Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq9465 154 1e-32 seq26883 100 2e-16 >seq9465 Length=7312 Score = 154 bits (170), Expect = 1e-32 Identities = 322/477 (68%), Gaps = 16/477 (3%) Strand=Plus/Plus Query 135295 TGAAGAGTGTCTAGTGCGCCGCGAATTGGCGGACAATTTTTGTTATTATAACAAACATTA 135354 ||||||| | ||||| || || ||| | || |||||||||| ||| || ||||||| Sbjct 6174 TGAAGAGGCAATTGTGCGTCGAGAGTTGTCTGATAATTTTTGTTTTTACAATGAACATTA 6233 Query 135355 TGATTGCATAGAAGGTGCTCCGGCATGGGCGCAACAAACTTTGCACGCTCACGCCTCTGA 135414 |||| |||| | ||||| | || ||||| ||| ||| | | | ||| || Sbjct 6234 TGATAGCATCAAGGGTGCAGCTGCTTGGGCACAAACAACGCTAGATGATCATAAGAAGGA 6293 Query 135415 T---CGCAGAGACTTTTGT-TACACGCGCGAGCAATGGGACCAAGCGTTGACGCATGACC 135470 | |||| ||| ||| |||| || ||| || ||||| || || || Sbjct 6294 TAAACGCA----CTTCTGTGTACAGTTTGCAGGAATTTGAGGAAGCGCGCACACACGAGG 6349 Query 135471 CGTTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGC 135530 || ||||| || |||||| ||| | || | || || |||||||| || ||||||| Sbjct 6350 ATTTATGGAATGCAGCACAAATACAGTTGAAAAGGGAGGGTAAAATGCATGGTTTTATGC 6409 Query 135531 GCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAAC 135590 ||||||||||||| ||||| ||| | |||||||| | | || | | || | || Sbjct 6410 GCATGTATTGGGCTAAAAAAATACTAGAATGGTCGGAAAGTCCAGAGAAAGCTTTGGAAA 6469 Query 135591 ACGCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAG 135650 || || | ||| ||||| | || | || || | ||| | ||||| | || | Sbjct 6470 TTGCCATCTATTTGAATGACAAGTATGCGCTGGACGGCAGTGATCCTAATGGTTTTGTTG 6529 Query 135651 GTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATG----GAAGGAGCGCAAAGTG 135706 ||||||||||||| ||||| || |||| ||||||||||| ||| |||| ||| Sbjct 6530 GTTGTATGTGGTCGATTTGTGGCATACATGATCAAGGATGGGGTGAAAGAGC----AGTT 6585 Query 135707 TTTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAAT 135763 ||||| || || || || |||||||||| || |||| | | |||||| |||| ||| Sbjct 6586 TTTGGTAAAATACGTTACATGAACTATGCTGGCTGTAAACGCAAATTTGATGTCAAT 6642 >seq26883 Length=1584 Score = 100 bits (110), Expect = 2e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27093 ATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACC 27152 || || || || ||||||||||| || | ||| ||||| |||||||| || | || Sbjct 563 ATTCCCCCAGACCAACAGCGTTTGATTTTCGCTGGCAAGCAATTGGAGGATGGCCGCACA 622 Query 27153 GTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGT 27212 | ||||||||||||||||||||||||| || || |||||||| |||||| | || ||| Sbjct 623 TTGGCCGATTACAACATTCAAAAGGAGTCTACATTGCATTTGGTGTTGCGTCTTCGTGGT 682 Query 27213 GGCAT 27217 || || Sbjct 683 GGTAT 687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434749602732480