Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq1845 150 2e-31
seq24243 141 1e-28
>seq1845
Length=2059
Score = 150 bits (166), Expect = 2e-31
Identities = 302/445 (68%), Gaps = 2/445 (0%)
Strand=Plus/Minus
Query 181624 AACCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAA 181683
|||| || || || || || | ||||| || || ||||| |||| | |||| || ||
Sbjct 1851 AACCAGTGCCTATGCCGTCTGCACCATTGACCAGTACCATGGGTATAATTGGTATATACC 1792
Query 181684 AGTCTGGTTCAATGGAGCGTCCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAG 181743
| | |||||||| || ||||||| | ||| | || | || |||||| | |
Sbjct 1791 ATTTTGGTTCAACTTTCTGTGCATCATCAACTTCGTATTCCAGCAAGGGATCATCCTGTG 1732
Query 181744 GATCAAAGATCTTGCGAGCCTCCTTGGTAAGTTTTGTGAAGATATACCTCGTTTGAGAAG 181803
| | | ||||| |||| ||| | | ||||||||| ||||| | || | |
Sbjct 1731 GGTGATAGATCATGCGTGCCAATGGCGACAATTTTGTGAAAATATAACGCGCACTGGCTG 1672
Query 181804 CGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGT 181863
| ||||||||||| | | ||| || ||||||||||||| |||||| | || ||||| |
Sbjct 1671 CATCTTTACCACCAGTTAAACGTGTGCCAAATTGACCACGTGGCTCCAACAGATTAATAT 1612
Query 181864 TGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCA 181922
| || || ||| | ||| | ||||| ||||| || || || | |||| ||||||||
Sbjct 1611 TATTGGAGCCTACAAAGTTCTGTGCCAAATTAACAATAGTCATTTGTAAGG-ACACTTCA 1553
Query 181923 CCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCA 181982
||||| || || || ||||| || || || | | | ||| ||||||||||||| ||||
Sbjct 1552 CCGTGATGATAGGCAGACTTTTCAGCCACCGAACCAGACAATTGTGCCACCTTCACTTCA 1493
Query 181983 TCTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCA 182042
| ||| || | |||||||| | | ||| || | ||| ||| || | ||
Sbjct 1492 TGCTTGTCATTACGTTTGAAGCAAGTGAATAGCACCTTACGCTGACCAGGTTTAAAGCCG 1433
Query 182043 TCCGCCATATGGGCAATAGAGCGCT 182067
||| ||||| || || |||||||
Sbjct 1432 TCCACCATAGAGGGTATGGAGCGCT 1408
>seq24243
Length=2007
Score = 141 bits (156), Expect = 1e-28
Identities = 300/445 (67%), Gaps = 2/445 (0%)
Strand=Plus/Minus
Query 181624 AACCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAA 181683
|||| || || || || || | ||||| || || ||||| |||| | |||| || ||
Sbjct 1554 AACCAGTGCCTATGCCGTCTGCACCATTGACCAGTACCATGGGTATAATTGGTATATACC 1495
Query 181684 AGTCTGGTTCAATGGAGCGTCCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAG 181743
| | |||||||| || ||||||| | ||| | || | || |||||| | |
Sbjct 1494 ATTTTGGTTCAACTTTCTGTGCATCATCAACTTCGTATTCCAGCAAGGGATCATCCTGTG 1435
Query 181744 GATCAAAGATCTTGCGAGCCTCCTTGGTAAGTTTTGTGAAGATATACCTCGTTTGAGAAG 181803
| | | ||||| |||| ||| | | ||||||||| ||||| | || | |
Sbjct 1434 GGTGATAGATCATGCGTGCCAATGGCGACAATTTTGTGAAAATATAACGCGCACTGGCTG 1375
Query 181804 CGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGT 181863
| ||||||||||| | | ||| || ||||||||||||| |||||| | || ||||| |
Sbjct 1374 CATCTTTACCACCAGTTAAACGTGTGCCAAATTGACCACGTGGCTCCAACAGATTAATAT 1315
Query 181864 TGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCA 181922
| || || ||| | ||| | ||||| ||||| || || || | |||| ||||||||
Sbjct 1314 TATTGGAGCCTACAAAGTTCTGTGCCAAATTAACAATAGTCATTTGTAAGG-ACACTTCA 1256
Query 181923 CCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCA 181982
||||| || || || ||||| || || || | | | ||| |||||||| |||| ||||
Sbjct 1255 CCGTGATGATAGGCGGACTTTTCAGCCACCGAACCAGACAATTGTGCCACTTTCACTTCA 1196
Query 181983 TCTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCA 182042
| ||| || | |||||||| | | ||| || | ||| ||| || | ||
Sbjct 1195 TGCTTGTCATTACGTTTGAAGCAAGTGAATAGCACCTTACGCTGGCCAGGTTTAAAGCCG 1136
Query 182043 TCCGCCATATGGGCAATAGAGCGCT 182067
||| |||| || || |||||||
Sbjct 1135 TCCACCATGGAGGGTATGGAGCGCT 1111
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627788252930400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |