Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4853 165 9e-36 seq2021 129 7e-25 seq12187 96.9 4e-15 seq24243 84.2 3e-11 seq1845 82.4 9e-11 >seq4853 Length=2014 Score = 165 bits (182), Expect = 9e-36 Identities = 581/890 (65%), Gaps = 32/890 (4%) Strand=Plus/Minus Query 104692 GTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 |||| || ||| | |||| ||||| ||||| || || | |||||||| | || |||| Sbjct 873 GTGCACGAGATTTATTCTATGCTCTGTGGATACCCGACTTGTTCATGAAACGTGTGGAGG 814 Query 104751 -AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTG 104809 ||| |||| ||||||| ||| | || ||| ||||| || || || || | | Sbjct 813 CAGA-TGGCGATTGGTCACTCATGTGCCCACACAAGTGCCCCGGACTACATGAAGTTTGG 755 Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACG 104869 ||||| || || || ||||| || || ||| |||||||| || | | || Sbjct 754 GGTGAAGAATTCGAGCAACTTTATGAGAAATATGAGCGTGAAGGTCGTGCCAATCGCACT 695 Query 104870 GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929 || |||| ||||| || ||| | || ||||| || ||||| || ||| Sbjct 694 GTTAAAGCTCAAACCTTGTGGTTTGCCATTATAGAGGCTCAAGTGGAAACTGGCACTCCA 635 Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989 || ||||| || || || || ||||| | |||||||||||| ||||| | || ||| Sbjct 634 TATATGCTCTATAAGGATGCTTGTAATCGCAAGAGTAATCAACAGAATCTAGGCACTATC 575 Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 105049 ||| | |||| | || || ||||| | |||| | | | ||||| | ||||| Sbjct 574 AAGTGCAGCAATTTATGCACTGAAATTGTAGAATATTCGGCACCGGATGAAATTGCTGTT 515 Query 105050 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGAT 105109 ||||| | || ||||| || ||| | || ||| | ||||| ||||| | |||| Sbjct 514 TGTAATTTAGCCTCAATTGCACTCAATATGTTTGTCAACCCAGA---CAAGACTTATGAT 458 Query 105110 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGAT 105169 | | |||||||| | |||||| | |||| ||| || || | |||| | | || || Sbjct 457 TTTAAAAAACTCAAAGAAGTTGCTAAAATTGTAACACGTAATTTGAACAAAATCATAGAC 398 Query 105170 AGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226 | |||| ||||| | ||| | ||| || |||||| | || ||||| || Sbjct 397 ATCAATTACTACCCGCTGCCGGAGGCCAAGCGT---TCAAATATGCGTCATCGTCCCATA 341 Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCC 105286 ||| | || || || || |||| |||| ||| || || || | ||| ||| Sbjct 340 GGTATTGGAGTACAAGGATTCGCAGATGCATTGATACTCATGCGTTATCCATATGAAAGT 281 Query 105287 GACGAAGC---GAAG-GAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCT 105342 || ||||| ||| ||||||| | |||||||| || || ||| | | || | Sbjct 280 GAGGAAGCATTTAAGCTAAATCAA----CAAATATTTGAAACGATTTATTATGGTGCCTT 225 Query 105343 TGAGGCGAGTTCAGAGTTGGC--AGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 105400 || || || | |||||||| ||| | || ||||| |||||||| | || ||| || Sbjct 224 GGAAGCCAGCTGTGAGTTGGCTGAGAAGCTG--GGTCCCTATGAAACTTATGCGGGCTCA 167 Query 105401 CCAGCTTCA-CAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACT 105458 || | ||| |||||| | | || | |||||||||| || | ||| | || || Sbjct 166 CCTG--TCAGCAAGGGAATTTTACAGTATGATATGTGGCAA-AAAACACCTA-CTGATCT 111 Query 105459 ACG--ACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCT 105516 | | | |||| | || ||||| || | | || | ||||| | | || Sbjct 110 ATGGAATTGGGCGGAGCTGAAGGAGAAAATTGCTAAACATGGCGTGCGTAATTCTTTGCT 51 Query 105517 CATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATG 105566 ||| || |||||||| ||||||||||| ||||||||| |||| ||||||| Sbjct 50 CATTGCACCAATGCCTACAGCCTCCACTGCACAAATCATGGGCAATAATG 1 >seq2021 Length=2943 Score = 129 bits (142), Expect = 7e-25 Identities = 466/719 (65%), Gaps = 24/719 (3%) Strand=Plus/Plus Query 104692 GTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 |||| || ||| | || | ||||| ||||| || || | |||||||| | || |||| Sbjct 839 GTGCACGAGATTTATTTTATGCTCTATGGATACCCGACTTATTCATGAAACGTGTGGAGG 898 Query 104751 -AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTG 104809 ||| |||| ||||||| ||| | || ||| ||||| || || || || | | Sbjct 899 CAGA-TGGCGATTGGTCACTCATGTGCCCACACAAGTGCCCCGGACTACATGAAGTTTGG 957 Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACG 104869 ||||| || || || ||||| || || ||| |||||||| || | | || Sbjct 958 GGTGAAGAATTCGAGCAACTTTATGAGAAATATGAGCGTGAAGGTCGTGCCAATCGCACT 1017 Query 104870 GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929 || |||| ||||| || ||| | || |||| || ||||| || ||| Sbjct 1018 GTTAAAGCTCAAACCTTGTGGTTTGCCATTATAGAGGCTCAGGTGGAAACTGGCACTCCA 1077 Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989 || ||||| || || || || ||||| | |||||||||||| ||||| | || ||| Sbjct 1078 TATATGCTCTATAAGGATGCTTGTAATCGCAAGAGTAATCAACAGAATCTAGGCACTATC 1137 Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 105049 ||| | |||| | || || ||||| | |||| | | | ||||| | ||||| Sbjct 1138 AAGTGCAGCAATTTATGCACTGAAATTGTAGAATATTCGGCACCGGATGAAATTGCTGTT 1197 Query 105050 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGAT 105109 ||||| | || ||||| || ||| | || ||| | ||||| ||||| | |||| Sbjct 1198 TGTAATTTAGCCTCAATTGCACTCAATATGTTTGTCAACCCAGA---CAAGACTTATGAT 1254 Query 105110 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGAT 105169 | | |||||||| | |||||| | |||| ||| || || | |||| | | || || Sbjct 1255 TTTAAAAAACTCAAAGAAGTTGCTAAAATTGTAACACGTAATTTGAACAAAATCATAGAC 1314 Query 105170 AGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226 | |||| ||||| | ||| | ||| || |||||| | || ||||| || Sbjct 1315 ATCAATTACTACCCGCTGCCGGAGGCCAAGCGT---TCAAATATGCGTCATCGTCCCATA 1371 Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCC 105286 ||| | || || || || |||| |||| ||| || || || | ||| ||| Sbjct 1372 GGTATTGGCGTACAAGGATTCGCAGATGCATTAATACTCATGCGTTATCCATATGAAAGT 1431 Query 105287 GACGAAGC---GAAG-GAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCT 105342 || ||||| ||| ||||||| | |||||||| || || ||| | | || | Sbjct 1432 GAGGAAGCATTTAAGCTAAATCAA----CAAATATTTGAAACGATTTATTATGGTGCCTT 1487 Query 105343 TGAGGCGAGTTCAGAGTTGGC--AGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 105399 || || || | |||||||| ||| | || ||||| |||||||| | || ||| || Sbjct 1488 GGAAGCCAGCTGTGAGTTGGCTGAGAAGCTG--GGTCCCTATGAAACTTATGCGGGCTC 1544 >seq12187 Length=3570 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 || ||| | ||||| |||| | || | || | ||||| || |||||||| ||| Sbjct 1307 CTATTTAACGCCATTGAAACGCTGCCTGCTGTTAAGAAGAAGGCTGATTGGGCCATGGCC 1366 Query 94774 TGGTT-TGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 94832 ||| | | || ||| ||| |||| |||||| | | |||||||| |||||| Sbjct 1367 TGGATCTCATCGAAA-TCGGCCAATTTTGGTGAGCGTATTATAGCATTTGCAGCTGTTGA 1425 Query 94833 GGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCAT 94892 |||||| |||||| ||| ||| | |||||| ||||| ||||| || |||||||| Sbjct 1426 GGGTATTTTCTTCAGTGGCAGTTTCGCCTCTATTTTCTGGCTTAAGAAACGTGGTCTCAT 1485 Query 94893 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||| || || |||||||| ||||| || || |||||||| || Sbjct 1486 GCCTGGCCTGACATTCTCCAATGAGCTGATTTCACGTGACGAAGG 1530 >seq24243 Length=2007 Score = 84.2 bits (92), Expect = 3e-11 Identities = 170/250 (68%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 168455 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 168514 ||||| |||||||| | | ||| || ||||| ||||||| ||||| | ||||| ||| Sbjct 1375 GCATCTTTACCACCAGTTAAACGTGTGCCAAATTGACCACGTGGCTCCAACAGATTAATA 1316 Query 168515 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTG-TCCGCGAGAGAGACTTC 168573 || || || || | ||| | ||||| || ||||| || | | || || ||||| Sbjct 1315 TTATTGGAGCCTACAAAGTTCTGTGCCAAATTAACAATAGTCATTTGTAAG-GACACTTC 1257 Query 168574 ACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTC 168633 |||||| || || || ||| || || || | | | ||| || |||||||||| || Sbjct 1256 ACCGTGATGATAGGCGGACTTTTCAGCCACCGAACCAGACAATTGTGCCACTTTCACTTC 1197 Query 168634 ATCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACC 168693 || |||| ||| | |||||| | | | | ||||| || || ||| || | || Sbjct 1196 ATGCTTGTCATTACGTTTGAAGCAAGTGAATAGCACCTTACGCTGGCCAGGTTTAAAGCC 1137 Query 168694 ATCCGCCATG 168703 ||| ||||| Sbjct 1136 GTCCACCATG 1127 >seq1845 Length=2059 Score = 82.4 bits (90), Expect = 9e-11 Identities = 169/249 (68%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 168455 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 168514 ||||| |||||||| | | ||| || ||||| ||||||| ||||| | ||||| ||| Sbjct 1672 GCATCTTTACCACCAGTTAAACGTGTGCCAAATTGACCACGTGGCTCCAACAGATTAATA 1613 Query 168515 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTG-TCCGCGAGAGAGACTTC 168573 || || || || | ||| | ||||| || ||||| || | | || || ||||| Sbjct 1612 TTATTGGAGCCTACAAAGTTCTGTGCCAAATTAACAATAGTCATTTGTAAG-GACACTTC 1554 Query 168574 ACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTC 168633 |||||| || || ||| ||| || || || | | | ||| || ||||| |||| || Sbjct 1553 ACCGTGATGATAGGCAGACTTTTCAGCCACCGAACCAGACAATTGTGCCACCTTCACTTC 1494 Query 168634 ATCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACC 168693 || |||| ||| | |||||| | | | | ||||| || || ||| || | || Sbjct 1493 ATGCTTGTCATTACGTTTGAAGCAAGTGAATAGCACCTTACGCTGACCAGGTTTAAAGCC 1434 Query 168694 ATCCGCCAT 168702 ||| |||| Sbjct 1433 GTCCACCAT 1425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583034429192760