Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1845 120 4e-22 seq24243 118 1e-21 >seq1845 Length=2059 Score = 120 bits (132), Expect = 4e-22 Identities = 250/368 (68%), Gaps = 6/368 (2%) Strand=Plus/Minus Query 178883 AACCCGTGCCGATGCCTTCGGTTCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 178942 |||| ||||| ||||| || | || || || || ||||| || | |||| ||||| Sbjct 1851 AACCAGTGCCTATGCCGTCTGCACCATTGACCAGTACCATGGGTATAATTGGTATATACC 1792 Query 178943 AGTCTGGTTCAATCGCACGCCCGTCATCATCCAAATAATTGAGCACGGGGTCGTCCCTCG 179002 | | |||||||| | | |||||| | || | |||| ||| || ||| | Sbjct 1791 ATTTTGGTTCAACTTTCTGTGCATCATCAACTTCGTATTCCAGCAAGGGATCATCCTGTG 1732 Query 179003 GATCAAAGATTTTACGAGCATCCCTGGTGAG--TTTTGTGAAGATGTACCTCGTTTGAGA 179060 | | | |||| | || || | ||| || ||||||||| || || | || | Sbjct 1731 GGTGATAGATCATGCGTGC--CAATGGCGACAATTTTGTGAAAATATAACGCGCACTGGC 1674 Query 179061 CGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGAT 179120 |||||||| ||||| | | ||| || ||||||||||||| |||||| | ||||| || Sbjct 1673 TGCATCTTTACCACCAGTTAAACGTGTGCCAAATTGACCACGTGGCTCCAACAGATTAAT 1614 Query 179121 ATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTT 179179 ||| || || || | ||| | ||||| || ||||| || || | ||| | |||| Sbjct 1613 ATTATTGGAGCCTACAAAGTTCTGTGCCAAATTAACAATAGTCATTTGTAAGG-ACACTT 1555 Query 179180 CACCGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATCT 179239 |||||||||| || || ||||| || ||||| | | | ||| || |||||||||| | Sbjct 1554 CACCGTGATGATAGGCAGACTTTTCAGCCACCGAACCAGACAATTGTGCCACCTTCACTT 1495 Query 179240 CATCCTTG 179247 ||| |||| Sbjct 1494 CATGCTTG 1487 >seq24243 Length=2007 Score = 118 bits (130), Expect = 1e-21 Identities = 297/447 (66%), Gaps = 6/447 (1%) Strand=Plus/Minus Query 178883 AACCCGTGCCGATGCCTTCGGTTCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 178942 |||| ||||| ||||| || | || || || || ||||| || | |||| ||||| Sbjct 1554 AACCAGTGCCTATGCCGTCTGCACCATTGACCAGTACCATGGGTATAATTGGTATATACC 1495 Query 178943 AGTCTGGTTCAATCGCACGCCCGTCATCATCCAAATAATTGAGCACGGGGTCGTCCCTCG 179002 | | |||||||| | | |||||| | || | |||| ||| || ||| | Sbjct 1494 ATTTTGGTTCAACTTTCTGTGCATCATCAACTTCGTATTCCAGCAAGGGATCATCCTGTG 1435 Query 179003 GATCAAAGATTTTACGAGCATCCCTGGTGAG--TTTTGTGAAGATGTACCTCGTTTGAGA 179060 | | | |||| | || || | ||| || ||||||||| || || | || | Sbjct 1434 GGTGATAGATCATGCGTGC--CAATGGCGACAATTTTGTGAAAATATAACGCGCACTGGC 1377 Query 179061 CGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGAT 179120 |||||||| ||||| | | ||| || ||||||||||||| |||||| | ||||| || Sbjct 1376 TGCATCTTTACCACCAGTTAAACGTGTGCCAAATTGACCACGTGGCTCCAACAGATTAAT 1317 Query 179121 ATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTT 179179 ||| || || || | ||| | ||||| || ||||| || || | ||| | |||| Sbjct 1316 ATTATTGGAGCCTACAAAGTTCTGTGCCAAATTAACAATAGTCATTTGTAAGG-ACACTT 1258 Query 179180 CACCGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATCT 179239 |||||||||| || || ||||| || ||||| | | | ||| || ||||| |||| | Sbjct 1257 CACCGTGATGATAGGCGGACTTTTCAGCCACCGAACCAGACAATTGTGCCACTTTCACTT 1198 Query 179240 CATCCTTGAGGTTCTTGTGGAAGCACGCATACATCACCTTTCTTTGTGAAGGCTTGAGGC 179299 ||| |||| || | |||||| | | | |||||| | || ||| || | || Sbjct 1197 CATGCTTGTCATTACGTTTGAAGCAAGTGAATAGCACCTTACGCTGGCCAGGTTTAAAGC 1138 Query 179300 CGTCGGCCATGTGCGCGATGGAACGCT 179326 |||| ||||| | ||||| |||| Sbjct 1137 CGTCCACCATGGAGGGTATGGAGCGCT 1111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618195177568440