Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq2021 91.5 2e-13
>seq2021
Length=2943
Score = 91.5 bits (100), Expect = 2e-13
Identities = 195/286 (68%), Gaps = 4/286 (1%)
Strand=Plus/Plus
Query 53498 GTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAG 53557
||||||||||| || || ||||| ||| ||| || ||||| | ||||| || || ||
Sbjct 685 GTGCCTATGCTGCGTGTGTTCAATAACGTGGCGCGCTACGTGGATCAGGGAGGCGGCAAA 744
Query 53558 CG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCT 53616
|| | ||| | | ||||||||||| | || || |||||| | || || | |||||| |
Sbjct 745 CGTCCAGGCG-CCTTCGCCATCTATTTAGAACCCTGGCACTCGGATATATTTGAGTTTTT 803
Query 53617 CGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTACAGCTC 53675
|| || ||| || | |||||| || ||| || || | ||| ||||
Sbjct 804 GGATTTGAAGAAAAATACTGGCAAGGAAGAGTATCG-TGCACGAGATTTATTTTATGCTC 862
Query 53676 TGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGT 53735
| ||||| || ||| | |||||| || |||||| || | || |||| || ||||
Sbjct 863 TATGGATACCCGACTTATTCATGAAACGTGTGGAGGCAGATGGCGATTGGTCACTCATGT 922
Query 53736 GCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTT 53781
|||| || |||||||||| || || | || | ||||| || ||
Sbjct 923 GCCCACACAAGTGCCCCGGACTACATGAAGTTTGGGGTGAAGAATT 968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547003618630200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |