Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_028448.1 Length=167467 Score E Sequences producing significant alignments: (Bits) Value seq2789 120 3e-22 >seq2789 Length=15484 Score = 120 bits (132), Expect = 3e-22 Identities = 494/765 (65%), Gaps = 27/765 (4%) Strand=Plus/Plus Query 151736 AATATCAGGATACATCCTTTTGCTTGCGCACTCTAGAGCAAGCTGCTTAATATCATAGTT 151795 ||||||||||||||| | || ||| || || || || || || || |||||||| || Sbjct 3131 AATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATT 3190 Query 151796 CGGATCGTCTTTGTAAAG--ATTAACGCCTTCTTCGACGAACATAACAAGCTTAGGGAAA 151853 |||||| || | ||| ||| ||||||| | | | |||||| || || || Sbjct 3191 AGGATCG-CTAT-TAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAAT 3248 Query 151854 ATAGGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGA 151913 | | ||| | || || | || || || | ||| | | |||| ||| ||| Sbjct 3249 ACTGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGA 3308 Query 151914 ATCATTCGTTCAG-TCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGTGTTTG 151972 || | || ||| | || | | | || ||||| || || ||||| || ||||| Sbjct 3309 ATTAATCTTTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTTG 3367 Query 151973 CCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATAC 152032 || |||| || | |||||| | ||||||||| | |||| || ||||| | Sbjct 3368 TCCATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAAACA 3427 Query 152033 GTCTTTTTCTGTTTTAGATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTGC 152092 |||||||| |||| | | |||| || | || | ||| | ||||||||| Sbjct 3428 TTCTTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTGT 3487 Query 152093 ATCCTCAATA---TGTTTTGCATATGTGCGTTTAACATAAGGAG--AAAGTACTTTATCT 152147 || | ||| | | || || | | ||| |||||||| | ||| || | ||| Sbjct 3488 TTCTTTAATTAACTTTATTTCAGAAGC---TTTTACATAAGGGGCTAAAATAAT--ATCG 3542 Query 152148 ACATTCGCAAAAGTCGTTCCGCCATATTGATGGGAAGCAACCTGTGCAGTAATTTGTGCC 152207 | ||| || || ||||| ||||| ||| || || || || | ||||| || Sbjct 3543 ATATTGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCA 3602 Query 152208 ATAATTGCAGTAGCAACGCCAATTGATTTAGGAGTTTCAATCTGTGCATTACCAAGCTTA 152267 | || || || || |||||||| ||||||||||| | ||||| || | ||| Sbjct 3603 GTTATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTA 3662 Query 152268 AATCCGTTCTCAAGCATTCCTTTTAAATCTACTAAACAGCAATTAGTAAATGGAAGAGCA 152327 || || |||||||||||||||||||| ||||| |||||| | ||||| | Sbjct 3663 AAGCCACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAAT 3722 Query 152328 GGGGAATAATCAATATCATGGAAATGAATAATTCCGCTTTCATGCGCTTTCATAATAAAA 152387 || |||||||| | |||||| ||||||| || ||||||| || ||| | | | Sbjct 3723 GGTGAATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--AC 3778 Query 152388 GAC----GGGACCAT---ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTC 152440 | | || | || |||||| ||| |||||||| | |||||||| | | || Sbjct 3779 GTCTTTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATC 3838 Query 152441 CCGTTGAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTT 152485 | ||||||||||| |||| ||||||||||||||| || || Sbjct 3839 TCTTTGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATT 3883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535558462363080