Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq1470 266 1e-65
seq1985 147 7e-30
seq24243 107 6e-18
seq13975 104 7e-17
seq1845 102 2e-16
>seq1470
Length=5781
Score = 266 bits (294), Expect = 1e-65
Identities = 939/1447 (65%), Gaps = 65/1447 (4%)
Strand=Plus/Plus
Query 349225 TTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAATTGCAAATGATCAAGG 349284
|| || | |||||| ||||| | || | ||||| ||||| ||||| || ||||||||
Sbjct 2328 TTTTTTTAGTGTTGGTGTTTATAAGAACGGACGTGTTGAAATTATTGCCAACGATCAAGG 2387
Query 349285 TAACAGAACAACGCCATCATACGTTGCATTTACC---GAAACTGAGCGTATGATTGGTGA 349341
|||| | | || || ||||| |||| || || ||| ||| ||| ||||||||||
Sbjct 2388 TAACCGTATCACTCCCTCATATGTTGGTTTCACAAGTGAAGGTGAACGTTTGATTGGTGA 2447
Query 349342 TTCTGCAAAAAATCAAGCTG-CTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGAC 349400
| | || |||||||| | || | | |||||| | ||||| || || ||||| |||||
Sbjct 2448 TGCCGCCAAAAATCA-GTTGACCACAAATCCAGAGAATACAGTATTCGATGCCAAGCGTT 2506
Query 349401 TTATTGGTAGAAGTTTTTCTGA--CAAATCTACACAATCTGATCTAAAACATTTTCCTTT 349458
| |||||| | | ||| | ||| | || || ||| || | || || ||
Sbjct 2507 TGATTGGTCGTGAATGGAATGATGCCAATGTGCAACATGACATCAAATTC--TTCCCCTT 2564
Query 349459 TACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAA---TATAAAGGTGA 349515
| || | || |||||| | | ||| ||| | ||| || | | | |||
Sbjct 2565 CAAAGT-GATCGAAAAGAACTCCA--AGCCACACATTCAAGTTCAAACTTCTCAGGGT-- 2619
Query 349516 ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAAT 349575
|| ||| ||| ||| |||||||| || | |||||||| | |||||||||||| |
Sbjct 2620 ACCAAAGTG-TTTGCACCTGAAGAAATCTCCGCCATGGTTTTGGGTAAAATGAAGGACAC 2678
Query 349576 TGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTT 349635
|||||||| || || || | | || || ||||||| | || ||||| ||||| ||
Sbjct 2679 CGCTGAAGCCTACTTGGGCAAGAAGGTCACCAATGCTGTGGTCACAGTACCCGCCTACTT 2738
Query 349636 TAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCT 349695
||| ||||| || ||| || || ||||| |||||| ||||| || | |||||| |
Sbjct 2739 TAACGATGCTCAACGTCAAGCCACCAAAGACGCTGGCGTTATTGCTGGTCTTAATGTTAT 2798
Query 349696 AAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAA-AATGAGTG 349754
| || |||||||| ||||| ||||| || || || || || | || || || ||| |
Sbjct 2799 GCGTATCATTAATGAGCCCACCGCTGCTGCCATAGCCTACGGTTTGGACAAGAAGGAGGG 2858
Query 349755 ACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTAC 349814
||||| ||| | | | || ||||| |||||||||||||||||||| |||||
Sbjct 2859 ----TGAAAAGAATGTGTTGGTATTCGATTTGGGTGGTGGTACTTTTGATGTGTCACTCT 2914
Query 349815 TAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTG 349874
| || |||| | || | || || || || || |||||||| ||| | ||||
Sbjct 2915 TGACCATTGACAACGGTGTATTCGAGGTGGTGGCCACCAACGGTGATACTCATTTGGGTG 2974
Query 349875 GAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTA 349934
| |||||||| ||| | ||| || | ||||| ||||| | ||| |||
Sbjct 2975 GTGAAGATTTCGATCAACGTGTCATGGATCATTTCATTAAATTGTACAAG----AAGAAG 3030
Query 349935 AA----ATTGATATTGG---AGATAATC-----CTAGAGCAA-TGCGTCGCCTAAGAACT 349981
|| | |||||| | || || | || || || ||||||| ||| |
Sbjct 3031 AAGGGCAAGGATATTCGCAAGGACAACCGTGCTGTACAGAAATTGCGTCG----TGAAGT 3086
Query 349982 GCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGAT 350041
|| ||| || |||||| |||| || | || ||| |||||||| ||
Sbjct 3087 ---TGAGAA--AGCCAAGCGTGCCTTGTCTGGTGCTCATCAAGTGCGCATTGAAATCGAA 3141
Query 350042 TC--TCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAAT 350099
|| |||| ||| || | || || | | | | |||||||| ||||||||||
Sbjct 3142 TCATTCTT--TGAAGGTGATGACTTTGCTGAAACCTTGACACGTGCCAAATTTGAAGAAT 3199
Query 350100 TATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAA 350159
| ||||| | || | | || || | |||||| ||||||| || |||||||
Sbjct 3200 TGAACATGGACTTGTTCCGTTCCACTTTGAAACCTGTGCAAAAAGTCTTGGAAGATGCTG 3259
Query 350160 AAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAA 350219
| ||| |||||| | | | ||| | || | ||||||||||| ||||||||||| |
Sbjct 3260 ACATGAGCAAAAAGGATGTACACGAAATTGTGCTGGTTGGTGGTTCAACACGTATTCCCA 3319
Query 350220 AAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATC 350279
|||| ||||| || | || || ||| ||||| ||||| ||| | || || |
Sbjct 3320 AAGTACAACAATTGGTTAAGGAATTCTTTGGAGGCAAGGAACCATCTCGTGGTATCAACC 3379
Query 350280 CAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAATAAGA 350339
| ||||||||||| || |||||||| ||||| || || | | || ||||| | ||
Sbjct 3380 CTGATGAAGCTGTGGCCTATGGTGCCGCTGTACAAGCTGGTGTATTGTCTGGTGAACAG- 3438
Query 350340 GTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATTAGAAA 350399
| | ||||| | | | | ||||| | ||| | | | || | ||||
Sbjct 3439 -----GATACTGATGCCATTGTCTTGTTGGATGTCAACCCATTGACTATGGGTATTGAAA 3493
Query 350400 CTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAAAAGT 350459
|| |||| || ||||| | ||||| | || | | | | || || || || |
Sbjct 3494 CTGTGGGTGGTGTGATGACCAAATTGATTCCACGTAACACTGTTATTCCCACTAAGAAAT 3553
Query 350460 CCCAAACTTTTTCTACATTTGCAGATAATCAGC---CAGCGGTAACAATTCAAGTATTTG 350516
| |||| ||| ||||| ||| | | |||| || | || || |||||||||| ||
Sbjct 3554 CACAAATTTTCTCTAC---TGCCTCTGACCAGCAAACAACTGTCACCATTCAAGTATATG 3610
Query 350517 AAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAGTGAAA 350576
||||||||||| | || |||||||| | | || ||||| | | || |
Sbjct 3611 AAGGTGAACGTCCAATGACCAAAGATAACCACTTGTTGGGTAAATTTGATTTGACTGGCA 3670
Query 350577 TTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAATG 350636
|||||||| || | || |||| || ||||| || || || || || ||| | || |
Sbjct 3671 TTCCACCAGCACCACGTGGTATTCCACAAATTGAGGTATCCTTTGAGATCGATGCTAACG 3730
Query 350637 GTATTTT 350643
|||||||
Sbjct 3731 GTATTTT 3737
Score = 174 bits (192), Expect = 5e-38
Identities = 417/627 (67%), Gaps = 8/627 (1%)
Strand=Plus/Minus
Query 182913 GCGCTAACATTTAAAATACCATTAGAGTCAACATCAAATGATACTTCAATCTGTGGAACA 182972
||||| || | |||||||| |||| || | ||||| ||||| ||||| ||||||| |
Sbjct 3749 GCGCTCACTTGCAAAATACCGTTAGCATCGATCTCAAAGGATACCTCAATTTGTGGAATA 3690
Query 182973 CCTCGTGGCATTGGTGGAATTCCAGTTAAAGTAAATTCACCTAATTTATTATTATCTTTA 183032
|| ||||| ||||||||| ||||| ||| ||||| ||| || | ||||||||
Sbjct 3689 CCACGTGGTGCTGGTGGAATGCCAGTCAAATCAAATTTACCCAACAAGTGGTTATCTTTG 3630
Query 183033 GTTCTTGCTCTCTCGCCTTCATATACTTGAATAGTAACTGCTGGCTGATTATCACTATAA 183092
|| ||| | || ||||||||||||||||| || || | || || | ||| |
Sbjct 3629 GTCATTGGACGTTCACCTTCATATACTTGAATGGTGACAGTTGTTTGCTGGTCAGAGGCA 3570
Query 183093 GTAGAAAAAACTTGCTTTTTATTAATAGGAATAGTTGAATTTCGCGGAA-CAATTACAGT 183151
||||| |||| ||| ||| ||| | |||||| | || || |||| ||||| ||
Sbjct 3569 GTAGAGAAAATTTGTGATTTCTTAGTGGGAATAACAGTGTTACGTGGAATCAATTTG-GT 3511
Query 183152 CATTACTTCTCTGGCAGTTTCTAATCCTAATGATAATGGTGCTACATCTAGTAATAATAA 183211
||| || | | ||||||| | || | | ||||| ||||| | || | |
Sbjct 3510 CATCACACCACCCACAGTTTCAATACCCATAGTCAATGGGTTGACATCCAACAAGAC--A 3453
Query 183212 ATCTGATGTTTTATCTGATTTAATATCACTTAAAATTGCAGCTTGAACAGCTGCACCATA 183271
|| || | ||| | | || || | ||||||| ||||| ||||||||
Sbjct 3452 ATGGCATCAGTATCCTGTTC----ACCAGACAATACACCAGCTTGTACAGCGGCACCATA 3397
Query 183272 TGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATTCTTTGCCATTAAAAAATTCTGA 183331
|| ||||||||||| ||||| || ||||||| ||| ||||| ||| |||||
Sbjct 3396 GGCCACAGCTTCATCAGGGTTGATACCACGAGATGGTTCCTTGCCTCCAAAGAATTCCTT 3337
Query 183332 AAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATACTACTTCATCGAT 183391
|| || |||||| | ||| ||||| | ||||||||||| || | || | ||| | |
Sbjct 3336 AACCAATTGTTGTACTTTGGGAATACGTGTTGAACCACCAACCAGCACAATTTCGTGTAC 3277
Query 183392 ATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGTCCATAGTTTTTCT 183451
|| |||| || || | | ||||| || ||||||| ||||| | || ||| |
Sbjct 3276 ATCCTTTTTGCTCATGTCAGCATCTTCCAAGACTTTTTGCACAGGTTTCAAAGTGGAACG 3217
Query 183452 AAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATGaaaaaaaGTCAAT 183511
|| || || || || ||||| ||| | || | || || | | | |||||||
Sbjct 3216 GAACAAGTCCATGTTCAATTCTTCAAATTTGGCACGTGTCAAGGTTTCAGCAAAGTCATC 3157
Query 183512 ACCATTATATAAGGAATCAATTTCAAT 183538
||| | | | || || || ||||||||
Sbjct 3156 ACCTTCAAAGAATGATTCGATTTCAAT 3130
>seq1985
Length=11301
Score = 147 bits (162), Expect = 7e-30
Identities = 143/184 (78%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 349554 TTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTG 349613
||||| |||||||||| || ||| |||| |||||||| || | ||| || || ||||
Sbjct 1499 TTTTAATTAAAATGAAAAAAGCTGCGGAAGATTATTTAGGCGAGAAAGTTACAGACGCTG 1558
Query 349614 TTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCA 349673
|||| ||||| ||||| |||||||| ||||| || | ||||||||||| ||||| |
Sbjct 1559 TTATAACTGTTCCAGCTTATTTTAACGATGCTCAAAGGCAAGCAACAAAAGACGCTGGTA 1618
Query 349674 GCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCAT 349733
||||| || | ||||| | |||||| || |||||||| |||||||| ||| ||||||
Sbjct 1619 AAATTGCAGGTCTTAATGTGCAAAGAATTATAAATGAACCAACTGCTGCTGCACTTGCAT 1678
Query 349734 ATGG 349737
|||
Sbjct 1679 TTGG 1682
Score = 104 bits (114), Expect = 7e-17
Identities = 252/379 (66%), Gaps = 16/379 (4%)
Strand=Plus/Minus
Query 182918 AACATTTAAAATACCATTAGAGTCAACATCAAATGATACTTCAATCTGTGGAACACCTCG 182977
|||| | | ||||||||| ||||| |||||||| |||||||| || || |||||
Sbjct 2674 AACACTGATAATACCATTCTGGTCAATATCAAATGTAACTTCAATTTGAGGTGTCCCTCG 2615
Query 182978 TGGCATTGGTGGAATTCCAGTTAAAGTAAATTCACCTAATTTATTATTATCTTTAGTTCT 183037
||| || || || |||| ||||||||||||| |||||||| || |
Sbjct 2614 TGGAGCAGGGTCTATACCTTCTAAATTAAATTCACCTAACAATTTATTATCAGAAGAACG 2555
Query 183038 TGCTCTCTCGCCTTCATATACTTGAATAGTAACTGCTGGCTGATTATCACTATAAGTAGA 183097
| ||| ||||||| |||||| ||| |||| ||||||||| | |||||
Sbjct 2554 TTTTCTTTCGCCTTGGAATACTTTAATTCCTACTGAATTTTGATTATCATCAGCCGTAGA 2495
Query 183098 AAAAACTTGCTTTTTATTAATAGGAATAGTTGAATTTCGCGGAACAATTACAGTCATTAC 183157
|| ||||||| || | | ||||| || | |||| || | || |||||||||||
Sbjct 2494 GAACACTTGCTGATTTCTTGTTGGAATTGTCGTATTTTTAGGTATAAGAACAGTCATTAC 2435
Query 183158 TTCTCTGGCAGTTTCTAATCCTAAT-GATAATGGTGCTACATCTAGTAATAATAA-ATCT 183215
| | ||||| ||| | ||| ||||| |||| |||||| || || || || ||||
Sbjct 2434 ACCACCCATTGTTTC-AATACCAATAGATAAAGGTGTTACATCAAG-AAGAAGAAGATCT 2377
Query 183216 GATGTTTTATCTGATTTAATATCACTTAAAATTGCAGCTTGAACAGCTGCACCATATGCA 183275
||||| | ||| |||| | || | |||| | |||||||| |||
Sbjct 2376 TTTGTTTCACCTG------------TTAATACTGAACCTTGTATTGCTGCACCTAATGAC 2329
Query 183276 ACAGCTTCATCTGGGTTAA 183294
|| |||||||| || ||||
Sbjct 2328 ACTGCTTCATCAGGATTAA 2310
>seq24243
Length=2007
Score = 107 bits (118), Expect = 6e-18
Identities = 240/358 (67%), Gaps = 2/358 (1%)
Strand=Plus/Plus
Query 67896 TGAAATTAAAGTTGCACAATTTAGTGGTTATGTTTCAGAACATTCAGGCTATCATCACGG 67955
|||| | ||||| |||||||| ||||| || | ||| | || | ||||||||||||
Sbjct 1196 TGAAGTGAAAGTGGCACAATTGTCTGGTTCGGTGGCTGAAAAGTCCGCCTATCATCACGG 1255
Query 67956 TGAAGCTAGTTTA-AATTCATCAATTGTAGGTTTAGCTCAGAATTTTGTTGGATCAAATA 68014
||||| ||| || | | | ||||| ||| || ||||| ||||| || || ||||
Sbjct 1256 TGAAGTGTCCTTACAAATGA-CTATTGTTAATTTGGCACAGAACTTTGTAGGCTCCAATA 1314
Query 68015 ATATTAATTTACTAGAACCAAAAGGTCAATTTGGAACTAGATTACTTGGAGGAAAAGATG 68074
|||||||| | | || ||| ||||||||||| || | ||| ||| || |||||||
Sbjct 1315 ATATTAATCTGTTGGAGCCACGTGGTCAATTTGGCACACGTTTAACTGGTGGTAAAGATG 1374
Query 68075 CTGCATCTGAAAGATATATATTTACACATCTAAATACTTTAACTAGACTTATCTTTAGAC 68134
| || || | ||||| || ||| | | | || | | | |||| | |
Sbjct 1375 CAGCCAGTGCGCGTTATATTTTCACAAAATTGTCGCCATTGGCACGCATGATCTATCACC 1434
Query 68135 AAGAAGATGATAATATTCTTGAATATTTAGAAGATGATGGTGATAAAGTTGAGCCAATCT 68194
| | |||||| | || ||||| || ||||||| | |||||||| |||| |
Sbjct 1435 CACAGGATGATCCCTTGCTGGAATACGAAGTTGATGATGCACAGAAAGTTGAACCAAAAT 1494
Query 68195 ATTATGTTCCTATTATTCCTATGATTTTAGTAAATGGTTCAAAAGGGATTGGCACTGG 68252
||| | || ||||| || ||| | | || |||||| || | || || ||||||||
Sbjct 1495 GGTATATACCAATTATACCCATGGTACTGGTCAATGGTGCAGACGGCATAGGCACTGG 1552
>seq13975
Length=1469
Score = 104 bits (114), Expect = 7e-17
Identities = 137/189 (72%), Gaps = 1/189 (1%)
Strand=Plus/Plus
Query 349190 aaaaaaaCC-GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCA 349248
||||| || || || ||||| ||||| || || || || || ||||||| ||| | ||
Sbjct 1273 AAAAATGCCTGCAATTGGAATTGATTTGGGAACCACATACTCCTGTGTTGGTGTCTTTCA 1332
Query 349249 AAATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGT 349308
| ||| |||||||||||||| || || ||||| || | ||||| || || ||
Sbjct 1333 ACATGGAAAAGTAGAAATAATTGCCAACGACCAAGGAAATCGTACAACACCCAGTTATGT 1392
Query 349309 TGCATTTACCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAA 349368
||||| || || | |||||| ||||||||||| | || |||||||||| || ||
Sbjct 1393 GGCATTCACAGATTCAGAGCGTTTGATTGGTGATGCCGCCAAAAATCAAGTCGCCATGAA 1452
Query 349369 TCCAAAAAA 349377
||| |||||
Sbjct 1453 TCCCAAAAA 1461
>seq1845
Length=2059
Score = 102 bits (112), Expect = 2e-16
Identities = 239/358 (67%), Gaps = 2/358 (1%)
Strand=Plus/Plus
Query 67896 TGAAATTAAAGTTGCACAATTTAGTGGTTATGTTTCAGAACATTCAGGCTATCATCACGG 67955
|||| | || || |||||||| ||||| || | ||| | || | ||||||||||||
Sbjct 1493 TGAAGTGAAGGTGGCACAATTGTCTGGTTCGGTGGCTGAAAAGTCTGCCTATCATCACGG 1552
Query 67956 TGAAGCTAGTTTA-AATTCATCAATTGTAGGTTTAGCTCAGAATTTTGTTGGATCAAATA 68014
||||| ||| || | | | ||||| ||| || ||||| ||||| || || ||||
Sbjct 1553 TGAAGTGTCCTTACAAATGA-CTATTGTTAATTTGGCACAGAACTTTGTAGGCTCCAATA 1611
Query 68015 ATATTAATTTACTAGAACCAAAAGGTCAATTTGGAACTAGATTACTTGGAGGAAAAGATG 68074
|||||||| | | || ||| ||||||||||| || | ||| ||| || |||||||
Sbjct 1612 ATATTAATCTGTTGGAGCCACGTGGTCAATTTGGCACACGTTTAACTGGTGGTAAAGATG 1671
Query 68075 CTGCATCTGAAAGATATATATTTACACATCTAAATACTTTAACTAGACTTATCTTTAGAC 68134
| || || | ||||| || ||| | | | || | | | |||| | |
Sbjct 1672 CAGCCAGTGCGCGTTATATTTTCACAAAATTGTCGCCATTGGCACGCATGATCTATCACC 1731
Query 68135 AAGAAGATGATAATATTCTTGAATATTTAGAAGATGATGGTGATAAAGTTGAGCCAATCT 68194
| | |||||| | || ||||| || ||||||| | |||||||| |||| |
Sbjct 1732 CACAGGATGATCCCTTGCTGGAATACGAAGTTGATGATGCACAGAAAGTTGAACCAAAAT 1791
Query 68195 ATTATGTTCCTATTATTCCTATGATTTTAGTAAATGGTTCAAAAGGGATTGGCACTGG 68252
||| | || ||||| || ||| | | || |||||| || | || || ||||||||
Sbjct 1792 GGTATATACCAATTATACCCATGGTACTGGTCAATGGTGCAGACGGCATAGGCACTGG 1849
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1514651608597347
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