Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq4853 158 1e-33 seq2021 152 4e-32 >seq4853 Length=2014 Score = 158 bits (174), Expect = 1e-33 Identities = 740/1153 (64%), Gaps = 39/1153 (3%) Strand=Plus/Plus Query 130826 TTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATTA 130885 || ||||| | |||||||| || | || || ||||| ||| | | | ||||||| Sbjct 3 TTATTGCCCATGATTTGTGCAGTGGAGGCTGTAGGCATTGGTGCAATGAGCAAAGAATTA 62 Query 130886 CGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTAGGT 130945 || | || || | | ||||| ||||| || |||||| ||||||| |||||| Sbjct 63 CGCACGCCATGTTTAGCAATTTTCTCCTTCAGCTCCGCCCAATTCCATAGATCAGTAGGT 122 Query 130946 TTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGATTCGAAC 131005 | || | |||||||||| | |||| || || || ||| | || | | | Sbjct 123 GTT---TTTTGCCACATATCATACTGTAAAATTCCCTTGCTGACAGGTGAGCCCGCATAA 179 Query 131006 GATTCGTAGATTCCTT-CGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATA 131064 | ||| ||| || | | | ||||| || ||| |||||||| || || ||||| Sbjct 180 GTTTCATAGGGACCCAGCTTCTC-AGCCAACTCACAGCTGGCTTCCAAGGCACCATAATA 238 Query 131065 AATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTT 131124 ||| ||||| ||||||| ||||| | |||| | || || || ||| | Sbjct 239 AATCGTTTCAAATATTTGTTGATTTAGCTTAAATGCTTCCTCACTTTCATATGGATAACG 298 Query 131125 CATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGTTTTAA 131184 ||| | || || || ||||||| || |||| |||| || | || | ||| | Sbjct 299 CATGAGTATCAATGCATCTGCGAATCCTTGTACTCCAATACCTATGGGACGATGACGCAT 358 Query 131185 ATTACATTTACGCGAA-CATTCGGTGG--GATAAAGGTTAATGTCAATTATTTTGTTTAA 131241 ||| | |||| | | ||| | | || || ||||| || |||||||| || Sbjct 359 ATTTGA---ACGCTTGGCCTCCGGCAGCGGGTAGTAATTGATGTCTATGATTTTGTTCAA 415 Query 131242 ATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCAGTTTC 131301 ||| || |||||||| | || ||| | ||| | |||||| | || | || Sbjct 416 ATTACGTGTTACAATTTTAGCAACTTCTTTGAGTTTTTTAAAATCATAAGTCT---TGTC 472 Query 131302 GAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGTCATA 131361 |||| ||||| ||| | ||||| || | ||||||||| || |||| || Sbjct 473 TGGGTTGACAAACATATTGAGTGCAATTGAGGCTAAATTACAAACAGCAATTTCATCCGG 532 Query 131362 ATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTG 131421 | |||| | |||||||| | ||| ||||| |||| ||| || ||||| | ||| || Sbjct 533 TGCCGAATATTCTACAATTTCAGTGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTG 592 Query 131422 TTGATTGCTTTTAGCATTCACATGG-TCCTTGTACATCATGTAGGGCGTGCCCGTTTCGA 131480 |||||| || || ||| ||| | ||||| || | ||| || || ||||| ||||| | Sbjct 593 TTGATTACTCTTGCGATT-ACAAGCATCCTTATAGAGCATATATGGAGTGCCAGTTTCCA 651 Query 131481 CTTGAGTTTCAATAATGT--ATCGAAAGAGTTTTCGAGCAGACAATTGATATTTGTATTG 131538 |||||| || |||||| | | | | |||| |||| || | | | |||| Sbjct 652 CTTGAGCCTCTATAATGGCAAACCACAAGGTTT--GAGCT-----TTAACAGTGCGATTG 704 Query 131539 GC-CGCGTTTTTCG-TAAT-TTTCGTACAACGTT--TCAAAGTTTTGGCC--AAACGAAC 131591 || || || || | || |||| | || ||| || || | || || |||| Sbjct 705 GCACGACCTTCACGCTCATATTTCTCATAAAGTTGCTCGAATTCTTCACCCCAAACTTCA 764 Query 131592 TGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGT-TCAACT 131650 ||| | ||| || | | || ||||| || ||||| |||| | ||| || || Sbjct 765 TGT--AGTCCGGGGCACTTGTGTGGGCACATGAGTGACCAATCGCCAT-CTGCCTCCACA 821 Query 131651 CGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCT 131710 || ||||| ||||| || || | ||| | || || || | ||||| || | |||| Sbjct 822 CGTTTCATGAACAAGTCGGGTATCCACAGAGCATAGAATAAATCTCGTGCACGATACTCT 881 Query 131711 TCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCC 131770 || | || || |||| ||||||| ||||| || || || |||| |||||||||||| Sbjct 882 TCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAGGGTTCC 941 Query 131771 AAATACACTGCCATTGCGCCTTTGCGCTTACCGCCT---TGATTAACATGACGAACCATG 131827 ||||| | || | || ||| || || |||||| |||| || | || ||| | Sbjct 942 AAATAGATGGCGAAGGCACCTGGACGTTTGCCGCCTCCCTGATCCACGTAGCGCGCCACG 1001 Query 131828 TTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATG 131887 || ||| | || |||| ||| ||| | ||||| || | | | ||||| |||| |||| Sbjct 1002 TTATTGAACACACGCAGCATAGGCACTAAACCATTAGAGGTGCCATTCGTGCCAGCAATG 1061 Query 131888 TAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAG 131947 |||| ||||| | || || || || || ||||| || || || | || ||| Sbjct 1062 CCCGTGCCTTTGGCGCGTATGCAATGCACATTCAGGCCAATGCCGCCTGCGGACTTGGAG 1121 Query 131948 ATTAGTGCGCATT 131960 || | ||||||| Sbjct 1122 ATCATGGCGCATT 1134 >seq2021 Length=2943 Score = 152 bits (168), Expect = 4e-32 Identities = 948/1500 (63%), Gaps = 78/1500 (5%) Strand=Plus/Minus Query 130409 TCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCTGTT 130468 || || || ||||| || ||||||| || ||||| ||||||||||||||||| || || Sbjct 2149 TCCACAGTAAATTGTATAGCATTGGCAGCTGGCTTCGTGCGCAAATAATACATACCGGTC 2090 Query 130469 TTGAGTCCAATTTTGTGTCCATA---AT-TGTGGATGCTGCACATTGTTTGGTAATTGGG 130524 || | || ||| || || || | |||||| || | | ||||| || Sbjct 2089 TTCAAGCCTGCTTTCCAACCGTAGAAATGTATGGATGT----CAGTTTACCATAATTCGG 2034 Query 130525 TTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAGC 130584 | ||||| |||||| | |||||| |||||| |||||||| || | || || || Sbjct 2033 CTCAGCCACATGTATGTTAAACGATTGACTTTGATCTATAAAAGCACCACGATCAGCTGC 1974 Query 130585 CATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATGTG 130644 ||| | | || ||| ||||||||| | |||||||| | || | | || Sbjct 1973 CATTTTAATAGACGTCTTAACAGAAATCTCCCAAACTGTCTTGTACAAGTCACGCACATG 1914 Query 130645 TTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCGCAT 130704 | ||||| ||| |||| ||| | | || | | |||||| || || ||| Sbjct 1913 CTGCGGTATACGCTCAATATTTTGTATGGATCCACGTTCAGATATAATATCATTTTTCAT 1854 Query 130705 ACTTTTATCGTACAATCCAAGCT-GTACAAGATCTTTTACCAAATGATTATTAATGATTT 130763 | | ||| | | |||||| | ||| ||| || |||||||| ||| | | | Sbjct 1853 ATCATCATCCCATAGATCAAGCTCGGTCAA-ATCACGTAGCAAATGATGATTCACCACCT 1795 Query 130764 GAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATT 130823 | || ||||||| || || || | || || || || | || ||||| |||| Sbjct 1794 GGAATTCACCAGACAATACACGACGTGTATAGATATTAGAAGTATAAGGCTCAAAAGATT 1735 Query 130824 CGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAAT 130883 | || ||||| | |||||||| || | || || ||||| ||| | | | ||||| Sbjct 1734 CATTATTGCCCATGATTTGTGCAGTGGAGGCCGTAGGCATTGGTGCAATAAGCAAAGAAT 1675 Query 130884 TACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTAG 130943 |||| | || || | | ||||| ||||| || |||||| ||||||| |||| Sbjct 1674 TACGCACGCCATGTTTAGCAATTTTCTCCTTCAGCTCCGCCCAATTCCATAGATCAGTAG 1615 Query 130944 GTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTG----GCGGGACTGGAT 130999 || | || | |||||||||| | |||| || || || ||| ||| | | | || Sbjct 1614 GTGTT---TTTTGCCACATATCATACTGTAAAATTCCCTTGCTGACAGGCGAGCCCGCAT 1558 Query 131000 TCGAACGATTCGTA---GATTCC--------TTC-----GACACG-------AGCCAGGT 131036 | | ||| || || || ||| ||| | ||||| | Sbjct 1557 ----AAGTTTCATAANTGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCAGCCAACT 1502 Query 131037 CGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTT 131096 | ||| |||||||| || || |||||||| ||||| ||||||| ||||| | Sbjct 1501 CACAGCTGGCTTCCAAGGCACCATAATAAATCGTTTCAAATATTTGTTGATTTAGCTTAA 1442 Query 131097 TCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTA 131156 |||| | || || || ||| | ||| | || || || ||||||| || |||| Sbjct 1441 ATGCTTCCTCACTTTCATATGGATAACGCATGAGTATTAATGCATCTGCGAATCCTTGTA 1382 Query 131157 TCCCAACGCCCACCGGTCTATGTTTTAAATTACATTTACGCGAA-CATTCGGTGG--GAT 131213 |||| || | || | ||| | ||| | |||| | | ||| | | | Sbjct 1381 CGCCAATACCTATGGGACGATGACGCATATTTGA---ACGCTTGGCCTCCGGCAGCGGGT 1325 Query 131214 AAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCA 131273 | || ||||| || |||||||| ||||| || |||||||| | || ||| | Sbjct 1324 AGTAATTGATGTCTATGATTTTGTTCAAATTACGTGTTACAATTTTAGCAACTTCTTTGA 1265 Query 131274 ATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTACACATATTGACG 131333 ||| | |||||| | || | || |||| ||||| ||| | ||||| | Sbjct 1264 GTTTTTTAAAATCATAAGTCT---TGTCTGGGTTGACAAACATATTGAGTGCAATTGAGG 1208 Query 131334 CCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAAT 131393 | | ||||||||| || |||| || | |||| | |||||||| | ||| |||| Sbjct 1207 CTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTACAATTTCAGTGCATAAAT 1148 Query 131394 TACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATGG-TCCTTG 131452 | |||| ||| || ||||| | ||| |||||||| || || ||| ||| | ||||| Sbjct 1147 TGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGATT-ACAAGCATCCTTA 1089 Query 131453 TACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGT--ATCGAAAGAGTT 131510 || | ||| || || ||||| ||||| || |||| || |||||| | | | | ||| Sbjct 1088 TAGAGCATATATGGAGTGCCAGTTTCCACCTGAGCCTCTATAATGGCAAACCACAAGGTT 1029 Query 131511 TTCGAGCAGACAATTGATATTTGTATTGGC-CGCGTTTTTCG-TAAT-TTTCGTACAACG 131567 | |||| || | | | |||||| || || || | || |||| | || | Sbjct 1028 T--GAGCT-----TTAACAGTGCGATTGGCACGACCTTCACGCTCATATTTCTCATAAAG 976 Query 131568 TT--TCAAAGTTTTGGCC--AAACGAACTGTCCAAATTGGGACATTCGCTGGGACACATT 131623 || || || | || || |||| ||| | ||| || | | || ||||| Sbjct 975 TTGCTCGAATTCTTCACCCCAAACTTCATGT--AGTCCGGGGCACTTGTGTGGGCACATG 918 Query 131624 AGCGACCACACGCCGTTCTGT-TCAACTCGCTTCATAAACAAATCCGGCACCCATAACGC 131682 || ||||| |||| | ||| || || || ||||| || || || || | ||||| || Sbjct 917 AGTGACCAATCGCCAT-CTGCCTCCACACGTTTCATGAATAAGTCGGGTATCCATAGAGC 859 Query 131683 GTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAA 131742 || || | ||||| || | |||||| | || || |||| ||||||| ||||| Sbjct 858 ATAAAATAAATCTCGTGCACGATACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAA 799 Query 131743 GTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTTACC 131802 || || || |||| ||||||||||| ||||| | || | |||||| || || || Sbjct 798 CTCAAATATATCCGAGTGCCAGGGTTCTAAATAGATGGCGAAGGCGCCTGGACGTTTGCC 739 Query 131803 GCCT---TGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACC 131859 |||| |||| || | || ||| ||| ||| | || |||| ||| ||| | ||||| Sbjct 738 GCCTCCCTGATCCACGTAGCGCGCCACGTTATTGAACACACGCAGCATAGGCACTAAACC 679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424773600706488