Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_027983.1 Length=167435 Score E Sequences producing significant alignments: (Bits) Value seq2789 132 5e-26 >seq2789 Length=15484 Score = 132 bits (146), Expect = 5e-26 Identities = 500/766 (65%), Gaps = 25/766 (3%) Strand=Plus/Plus Query 41612 AATATCAGGATACATCCTTTTGCTTGCGCACTCTAGAGCAAGCTGCTTAATATCATAGTT 41671 ||||||||||||||| | || ||| || || || || || || || |||||||| || Sbjct 3131 AATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATT 3190 Query 41672 CGGATCGTCTTTGTAAAG--ATTAACGCCTTCTTCGACGAACATAACAAGCTTAGGAAAA 41729 |||||| || | ||| ||| ||||||| | | | |||||| || ||||| Sbjct 3191 AGGATCG-CTAT-TAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAAT 3248 Query 41730 ATAGGAGTTATCCCGTCACGACCGAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGA 41789 | | ||| | | || | || || || | ||| | | |||| ||| ||| Sbjct 3249 ACTGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGA 3308 Query 41790 ATCATTCGTTCAG-TCCAGTCAGTTCCTGTACCAAATGTAATTGTTACAAAAGGTGTTTG 41848 || | || ||| | || | | | || ||||| || || ||||| || ||||| Sbjct 3309 ATTAATCTTTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTTG 3367 Query 41849 TCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATAC 41908 ||| |||| || | |||||| | ||||||||| | |||| || ||||| | || Sbjct 3368 TCCATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAA-AC 3426 Query 41909 AT-CTTTTTCTGTTTTAGATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTG 41967 || ||||||| |||| | | |||| || | || | ||| | ||||||||| Sbjct 3427 ATTCTTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTG 3486 Query 41968 CATCCTCAATATGTTTTGCAT-AGGTGCGTTTAACATAAGGAG--AAAGTACTTTATCTA 42024 || | ||| ||| | || || |||| ||||||| | ||| || | ||| | Sbjct 3487 TTTCTTTAATTAACTTTATTTCAGAAGCTTTTA-CATAAGGGGCTAAAATAAT--ATCGA 3543 Query 42025 CATTAGCAAAAGTCGTTCCGCCGTATTGATGGGAAGCAACCTGTGCAGTAATTTGTGCCA 42084 ||| || || ||||| || || ||| || || || || | ||||| || Sbjct 3544 TATTGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAG 3603 Query 42085 TAATTGCAGTAGCAACTCCAATTGATTTAGGAGTTTCAATCTGTGCATTACCAAGCTTAA 42144 | || || || || ||||||||| ||||||||||| | ||||| || | |||| Sbjct 3604 TTATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAA 3663 Query 42145 ATCCGTTCTCAAGCATTCCTTTTAAATCTACTAAACAACAATTAGTAAATGGAAGAGCAG 42204 | || |||||||||||||||||||| ||||| ||||||| | ||||| | | Sbjct 3664 AGCCACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAATG 3723 Query 42205 GGGAATAATCAATATCATGGAAATGAATAATTCCGCTTTCATGCGCTTTCATAATAAAAG 42264 | |||||||| | |||||| ||||||| || ||||||| || ||| | | | | Sbjct 3724 GTGAATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--ACG 3779 Query 42265 AC----GGGACCAT---ATTTTTGGCAATGTGTTTAGACACAATACCGGCCATAAGGTCC 42317 | || | || |||||| ||| |||||||| | ||||| || | | || Sbjct 3780 TCTTTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATCT 3839 Query 42318 CGTTGAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTA 42363 | ||||||||||| |||| ||||||||||||||| || |||| Sbjct 3840 CTTTGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535456102105800