Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_027983.1
Length=167435
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 132 5e-26
>seq2789
Length=15484
Score = 132 bits (146), Expect = 5e-26
Identities = 500/766 (65%), Gaps = 25/766 (3%)
Strand=Plus/Plus
Query 41612 AATATCAGGATACATCCTTTTGCTTGCGCACTCTAGAGCAAGCTGCTTAATATCATAGTT 41671
||||||||||||||| | || ||| || || || || || || || |||||||| ||
Sbjct 3131 AATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATT 3190
Query 41672 CGGATCGTCTTTGTAAAG--ATTAACGCCTTCTTCGACGAACATAACAAGCTTAGGAAAA 41729
|||||| || | ||| ||| ||||||| | | | |||||| || |||||
Sbjct 3191 AGGATCG-CTAT-TAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAAT 3248
Query 41730 ATAGGAGTTATCCCGTCACGACCGAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGA 41789
| | ||| | | || | || || || | ||| | | |||| ||| |||
Sbjct 3249 ACTGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGA 3308
Query 41790 ATCATTCGTTCAG-TCCAGTCAGTTCCTGTACCAAATGTAATTGTTACAAAAGGTGTTTG 41848
|| | || ||| | || | | | || ||||| || || ||||| || |||||
Sbjct 3309 ATTAATCTTTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTTG 3367
Query 41849 TCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATAC 41908
||| |||| || | |||||| | ||||||||| | |||| || ||||| | ||
Sbjct 3368 TCCATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAA-AC 3426
Query 41909 AT-CTTTTTCTGTTTTAGATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTG 41967
|| ||||||| |||| | | |||| || | || | ||| | |||||||||
Sbjct 3427 ATTCTTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTG 3486
Query 41968 CATCCTCAATATGTTTTGCAT-AGGTGCGTTTAACATAAGGAG--AAAGTACTTTATCTA 42024
|| | ||| ||| | || || |||| ||||||| | ||| || | ||| |
Sbjct 3487 TTTCTTTAATTAACTTTATTTCAGAAGCTTTTA-CATAAGGGGCTAAAATAAT--ATCGA 3543
Query 42025 CATTAGCAAAAGTCGTTCCGCCGTATTGATGGGAAGCAACCTGTGCAGTAATTTGTGCCA 42084
||| || || ||||| || || ||| || || || || | ||||| ||
Sbjct 3544 TATTGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAG 3603
Query 42085 TAATTGCAGTAGCAACTCCAATTGATTTAGGAGTTTCAATCTGTGCATTACCAAGCTTAA 42144
| || || || || ||||||||| ||||||||||| | ||||| || | ||||
Sbjct 3604 TTATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAA 3663
Query 42145 ATCCGTTCTCAAGCATTCCTTTTAAATCTACTAAACAACAATTAGTAAATGGAAGAGCAG 42204
| || |||||||||||||||||||| ||||| ||||||| | ||||| | |
Sbjct 3664 AGCCACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAATG 3723
Query 42205 GGGAATAATCAATATCATGGAAATGAATAATTCCGCTTTCATGCGCTTTCATAATAAAAG 42264
| |||||||| | |||||| ||||||| || ||||||| || ||| | | | |
Sbjct 3724 GTGAATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--ACG 3779
Query 42265 AC----GGGACCAT---ATTTTTGGCAATGTGTTTAGACACAATACCGGCCATAAGGTCC 42317
| || | || |||||| ||| |||||||| | ||||| || | | ||
Sbjct 3780 TCTTTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATCT 3839
Query 42318 CGTTGAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTA 42363
| ||||||||||| |||| ||||||||||||||| || ||||
Sbjct 3840 CTTTGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 535456102105800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |