Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2021 91.5 2e-13 >seq2021 Length=2943 Score = 91.5 bits (100), Expect = 2e-13 Identities = 195/286 (68%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 53498 GTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAG 53557 ||||||||||| || || ||||| ||| ||| || ||||| | ||||| || || || Sbjct 685 GTGCCTATGCTGCGTGTGTTCAATAACGTGGCGCGCTACGTGGATCAGGGAGGCGGCAAA 744 Query 53558 CG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCT 53616 || | ||| | | ||||||||||| | || || |||||| | || || | |||||| | Sbjct 745 CGTCCAGGCG-CCTTCGCCATCTATTTAGAACCCTGGCACTCGGATATATTTGAGTTTTT 803 Query 53617 CGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTACAGCTC 53675 || || ||| || | |||||| || ||| || || | ||| |||| Sbjct 804 GGATTTGAAGAAAAATACTGGCAAGGAAGAGTATCG-TGCACGAGATTTATTTTATGCTC 862 Query 53676 TGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGT 53735 | ||||| || ||| | |||||| || |||||| || | || |||| || |||| Sbjct 863 TATGGATACCCGACTTATTCATGAAACGTGTGGAGGCAGATGGCGATTGGTCACTCATGT 922 Query 53736 GCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTT 53781 |||| || |||||||||| || || | || | ||||| || || Sbjct 923 GCCCACACAAGTGCCCCGGACTACATGAAGTTTGGGGTGAAGAATT 968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547003618630200