Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_028448.1
Length=167467
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 120 3e-22
>seq2789
Length=15484
Score = 120 bits (132), Expect = 3e-22
Identities = 494/765 (65%), Gaps = 27/765 (4%)
Strand=Plus/Plus
Query 151736 AATATCAGGATACATCCTTTTGCTTGCGCACTCTAGAGCAAGCTGCTTAATATCATAGTT 151795
||||||||||||||| | || ||| || || || || || || || |||||||| ||
Sbjct 3131 AATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATT 3190
Query 151796 CGGATCGTCTTTGTAAAG--ATTAACGCCTTCTTCGACGAACATAACAAGCTTAGGGAAA 151853
|||||| || | ||| ||| ||||||| | | | |||||| || || ||
Sbjct 3191 AGGATCG-CTAT-TAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAAT 3248
Query 151854 ATAGGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGA 151913
| | ||| | || || | || || || | ||| | | |||| ||| |||
Sbjct 3249 ACTGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGA 3308
Query 151914 ATCATTCGTTCAG-TCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGTGTTTG 151972
|| | || ||| | || | | | || ||||| || || ||||| || |||||
Sbjct 3309 ATTAATCTTTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTTG 3367
Query 151973 CCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATAC 152032
|| |||| || | |||||| | ||||||||| | |||| || ||||| |
Sbjct 3368 TCCATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAAACA 3427
Query 152033 GTCTTTTTCTGTTTTAGATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTGC 152092
|||||||| |||| | | |||| || | || | ||| | |||||||||
Sbjct 3428 TTCTTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTGT 3487
Query 152093 ATCCTCAATA---TGTTTTGCATATGTGCGTTTAACATAAGGAG--AAAGTACTTTATCT 152147
|| | ||| | | || || | | ||| |||||||| | ||| || | |||
Sbjct 3488 TTCTTTAATTAACTTTATTTCAGAAGC---TTTTACATAAGGGGCTAAAATAAT--ATCG 3542
Query 152148 ACATTCGCAAAAGTCGTTCCGCCATATTGATGGGAAGCAACCTGTGCAGTAATTTGTGCC 152207
| ||| || || ||||| ||||| ||| || || || || | ||||| ||
Sbjct 3543 ATATTGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCA 3602
Query 152208 ATAATTGCAGTAGCAACGCCAATTGATTTAGGAGTTTCAATCTGTGCATTACCAAGCTTA 152267
| || || || || |||||||| ||||||||||| | ||||| || | |||
Sbjct 3603 GTTATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTA 3662
Query 152268 AATCCGTTCTCAAGCATTCCTTTTAAATCTACTAAACAGCAATTAGTAAATGGAAGAGCA 152327
|| || |||||||||||||||||||| ||||| |||||| | ||||| |
Sbjct 3663 AAGCCACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAAT 3722
Query 152328 GGGGAATAATCAATATCATGGAAATGAATAATTCCGCTTTCATGCGCTTTCATAATAAAA 152387
|| |||||||| | |||||| ||||||| || ||||||| || ||| | | |
Sbjct 3723 GGTGAATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--AC 3778
Query 152388 GAC----GGGACCAT---ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTC 152440
| | || | || |||||| ||| |||||||| | |||||||| | | ||
Sbjct 3779 GTCTTTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATC 3838
Query 152441 CCGTTGAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTT 152485
| ||||||||||| |||| ||||||||||||||| || ||
Sbjct 3839 TCTTTGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATT 3883
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 535558462363080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |