTATTAATGCATCTGCGAATCCTTGTA 1382
Query 131157 TCCCAACGCCCACCGGTCTATGTTTTAAATTACATTTACGCGAA-CATTCGGTGG--GAT 131213
|||| || | || | ||| | ||| | |||| | | ||| | | |
Sbjct 1381 CGCCAATACCTATGGGACGATGACGCATATTTGA---ACGCTTGGCCTCCGGCAGCGGGT 1325
Query 131214 AAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCA 131273
| || ||||| || |||||||| ||||| || |||||||| | || ||| |
Sbjct 1324 AGTAATTGATGTCTATGATTTTGTTCAAATTACGTGTTACAATTTTAGCAACTTCTTTGA 1265
Query 131274 ATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTACACATATTGACG 131333
||| | |||||| | || | || |||| ||||| ||| | ||||| |
Sbjct 1264 GTTTTTTAAAATCATAAGTCT---TGTCTGGGTTGACAAACATATTGAGTGCAATTGAGG 1208
Query 131334 CCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAAT 131393
| | ||||||||| || |||| || | |||| | |||||||| | ||| ||||
Sbjct 1207 CTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTACAATTTCAGTGCATAAAT 1148
Query 131394 TACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATGG-TCCTTG 131452
| |||| ||| || ||||| | ||| |||||||| || || ||| ||| | |||||
Sbjct 1147 TGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGATT-ACAAGCATCCTTA 1089
Query 131453 TACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGT--ATCGAAAGAGTT 131510
|| | ||| || || ||||| ||||| || |||| || |||||| | | | | |||
Sbjct 1088 TAGAGCATATATGGAGTGCCAGTTTCCACCTGAGCCTCTATAATGGCAAACCACAAGGTT 1029
Query 131511 TTCGAGCAGACAATTGATATTTGTATTGGC-CGCGTTTTTCG-TAAT-TTTCGTACAACG 131567
| |||| || | | | |||||| || || || | || |||| | || |
Sbjct 1028 T--GAGCT-----TTAACAGTGCGATTGGCACGACCTTCACGCTCATATTTCTCATAAAG 976
Query 131568 TT--TCAAAGTTTTGGCC--AAACGAACTGTCCAAATTGGGACATTCGCTGGGACACATT 131623
|| || || | || || |||| ||| | ||| || | | || |||||
Sbjct 975 TTGCTCGAATTCTTCACCCCAAACTTCATGT--AGTCCGGGGCACTTGTGTGGGCACATG 918
Query 131624 AGCGACCACACGCCGTTCTGT-TCAACTCGCTTCATAAACAAATCCGGCACCCATAACGC 131682
|| ||||| |||| | ||| || || || ||||| || || || || | ||||| ||
Sbjct 917 AGTGACCAATCGCCAT-CTGCCTCCACACGTTTCATGAATAAGTCGGGTATCCATAGAGC 859
Query 131683 GTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAA 131742
|| || | ||||| || | |||||| | || || |||| ||||||| |||||
Sbjct 858 ATAAAATAAATCTCGTGCACGATACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAA 799
Query 131743 GTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTTACC 131802
|| || || |||| ||||||||||| ||||| | || | |||||| || || ||
Sbjct 798 CTCAAATATATCCGAGTGCCAGGGTTCTAAATAGATGGCGAAGGCGCCTGGACGTTTGCC 739
Query 131803 GCCT---TGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACC 131859
|||| |||| || | || ||| ||| ||| | || |||| ||| ||| | |||||
Sbjct 738 GCCTCCCTGATCCACGTAGCGCGCCACGTTATTGAACACACGCAGCATAGGCACTAAACC 679
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424773600706488
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