Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1845 150 2e-31 seq24243 141 1e-28 >seq1845 Length=2059 Score = 150 bits (166), Expect = 2e-31 Identities = 302/445 (68%), Gaps = 2/445 (0%) Strand=Plus/Minus Query 181624 AACCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAA 181683 |||| || || || || || | ||||| || || ||||| |||| | |||| || || Sbjct 1851 AACCAGTGCCTATGCCGTCTGCACCATTGACCAGTACCATGGGTATAATTGGTATATACC 1792 Query 181684 AGTCTGGTTCAATGGAGCGTCCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAG 181743 | | |||||||| || ||||||| | ||| | || | || |||||| | | Sbjct 1791 ATTTTGGTTCAACTTTCTGTGCATCATCAACTTCGTATTCCAGCAAGGGATCATCCTGTG 1732 Query 181744 GATCAAAGATCTTGCGAGCCTCCTTGGTAAGTTTTGTGAAGATATACCTCGTTTGAGAAG 181803 | | | ||||| |||| ||| | | ||||||||| ||||| | || | | Sbjct 1731 GGTGATAGATCATGCGTGCCAATGGCGACAATTTTGTGAAAATATAACGCGCACTGGCTG 1672 Query 181804 CGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGT 181863 | ||||||||||| | | ||| || ||||||||||||| |||||| | || ||||| | Sbjct 1671 CATCTTTACCACCAGTTAAACGTGTGCCAAATTGACCACGTGGCTCCAACAGATTAATAT 1612 Query 181864 TGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCA 181922 | || || ||| | ||| | ||||| ||||| || || || | |||| |||||||| Sbjct 1611 TATTGGAGCCTACAAAGTTCTGTGCCAAATTAACAATAGTCATTTGTAAGG-ACACTTCA 1553 Query 181923 CCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCA 181982 ||||| || || || ||||| || || || | | | ||| ||||||||||||| |||| Sbjct 1552 CCGTGATGATAGGCAGACTTTTCAGCCACCGAACCAGACAATTGTGCCACCTTCACTTCA 1493 Query 181983 TCTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCA 182042 | ||| || | |||||||| | | ||| || | ||| ||| || | || Sbjct 1492 TGCTTGTCATTACGTTTGAAGCAAGTGAATAGCACCTTACGCTGACCAGGTTTAAAGCCG 1433 Query 182043 TCCGCCATATGGGCAATAGAGCGCT 182067 ||| ||||| || || ||||||| Sbjct 1432 TCCACCATAGAGGGTATGGAGCGCT 1408 >seq24243 Length=2007 Score = 141 bits (156), Expect = 1e-28 Identities = 300/445 (67%), Gaps = 2/445 (0%) Strand=Plus/Minus Query 181624 AACCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAA 181683 |||| || || || || || | ||||| || || ||||| |||| | |||| || || Sbjct 1554 AACCAGTGCCTATGCCGTCTGCACCATTGACCAGTACCATGGGTATAATTGGTATATACC 1495 Query 181684 AGTCTGGTTCAATGGAGCGTCCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAG 181743 | | |||||||| || ||||||| | ||| | || | || |||||| | | Sbjct 1494 ATTTTGGTTCAACTTTCTGTGCATCATCAACTTCGTATTCCAGCAAGGGATCATCCTGTG 1435 Query 181744 GATCAAAGATCTTGCGAGCCTCCTTGGTAAGTTTTGTGAAGATATACCTCGTTTGAGAAG 181803 | | | ||||| |||| ||| | | ||||||||| ||||| | || | | Sbjct 1434 GGTGATAGATCATGCGTGCCAATGGCGACAATTTTGTGAAAATATAACGCGCACTGGCTG 1375 Query 181804 CGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGT 181863 | ||||||||||| | | ||| || ||||||||||||| |||||| | || ||||| | Sbjct 1374 CATCTTTACCACCAGTTAAACGTGTGCCAAATTGACCACGTGGCTCCAACAGATTAATAT 1315 Query 181864 TGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCA 181922 | || || ||| | ||| | ||||| ||||| || || || | |||| |||||||| Sbjct 1314 TATTGGAGCCTACAAAGTTCTGTGCCAAATTAACAATAGTCATTTGTAAGG-ACACTTCA 1256 Query 181923 CCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCA 181982 ||||| || || || ||||| || || || | | | ||| |||||||| |||| |||| Sbjct 1255 CCGTGATGATAGGCGGACTTTTCAGCCACCGAACCAGACAATTGTGCCACTTTCACTTCA 1196 Query 181983 TCTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCA 182042 | ||| || | |||||||| | | ||| || | ||| ||| || | || Sbjct 1195 TGCTTGTCATTACGTTTGAAGCAAGTGAATAGCACCTTACGCTGGCCAGGTTTAAAGCCG 1136 Query 182043 TCCGCCATATGGGCAATAGAGCGCT 182067 ||| |||| || || ||||||| Sbjct 1135 TCCACCATGGAGGGTATGGAGCGCT 1111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627788252930400