Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1470 266 1e-65 seq1985 147 7e-30 seq24243 107 6e-18 seq13975 104 7e-17 seq1845 102 2e-16 >seq1470 Length=5781 Score = 266 bits (294), Expect = 1e-65 Identities = 939/1447 (65%), Gaps = 65/1447 (4%) Strand=Plus/Plus Query 349225 TTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAATTGCAAATGATCAAGG 349284 || || | |||||| ||||| | || | ||||| ||||| ||||| || |||||||| Sbjct 2328 TTTTTTTAGTGTTGGTGTTTATAAGAACGGACGTGTTGAAATTATTGCCAACGATCAAGG 2387 Query 349285 TAACAGAACAACGCCATCATACGTTGCATTTACC---GAAACTGAGCGTATGATTGGTGA 349341 |||| | | || || ||||| |||| || || ||| ||| ||| |||||||||| Sbjct 2388 TAACCGTATCACTCCCTCATATGTTGGTTTCACAAGTGAAGGTGAACGTTTGATTGGTGA 2447 Query 349342 TTCTGCAAAAAATCAAGCTG-CTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGAC 349400 | | || |||||||| | || | | |||||| | ||||| || || ||||| ||||| Sbjct 2448 TGCCGCCAAAAATCA-GTTGACCACAAATCCAGAGAATACAGTATTCGATGCCAAGCGTT 2506 Query 349401 TTATTGGTAGAAGTTTTTCTGA--CAAATCTACACAATCTGATCTAAAACATTTTCCTTT 349458 | |||||| | | ||| | ||| | || || ||| || | || || || Sbjct 2507 TGATTGGTCGTGAATGGAATGATGCCAATGTGCAACATGACATCAAATTC--TTCCCCTT 2564 Query 349459 TACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAA---TATAAAGGTGA 349515 | || | || |||||| | | ||| ||| | ||| || | | | ||| Sbjct 2565 CAAAGT-GATCGAAAAGAACTCCA--AGCCACACATTCAAGTTCAAACTTCTCAGGGT-- 2619 Query 349516 ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAAT 349575 || ||| ||| ||| |||||||| || | |||||||| | |||||||||||| | Sbjct 2620 ACCAAAGTG-TTTGCACCTGAAGAAATCTCCGCCATGGTTTTGGGTAAAATGAAGGACAC 2678 Query 349576 TGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTT 349635 |||||||| || || || | | || || ||||||| | || ||||| ||||| || Sbjct 2679 CGCTGAAGCCTACTTGGGCAAGAAGGTCACCAATGCTGTGGTCACAGTACCCGCCTACTT 2738 Query 349636 TAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCT 349695 ||| ||||| || ||| || || ||||| |||||| ||||| || | |||||| | Sbjct 2739 TAACGATGCTCAACGTCAAGCCACCAAAGACGCTGGCGTTATTGCTGGTCTTAATGTTAT 2798 Query 349696 AAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAA-AATGAGTG 349754 | || |||||||| ||||| ||||| || || || || || | || || || ||| | Sbjct 2799 GCGTATCATTAATGAGCCCACCGCTGCTGCCATAGCCTACGGTTTGGACAAGAAGGAGGG 2858 Query 349755 ACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTAC 349814 ||||| ||| | | | || ||||| |||||||||||||||||||| ||||| Sbjct 2859 ----TGAAAAGAATGTGTTGGTATTCGATTTGGGTGGTGGTACTTTTGATGTGTCACTCT 2914 Query 349815 TAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTG 349874 | || |||| | || | || || || || || |||||||| ||| | |||| Sbjct 2915 TGACCATTGACAACGGTGTATTCGAGGTGGTGGCCACCAACGGTGATACTCATTTGGGTG 2974 Query 349875 GAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTA 349934 | |||||||| ||| | ||| || | ||||| ||||| | ||| ||| Sbjct 2975 GTGAAGATTTCGATCAACGTGTCATGGATCATTTCATTAAATTGTACAAG----AAGAAG 3030 Query 349935 AA----ATTGATATTGG---AGATAATC-----CTAGAGCAA-TGCGTCGCCTAAGAACT 349981 || | |||||| | || || | || || || ||||||| ||| | Sbjct 3031 AAGGGCAAGGATATTCGCAAGGACAACCGTGCTGTACAGAAATTGCGTCG----TGAAGT 3086 Query 349982 GCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGAT 350041 || ||| || |||||| |||| || | || ||| |||||||| || Sbjct 3087 ---TGAGAA--AGCCAAGCGTGCCTTGTCTGGTGCTCATCAAGTGCGCATTGAAATCGAA 3141 Query 350042 TC--TCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAAT 350099 || |||| ||| || | || || | | | | |||||||| |||||||||| Sbjct 3142 TCATTCTT--TGAAGGTGATGACTTTGCTGAAACCTTGACACGTGCCAAATTTGAAGAAT 3199 Query 350100 TATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAA 350159 | ||||| | || | | || || | |||||| ||||||| || ||||||| Sbjct 3200 TGAACATGGACTTGTTCCGTTCCACTTTGAAACCTGTGCAAAAAGTCTTGGAAGATGCTG 3259 Query 350160 AAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAA 350219 | ||| |||||| | | | ||| | || | ||||||||||| ||||||||||| | Sbjct 3260 ACATGAGCAAAAAGGATGTACACGAAATTGTGCTGGTTGGTGGTTCAACACGTATTCCCA 3319 Query 350220 AAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATC 350279 |||| ||||| || | || || ||| ||||| ||||| ||| | || || | Sbjct 3320 AAGTACAACAATTGGTTAAGGAATTCTTTGGAGGCAAGGAACCATCTCGTGGTATCAACC 3379 Query 350280 CAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAATAAGA 350339 | ||||||||||| || |||||||| ||||| || || | | || ||||| | || Sbjct 3380 CTGATGAAGCTGTGGCCTATGGTGCCGCTGTACAAGCTGGTGTATTGTCTGGTGAACAG- 3438 Query 350340 GTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATTAGAAA 350399 | | ||||| | | | | ||||| | ||| | | | || | |||| Sbjct 3439 -----GATACTGATGCCATTGTCTTGTTGGATGTCAACCCATTGACTATGGGTATTGAAA 3493 Query 350400 CTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAAAAGT 350459 || |||| || ||||| | ||||| | || | | | | || || || || | Sbjct 3494 CTGTGGGTGGTGTGATGACCAAATTGATTCCACGTAACACTGTTATTCCCACTAAGAAAT 3553 Query 350460 CCCAAACTTTTTCTACATTTGCAGATAATCAGC---CAGCGGTAACAATTCAAGTATTTG 350516 | |||| ||| ||||| ||| | | |||| || | || || |||||||||| || Sbjct 3554 CACAAATTTTCTCTAC---TGCCTCTGACCAGCAAACAACTGTCACCATTCAAGTATATG 3610 Query 350517 AAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAGTGAAA 350576 ||||||||||| | || |||||||| | | || ||||| | | || | Sbjct 3611 AAGGTGAACGTCCAATGACCAAAGATAACCACTTGTTGGGTAAATTTGATTTGACTGGCA 3670 Query 350577 TTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAATG 350636 |||||||| || | || |||| || ||||| || || || || || ||| | || | Sbjct 3671 TTCCACCAGCACCACGTGGTATTCCACAAATTGAGGTATCCTTTGAGATCGATGCTAACG 3730 Query 350637 GTATTTT 350643 ||||||| Sbjct 3731 GTATTTT 3737 Score = 174 bits (192), Expect = 5e-38 Identities = 417/627 (67%), Gaps = 8/627 (1%) Strand=Plus/Minus Query 182913 GCGCTAACATTTAAAATACCATTAGAGTCAACATCAAATGATACTTCAATCTGTGGAACA 182972 ||||| || | |||||||| |||| || | ||||| ||||| ||||| ||||||| | Sbjct 3749 GCGCTCACTTGCAAAATACCGTTAGCATCGATCTCAAAGGATACCTCAATTTGTGGAATA 3690 Query 182973 CCTCGTGGCATTGGTGGAATTCCAGTTAAAGTAAATTCACCTAATTTATTATTATCTTTA 183032 || ||||| ||||||||| ||||| ||| ||||| ||| || | |||||||| Sbjct 3689 CCACGTGGTGCTGGTGGAATGCCAGTCAAATCAAATTTACCCAACAAGTGGTTATCTTTG 3630 Query 183033 GTTCTTGCTCTCTCGCCTTCATATACTTGAATAGTAACTGCTGGCTGATTATCACTATAA 183092 || ||| | || ||||||||||||||||| || || | || || | ||| | Sbjct 3629 GTCATTGGACGTTCACCTTCATATACTTGAATGGTGACAGTTGTTTGCTGGTCAGAGGCA 3570 Query 183093 GTAGAAAAAACTTGCTTTTTATTAATAGGAATAGTTGAATTTCGCGGAA-CAATTACAGT 183151 ||||| |||| ||| ||| ||| | |||||| | || || |||| ||||| || Sbjct 3569 GTAGAGAAAATTTGTGATTTCTTAGTGGGAATAACAGTGTTACGTGGAATCAATTTG-GT 3511 Query 183152 CATTACTTCTCTGGCAGTTTCTAATCCTAATGATAATGGTGCTACATCTAGTAATAATAA 183211 ||| || | | ||||||| | || | | ||||| ||||| | || | | Sbjct 3510 CATCACACCACCCACAGTTTCAATACCCATAGTCAATGGGTTGACATCCAACAAGAC--A 3453 Query 183212 ATCTGATGTTTTATCTGATTTAATATCACTTAAAATTGCAGCTTGAACAGCTGCACCATA 183271 || || | ||| | | || || | ||||||| ||||| |||||||| Sbjct 3452 ATGGCATCAGTATCCTGTTC----ACCAGACAATACACCAGCTTGTACAGCGGCACCATA 3397 Query 183272 TGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATTCTTTGCCATTAAAAAATTCTGA 183331 || ||||||||||| ||||| || ||||||| ||| ||||| ||| ||||| Sbjct 3396 GGCCACAGCTTCATCAGGGTTGATACCACGAGATGGTTCCTTGCCTCCAAAGAATTCCTT 3337 Query 183332 AAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATACTACTTCATCGAT 183391 || || |||||| | ||| ||||| | ||||||||||| || | || | ||| | | Sbjct 3336 AACCAATTGTTGTACTTTGGGAATACGTGTTGAACCACCAACCAGCACAATTTCGTGTAC 3277 Query 183392 ATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGTCCATAGTTTTTCT 183451 || |||| || || | | ||||| || ||||||| ||||| | || ||| | Sbjct 3276 ATCCTTTTTGCTCATGTCAGCATCTTCCAAGACTTTTTGCACAGGTTTCAAAGTGGAACG 3217 Query 183452 AAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATGaaaaaaaGTCAAT 183511 || || || || || ||||| ||| | || | || || | | | ||||||| Sbjct 3216 GAACAAGTCCATGTTCAATTCTTCAAATTTGGCACGTGTCAAGGTTTCAGCAAAGTCATC 3157 Query 183512 ACCATTATATAAGGAATCAATTTCAAT 183538 ||| | | | || || || |||||||| Sbjct 3156 ACCTTCAAAGAATGATTCGATTTCAAT 3130 >seq1985 Length=11301 Score = 147 bits (162), Expect = 7e-30 Identities = 143/184 (78%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 349554 TTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTG 349613 ||||| |||||||||| || ||| |||| |||||||| || | ||| || || |||| Sbjct 1499 TTTTAATTAAAATGAAAAAAGCTGCGGAAGATTATTTAGGCGAGAAAGTTACAGACGCTG 1558 Query 349614 TTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCA 349673 |||| ||||| ||||| |||||||| ||||| || | ||||||||||| ||||| | Sbjct 1559 TTATAACTGTTCCAGCTTATTTTAACGATGCTCAAAGGCAAGCAACAAAAGACGCTGGTA 1618 Query 349674 GCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCAT 349733 ||||| || | ||||| | |||||| || |||||||| |||||||| ||| |||||| Sbjct 1619 AAATTGCAGGTCTTAATGTGCAAAGAATTATAAATGAACCAACTGCTGCTGCACTTGCAT 1678 Query 349734 ATGG 349737 ||| Sbjct 1679 TTGG 1682 Score = 104 bits (114), Expect = 7e-17 Identities = 252/379 (66%), Gaps = 16/379 (4%) Strand=Plus/Minus Query 182918 AACATTTAAAATACCATTAGAGTCAACATCAAATGATACTTCAATCTGTGGAACACCTCG 182977 |||| | | ||||||||| ||||| |||||||| |||||||| || || ||||| Sbjct 2674 AACACTGATAATACCATTCTGGTCAATATCAAATGTAACTTCAATTTGAGGTGTCCCTCG 2615 Query 182978 TGGCATTGGTGGAATTCCAGTTAAAGTAAATTCACCTAATTTATTATTATCTTTAGTTCT 183037 ||| || || || |||| ||||||||||||| |||||||| || | Sbjct 2614 TGGAGCAGGGTCTATACCTTCTAAATTAAATTCACCTAACAATTTATTATCAGAAGAACG 2555 Query 183038 TGCTCTCTCGCCTTCATATACTTGAATAGTAACTGCTGGCTGATTATCACTATAAGTAGA 183097 | ||| ||||||| |||||| ||| |||| ||||||||| | ||||| Sbjct 2554 TTTTCTTTCGCCTTGGAATACTTTAATTCCTACTGAATTTTGATTATCATCAGCCGTAGA 2495 Query 183098 AAAAACTTGCTTTTTATTAATAGGAATAGTTGAATTTCGCGGAACAATTACAGTCATTAC 183157 || ||||||| || | | ||||| || | |||| || | || ||||||||||| Sbjct 2494 GAACACTTGCTGATTTCTTGTTGGAATTGTCGTATTTTTAGGTATAAGAACAGTCATTAC 2435 Query 183158 TTCTCTGGCAGTTTCTAATCCTAAT-GATAATGGTGCTACATCTAGTAATAATAA-ATCT 183215 | | ||||| ||| | ||| ||||| |||| |||||| || || || || |||| Sbjct 2434 ACCACCCATTGTTTC-AATACCAATAGATAAAGGTGTTACATCAAG-AAGAAGAAGATCT 2377 Query 183216 GATGTTTTATCTGATTTAATATCACTTAAAATTGCAGCTTGAACAGCTGCACCATATGCA 183275 ||||| | ||| |||| | || | |||| | |||||||| ||| Sbjct 2376 TTTGTTTCACCTG------------TTAATACTGAACCTTGTATTGCTGCACCTAATGAC 2329 Query 183276 ACAGCTTCATCTGGGTTAA 183294 || |||||||| || |||| Sbjct 2328 ACTGCTTCATCAGGATTAA 2310 >seq24243 Length=2007 Score = 107 bits (118), Expect = 6e-18 Identities = 240/358 (67%), Gaps = 2/358 (1%) Strand=Plus/Plus Query 67896 TGAAATTAAAGTTGCACAATTTAGTGGTTATGTTTCAGAACATTCAGGCTATCATCACGG 67955 |||| | ||||| |||||||| ||||| || | ||| | || | |||||||||||| Sbjct 1196 TGAAGTGAAAGTGGCACAATTGTCTGGTTCGGTGGCTGAAAAGTCCGCCTATCATCACGG 1255 Query 67956 TGAAGCTAGTTTA-AATTCATCAATTGTAGGTTTAGCTCAGAATTTTGTTGGATCAAATA 68014 ||||| ||| || | | | ||||| ||| || ||||| ||||| || || |||| Sbjct 1256 TGAAGTGTCCTTACAAATGA-CTATTGTTAATTTGGCACAGAACTTTGTAGGCTCCAATA 1314 Query 68015 ATATTAATTTACTAGAACCAAAAGGTCAATTTGGAACTAGATTACTTGGAGGAAAAGATG 68074 |||||||| | | || ||| ||||||||||| || | ||| ||| || ||||||| Sbjct 1315 ATATTAATCTGTTGGAGCCACGTGGTCAATTTGGCACACGTTTAACTGGTGGTAAAGATG 1374 Query 68075 CTGCATCTGAAAGATATATATTTACACATCTAAATACTTTAACTAGACTTATCTTTAGAC 68134 | || || | ||||| || ||| | | | || | | | |||| | | Sbjct 1375 CAGCCAGTGCGCGTTATATTTTCACAAAATTGTCGCCATTGGCACGCATGATCTATCACC 1434 Query 68135 AAGAAGATGATAATATTCTTGAATATTTAGAAGATGATGGTGATAAAGTTGAGCCAATCT 68194 | | |||||| | || ||||| || ||||||| | |||||||| |||| | Sbjct 1435 CACAGGATGATCCCTTGCTGGAATACGAAGTTGATGATGCACAGAAAGTTGAACCAAAAT 1494 Query 68195 ATTATGTTCCTATTATTCCTATGATTTTAGTAAATGGTTCAAAAGGGATTGGCACTGG 68252 ||| | || ||||| || ||| | | || |||||| || | || || |||||||| Sbjct 1495 GGTATATACCAATTATACCCATGGTACTGGTCAATGGTGCAGACGGCATAGGCACTGG 1552 >seq13975 Length=1469 Score = 104 bits (114), Expect = 7e-17 Identities = 137/189 (72%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 349190 aaaaaaaCC-GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCA 349248 ||||| || || || ||||| ||||| || || || || || ||||||| ||| | || Sbjct 1273 AAAAATGCCTGCAATTGGAATTGATTTGGGAACCACATACTCCTGTGTTGGTGTCTTTCA 1332 Query 349249 AAATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGT 349308 | ||| |||||||||||||| || || ||||| || | ||||| || || || Sbjct 1333 ACATGGAAAAGTAGAAATAATTGCCAACGACCAAGGAAATCGTACAACACCCAGTTATGT 1392 Query 349309 TGCATTTACCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAA 349368 ||||| || || | |||||| ||||||||||| | || |||||||||| || || Sbjct 1393 GGCATTCACAGATTCAGAGCGTTTGATTGGTGATGCCGCCAAAAATCAAGTCGCCATGAA 1452 Query 349369 TCCAAAAAA 349377 ||| ||||| Sbjct 1453 TCCCAAAAA 1461 >seq1845 Length=2059 Score = 102 bits (112), Expect = 2e-16 Identities = 239/358 (67%), Gaps = 2/358 (1%) Strand=Plus/Plus Query 67896 TGAAATTAAAGTTGCACAATTTAGTGGTTATGTTTCAGAACATTCAGGCTATCATCACGG 67955 |||| | || || |||||||| ||||| || | ||| | || | |||||||||||| Sbjct 1493 TGAAGTGAAGGTGGCACAATTGTCTGGTTCGGTGGCTGAAAAGTCTGCCTATCATCACGG 1552 Query 67956 TGAAGCTAGTTTA-AATTCATCAATTGTAGGTTTAGCTCAGAATTTTGTTGGATCAAATA 68014 ||||| ||| || | | | ||||| ||| || ||||| ||||| || || |||| Sbjct 1553 TGAAGTGTCCTTACAAATGA-CTATTGTTAATTTGGCACAGAACTTTGTAGGCTCCAATA 1611 Query 68015 ATATTAATTTACTAGAACCAAAAGGTCAATTTGGAACTAGATTACTTGGAGGAAAAGATG 68074 |||||||| | | || ||| ||||||||||| || | ||| ||| || ||||||| Sbjct 1612 ATATTAATCTGTTGGAGCCACGTGGTCAATTTGGCACACGTTTAACTGGTGGTAAAGATG 1671 Query 68075 CTGCATCTGAAAGATATATATTTACACATCTAAATACTTTAACTAGACTTATCTTTAGAC 68134 | || || | ||||| || ||| | | | || | | | |||| | | Sbjct 1672 CAGCCAGTGCGCGTTATATTTTCACAAAATTGTCGCCATTGGCACGCATGATCTATCACC 1731 Query 68135 AAGAAGATGATAATATTCTTGAATATTTAGAAGATGATGGTGATAAAGTTGAGCCAATCT 68194 | | |||||| | || ||||| || ||||||| | |||||||| |||| | Sbjct 1732 CACAGGATGATCCCTTGCTGGAATACGAAGTTGATGATGCACAGAAAGTTGAACCAAAAT 1791 Query 68195 ATTATGTTCCTATTATTCCTATGATTTTAGTAAATGGTTCAAAAGGGATTGGCACTGG 68252 ||| | || ||||| || ||| | | || |||||| || | || || |||||||| Sbjct 1792 GGTATATACCAATTATACCCATGGTACTGGTCAATGGTGCAGACGGCATAGGCACTGG 1849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514651608597347