Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq1845 120 4e-22
seq24243 118 1e-21
>seq1845
Length=2059
Score = 120 bits (132), Expect = 4e-22
Identities = 250/368 (68%), Gaps = 6/368 (2%)
Strand=Plus/Minus
Query 178883 AACCCGTGCCGATGCCTTCGGTTCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 178942
|||| ||||| ||||| || | || || || || ||||| || | |||| |||||
Sbjct 1851 AACCAGTGCCTATGCCGTCTGCACCATTGACCAGTACCATGGGTATAATTGGTATATACC 1792
Query 178943 AGTCTGGTTCAATCGCACGCCCGTCATCATCCAAATAATTGAGCACGGGGTCGTCCCTCG 179002
| | |||||||| | | |||||| | || | |||| ||| || ||| |
Sbjct 1791 ATTTTGGTTCAACTTTCTGTGCATCATCAACTTCGTATTCCAGCAAGGGATCATCCTGTG 1732
Query 179003 GATCAAAGATTTTACGAGCATCCCTGGTGAG--TTTTGTGAAGATGTACCTCGTTTGAGA 179060
| | | |||| | || || | ||| || ||||||||| || || | || |
Sbjct 1731 GGTGATAGATCATGCGTGC--CAATGGCGACAATTTTGTGAAAATATAACGCGCACTGGC 1674
Query 179061 CGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGAT 179120
|||||||| ||||| | | ||| || ||||||||||||| |||||| | ||||| ||
Sbjct 1673 TGCATCTTTACCACCAGTTAAACGTGTGCCAAATTGACCACGTGGCTCCAACAGATTAAT 1614
Query 179121 ATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTT 179179
||| || || || | ||| | ||||| || ||||| || || | ||| | ||||
Sbjct 1613 ATTATTGGAGCCTACAAAGTTCTGTGCCAAATTAACAATAGTCATTTGTAAGG-ACACTT 1555
Query 179180 CACCGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATCT 179239
|||||||||| || || ||||| || ||||| | | | ||| || |||||||||| |
Sbjct 1554 CACCGTGATGATAGGCAGACTTTTCAGCCACCGAACCAGACAATTGTGCCACCTTCACTT 1495
Query 179240 CATCCTTG 179247
||| ||||
Sbjct 1494 CATGCTTG 1487
>seq24243
Length=2007
Score = 118 bits (130), Expect = 1e-21
Identities = 297/447 (66%), Gaps = 6/447 (1%)
Strand=Plus/Minus
Query 178883 AACCCGTGCCGATGCCTTCGGTTCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 178942
|||| ||||| ||||| || | || || || || ||||| || | |||| |||||
Sbjct 1554 AACCAGTGCCTATGCCGTCTGCACCATTGACCAGTACCATGGGTATAATTGGTATATACC 1495
Query 178943 AGTCTGGTTCAATCGCACGCCCGTCATCATCCAAATAATTGAGCACGGGGTCGTCCCTCG 179002
| | |||||||| | | |||||| | || | |||| ||| || ||| |
Sbjct 1494 ATTTTGGTTCAACTTTCTGTGCATCATCAACTTCGTATTCCAGCAAGGGATCATCCTGTG 1435
Query 179003 GATCAAAGATTTTACGAGCATCCCTGGTGAG--TTTTGTGAAGATGTACCTCGTTTGAGA 179060
| | | |||| | || || | ||| || ||||||||| || || | || |
Sbjct 1434 GGTGATAGATCATGCGTGC--CAATGGCGACAATTTTGTGAAAATATAACGCGCACTGGC 1377
Query 179061 CGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGAT 179120
|||||||| ||||| | | ||| || ||||||||||||| |||||| | ||||| ||
Sbjct 1376 TGCATCTTTACCACCAGTTAAACGTGTGCCAAATTGACCACGTGGCTCCAACAGATTAAT 1317
Query 179121 ATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTT 179179
||| || || || | ||| | ||||| || ||||| || || | ||| | ||||
Sbjct 1316 ATTATTGGAGCCTACAAAGTTCTGTGCCAAATTAACAATAGTCATTTGTAAGG-ACACTT 1258
Query 179180 CACCGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATCT 179239
|||||||||| || || ||||| || ||||| | | | ||| || ||||| |||| |
Sbjct 1257 CACCGTGATGATAGGCGGACTTTTCAGCCACCGAACCAGACAATTGTGCCACTTTCACTT 1198
Query 179240 CATCCTTGAGGTTCTTGTGGAAGCACGCATACATCACCTTTCTTTGTGAAGGCTTGAGGC 179299
||| |||| || | |||||| | | | |||||| | || ||| || | ||
Sbjct 1197 CATGCTTGTCATTACGTTTGAAGCAAGTGAATAGCACCTTACGCTGGCCAGGTTTAAAGC 1138
Query 179300 CGTCGGCCATGTGCGCGATGGAACGCT 179326
|||| ||||| | ||||| ||||
Sbjct 1137 CGTCCACCATGGAGGGTATGGAGCGCT 1111
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618195177568440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |