Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq24243 96.9 4e-15 seq1845 96.9 4e-15 seq26883 89.7 6e-13 seq12187 84.2 2e-11 >seq24243 Length=2007 Score = 96.9 bits (106), Expect = 4e-15 Identities = 197/291 (68%), Gaps = 4/291 (1%) Strand=Plus/Plus Query 31961 AGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACG 32020 |||| ||||| || | ||| ||||||| | || ||| ||||| |||||| ||| | Sbjct 1111 AGCGCTCCATACCCTCCATGGTGGACGGCTTTAAACCTGGCCAGCGTAAGGTGCTATTCA 1170 Query 32021 CCTGCCTCAAGAAGAACCTGTCGAG--TGACATGAAGGTGGCGCAGCTGTCGGGCTACGT 32078 | ||| |||| || || | || ||| |||| ||||| || |||| || | || Sbjct 1171 CTTGCTTCAAACGTAA--TGACAAGCATGAAGTGAAAGTGGCACAATTGTCTGGTTCGGT 1228 Query 32079 GGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCT 32138 ||| || | | |||||||| ||||| || | ||| | || || ||||| || | Sbjct 1229 GGCTGAAAAGTCCGCCTATCATCACGGTGAAGTGTCCTTACAAATGACTATTGTTAATTT 1288 Query 32139 TGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGG 32198 || ||||||||||| || | ||||| | || | | |||||| ||| || ||||| Sbjct 1289 GGCACAGAACTTTGTAGGCTCCAATAATATTAATCTGTTGGAGCCACGTGGTCAATTTGG 1348 Query 32199 GACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 || || | | ||||| || ||||| || || | ||||| || ||||| Sbjct 1349 CACACGTTTAACTGGTGGTAAAGATGCAGCCAGTGCGCGTTATATTTTCAC 1399 >seq1845 Length=2059 Score = 96.9 bits (106), Expect = 4e-15 Identities = 197/291 (68%), Gaps = 4/291 (1%) Strand=Plus/Plus Query 31961 AGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACG 32020 |||| ||||| || ||| ||||||| | || ||| ||||| |||||| ||| | Sbjct 1408 AGCGCTCCATACCCTCTATGGTGGACGGCTTTAAACCTGGTCAGCGTAAGGTGCTATTCA 1467 Query 32021 CCTGCCTCAAGAAGAACCTGTCGAG--TGACATGAAGGTGGCGCAGCTGTCGGGCTACGT 32078 | ||| |||| || || | || ||| |||||||||| || |||| || | || Sbjct 1468 CTTGCTTCAAACGTAA--TGACAAGCATGAAGTGAAGGTGGCACAATTGTCTGGTTCGGT 1525 Query 32079 GGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCT 32138 ||| || | | |||||||| ||||| || | ||| | || || ||||| || | Sbjct 1526 GGCTGAAAAGTCTGCCTATCATCACGGTGAAGTGTCCTTACAAATGACTATTGTTAATTT 1585 Query 32139 TGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGG 32198 || ||||||||||| || | ||||| | || | | |||||| ||| || ||||| Sbjct 1586 GGCACAGAACTTTGTAGGCTCCAATAATATTAATCTGTTGGAGCCACGTGGTCAATTTGG 1645 Query 32199 GACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 || || | | ||||| || ||||| || || | ||||| || ||||| Sbjct 1646 CACACGTTTAACTGGTGGTAAAGATGCAGCCAGTGCGCGTTATATTTTCAC 1696 >seq26883 Length=1584 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 ||||| |||||||| |||||| | ||||| ||||| |||||| | ||||||| || || Sbjct 563 ATTCCCCCAGACCAACAGCGTTTGATTTTCGCTGGCAAGCAATTGGAGGATGGCCGCACA 622 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 | || || || || | |||||||| || || | ||| | || ||||||||||| ||| Sbjct 623 TTGGCCGATTACAACATTCAAAAGGAGTCTACATTGCATTTGGTGTTGCGTCTTCGTGGT 682 Query 27631 GG 27632 || Sbjct 683 GG 684 >seq12187 Length=3570 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/201 (70%), Gaps = 5/201 (2%) Strand=Plus/Plus Query 64651 CCCGCTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGATGA-ATCGTGGGTCGTCG-- 64707 || ||||||| || |||||||| |||||||| ||||| |||| ||| | Sbjct 1331 CCTGCTGTTAAGAAGAAGGCTGATTGGGCCATGGCCTGGATCTCATCGAAA-TCGGCCAA 1389 Query 64708 -TTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATT 64766 |||||| ||||| | ||| ||||| ||| || || |||||||| ||| || Sbjct 1390 TTTTGGTGAGCGTATTATAGCATTTGCAGCTGTTGAGGGTATTTTCTTCAGTGGCAGTTT 1449 Query 64767 CTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGA 64826 | |||||||||||||| || || || || || ||||| || ||| | || || || || Sbjct 1450 CGCCTCTATTTTCTGGCTTAAGAAACGTGGTCTCATGCCTGGCCTGACATTCTCCAATGA 1509 Query 64827 GCTGATCTCTCGGGACGAGGG 64847 |||||| || || ||||| || Sbjct 1510 GCTGATTTCACGTGACGAAGG 1530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570089055404880