Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq4853 165 9e-36
seq2021 129 7e-25
seq12187 96.9 4e-15
seq24243 84.2 3e-11
seq1845 82.4 9e-11
>seq4853
Length=2014
Score = 165 bits (182), Expect = 9e-36
Identities = 581/890 (65%), Gaps = 32/890 (4%)
Strand=Plus/Minus
Query 104692 GTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750
|||| || ||| | |||| ||||| ||||| || || | |||||||| | || ||||
Sbjct 873 GTGCACGAGATTTATTCTATGCTCTGTGGATACCCGACTTGTTCATGAAACGTGTGGAGG 814
Query 104751 -AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTG 104809
||| |||| ||||||| ||| | || ||| ||||| || || || || | |
Sbjct 813 CAGA-TGGCGATTGGTCACTCATGTGCCCACACAAGTGCCCCGGACTACATGAAGTTTGG 755
Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACG 104869
||||| || || || ||||| || || ||| |||||||| || | | ||
Sbjct 754 GGTGAAGAATTCGAGCAACTTTATGAGAAATATGAGCGTGAAGGTCGTGCCAATCGCACT 695
Query 104870 GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929
|| |||| ||||| || ||| | || ||||| || ||||| || |||
Sbjct 694 GTTAAAGCTCAAACCTTGTGGTTTGCCATTATAGAGGCTCAAGTGGAAACTGGCACTCCA 635
Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989
|| ||||| || || || || ||||| | |||||||||||| ||||| | || |||
Sbjct 634 TATATGCTCTATAAGGATGCTTGTAATCGCAAGAGTAATCAACAGAATCTAGGCACTATC 575
Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 105049
||| | |||| | || || ||||| | |||| | | | ||||| | |||||
Sbjct 574 AAGTGCAGCAATTTATGCACTGAAATTGTAGAATATTCGGCACCGGATGAAATTGCTGTT 515
Query 105050 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGAT 105109
||||| | || ||||| || ||| | || ||| | ||||| ||||| | ||||
Sbjct 514 TGTAATTTAGCCTCAATTGCACTCAATATGTTTGTCAACCCAGA---CAAGACTTATGAT 458
Query 105110 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGAT 105169
| | |||||||| | |||||| | |||| ||| || || | |||| | | || ||
Sbjct 457 TTTAAAAAACTCAAAGAAGTTGCTAAAATTGTAACACGTAATTTGAACAAAATCATAGAC 398
Query 105170 AGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226
| |||| ||||| | ||| | ||| || |||||| | || ||||| ||
Sbjct 397 ATCAATTACTACCCGCTGCCGGAGGCCAAGCGT---TCAAATATGCGTCATCGTCCCATA 341
Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCC 105286
||| | || || || || |||| |||| ||| || || || | ||| |||
Sbjct 340 GGTATTGGAGTACAAGGATTCGCAGATGCATTGATACTCATGCGTTATCCATATGAAAGT 281
Query 105287 GACGAAGC---GAAG-GAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCT 105342
|| ||||| ||| ||||||| | |||||||| || || ||| | | || |
Sbjct 280 GAGGAAGCATTTAAGCTAAATCAA----CAAATATTTGAAACGATTTATTATGGTGCCTT 225
Query 105343 TGAGGCGAGTTCAGAGTTGGC--AGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 105400
|| || || | |||||||| ||| | || ||||| |||||||| | || ||| ||
Sbjct 224 GGAAGCCAGCTGTGAGTTGGCTGAGAAGCTG--GGTCCCTATGAAACTTATGCGGGCTCA 167
Query 105401 CCAGCTTCA-CAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACT 105458
|| | ||| |||||| | | || | |||||||||| || | ||| | || ||
Sbjct 166 CCTG--TCAGCAAGGGAATTTTACAGTATGATATGTGGCAA-AAAACACCTA-CTGATCT 111
Query 105459 ACG--ACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCT 105516
| | | |||| | || ||||| || | | || | ||||| | | ||
Sbjct 110 ATGGAATTGGGCGGAGCTGAAGGAGAAAATTGCTAAACATGGCGTGCGTAATTCTTTGCT 51
Query 105517 CATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATG 105566
||| || |||||||| ||||||||||| ||||||||| |||| |||||||
Sbjct 50 CATTGCACCAATGCCTACAGCCTCCACTGCACAAATCATGGGCAATAATG 1
>seq2021
Length=2943
Score = 129 bits (142), Expect = 7e-25
Identities = 466/719 (65%), Gaps = 24/719 (3%)
Strand=Plus/Plus
Query 104692 GTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750
|||| || ||| | || | ||||| ||||| || || | |||||||| | || ||||
Sbjct 839 GTGCACGAGATTTATTTTATGCTCTATGGATACCCGACTTATTCATGAAACGTGTGGAGG 898
Query 104751 -AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTG 104809
||| |||| ||||||| ||| | || ||| ||||| || || || || | |
Sbjct 899 CAGA-TGGCGATTGGTCACTCATGTGCCCACACAAGTGCCCCGGACTACATGAAGTTTGG 957
Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACG 104869
||||| || || || ||||| || || ||| |||||||| || | | ||
Sbjct 958 GGTGAAGAATTCGAGCAACTTTATGAGAAATATGAGCGTGAAGGTCGTGCCAATCGCACT 1017
Query 104870 GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929
|| |||| ||||| || ||| | || |||| || ||||| || |||
Sbjct 1018 GTTAAAGCTCAAACCTTGTGGTTTGCCATTATAGAGGCTCAGGTGGAAACTGGCACTCCA 1077
Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989
|| ||||| || || || || ||||| | |||||||||||| ||||| | || |||
Sbjct 1078 TATATGCTCTATAAGGATGCTTGTAATCGCAAGAGTAATCAACAGAATCTAGGCACTATC 1137
Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 105049
||| | |||| | || || ||||| | |||| | | | ||||| | |||||
Sbjct 1138 AAGTGCAGCAATTTATGCACTGAAATTGTAGAATATTCGGCACCGGATGAAATTGCTGTT 1197
Query 105050 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGAT 105109
||||| | || ||||| || ||| | || ||| | ||||| ||||| | ||||
Sbjct 1198 TGTAATTTAGCCTCAATTGCACTCAATATGTTTGTCAACCCAGA---CAAGACTTATGAT 1254
Query 105110 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGAT 105169
| | |||||||| | |||||| | |||| ||| || || | |||| | | || ||
Sbjct 1255 TTTAAAAAACTCAAAGAAGTTGCTAAAATTGTAACACGTAATTTGAACAAAATCATAGAC 1314
Query 105170 AGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226
| |||| ||||| | ||| | ||| || |||||| | || ||||| ||
Sbjct 1315 ATCAATTACTACCCGCTGCCGGAGGCCAAGCGT---TCAAATATGCGTCATCGTCCCATA 1371
Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCC 105286
||| | || || || || |||| |||| ||| || || || | ||| |||
Sbjct 1372 GGTATTGGCGTACAAGGATTCGCAGATGCATTAATACTCATGCGTTATCCATATGAAAGT 1431
Query 105287 GACGAAGC---GAAG-GAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCT 105342
|| ||||| ||| ||||||| | |||||||| || || ||| | | || |
Sbjct 1432 GAGGAAGCATTTAAGCTAAATCAA----CAAATATTTGAAACGATTTATTATGGTGCCTT 1487
Query 105343 TGAGGCGAGTTCAGAGTTGGC--AGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 105399
|| || || | |||||||| ||| | || ||||| |||||||| | || ||| ||
Sbjct 1488 GGAAGCCAGCTGTGAGTTGGCTGAGAAGCTG--GGTCCCTATGAAACTTATGCGGGCTC 1544
>seq12187
Length=3570
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/225 (70%), Gaps = 2/225 (1%)
Strand=Plus/Plus
Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773
|| ||| | ||||| |||| | || | || | ||||| || |||||||| |||
Sbjct 1307 CTATTTAACGCCATTGAAACGCTGCCTGCTGTTAAGAAGAAGGCTGATTGGGCCATGGCC 1366
Query 94774 TGGTT-TGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 94832
||| | | || ||| ||| |||| |||||| | | |||||||| ||||||
Sbjct 1367 TGGATCTCATCGAAA-TCGGCCAATTTTGGTGAGCGTATTATAGCATTTGCAGCTGTTGA 1425
Query 94833 GGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCAT 94892
|||||| |||||| ||| ||| | |||||| ||||| ||||| || ||||||||
Sbjct 1426 GGGTATTTTCTTCAGTGGCAGTTTCGCCTCTATTTTCTGGCTTAAGAAACGTGGTCTCAT 1485
Query 94893 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937
||| || || |||||||| ||||| || || |||||||| ||
Sbjct 1486 GCCTGGCCTGACATTCTCCAATGAGCTGATTTCACGTGACGAAGG 1530
>seq24243
Length=2007
Score = 84.2 bits (92), Expect = 3e-11
Identities = 170/250 (68%), Gaps = 2/250 (1%)
Strand=Plus/Minus
Query 168455 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 168514
||||| |||||||| | | ||| || ||||| ||||||| ||||| | ||||| |||
Sbjct 1375 GCATCTTTACCACCAGTTAAACGTGTGCCAAATTGACCACGTGGCTCCAACAGATTAATA 1316
Query 168515 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTG-TCCGCGAGAGAGACTTC 168573
|| || || || | ||| | ||||| || ||||| || | | || || |||||
Sbjct 1315 TTATTGGAGCCTACAAAGTTCTGTGCCAAATTAACAATAGTCATTTGTAAG-GACACTTC 1257
Query 168574 ACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTC 168633
|||||| || || || ||| || || || | | | ||| || |||||||||| ||
Sbjct 1256 ACCGTGATGATAGGCGGACTTTTCAGCCACCGAACCAGACAATTGTGCCACTTTCACTTC 1197
Query 168634 ATCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACC 168693
|| |||| ||| | |||||| | | | | ||||| || || ||| || | ||
Sbjct 1196 ATGCTTGTCATTACGTTTGAAGCAAGTGAATAGCACCTTACGCTGGCCAGGTTTAAAGCC 1137
Query 168694 ATCCGCCATG 168703
||| |||||
Sbjct 1136 GTCCACCATG 1127
>seq1845
Length=2059
Score = 82.4 bits (90), Expect = 9e-11
Identities = 169/249 (68%), Gaps = 2/249 (1%)
Strand=Plus/Minus
Query 168455 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 168514
||||| |||||||| | | ||| || ||||| ||||||| ||||| | ||||| |||
Sbjct 1672 GCATCTTTACCACCAGTTAAACGTGTGCCAAATTGACCACGTGGCTCCAACAGATTAATA 1613
Query 168515 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTG-TCCGCGAGAGAGACTTC 168573
|| || || || | ||| | ||||| || ||||| || | | || || |||||
Sbjct 1612 TTATTGGAGCCTACAAAGTTCTGTGCCAAATTAACAATAGTCATTTGTAAG-GACACTTC 1554
Query 168574 ACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTC 168633
|||||| || || ||| ||| || || || | | | ||| || ||||| |||| ||
Sbjct 1553 ACCGTGATGATAGGCAGACTTTTCAGCCACCGAACCAGACAATTGTGCCACCTTCACTTC 1494
Query 168634 ATCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACC 168693
|| |||| ||| | |||||| | | | | ||||| || || ||| || | ||
Sbjct 1493 ATGCTTGTCATTACGTTTGAAGCAAGTGAATAGCACCTTACGCTGACCAGGTTTAAAGCC 1434
Query 168694 ATCCGCCAT 168702
||| ||||
Sbjct 1433 GTCCACCAT 1425
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583034429192760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |