Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq9465 154 1e-32
seq26883 100 2e-16
>seq9465
Length=7312
Score = 154 bits (170), Expect = 1e-32
Identities = 322/477 (68%), Gaps = 16/477 (3%)
Strand=Plus/Plus
Query 135295 TGAAGAGTGTCTAGTGCGCCGCGAATTGGCGGACAATTTTTGTTATTATAACAAACATTA 135354
||||||| | ||||| || || ||| | || |||||||||| ||| || |||||||
Sbjct 6174 TGAAGAGGCAATTGTGCGTCGAGAGTTGTCTGATAATTTTTGTTTTTACAATGAACATTA 6233
Query 135355 TGATTGCATAGAAGGTGCTCCGGCATGGGCGCAACAAACTTTGCACGCTCACGCCTCTGA 135414
|||| |||| | ||||| | || ||||| ||| ||| | | | ||| ||
Sbjct 6234 TGATAGCATCAAGGGTGCAGCTGCTTGGGCACAAACAACGCTAGATGATCATAAGAAGGA 6293
Query 135415 T---CGCAGAGACTTTTGT-TACACGCGCGAGCAATGGGACCAAGCGTTGACGCATGACC 135470
| |||| ||| ||| |||| || ||| || ||||| || || ||
Sbjct 6294 TAAACGCA----CTTCTGTGTACAGTTTGCAGGAATTTGAGGAAGCGCGCACACACGAGG 6349
Query 135471 CGTTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGC 135530
|| ||||| || |||||| ||| | || | || || |||||||| || |||||||
Sbjct 6350 ATTTATGGAATGCAGCACAAATACAGTTGAAAAGGGAGGGTAAAATGCATGGTTTTATGC 6409
Query 135531 GCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAAC 135590
||||||||||||| ||||| ||| | |||||||| | | || | | || | ||
Sbjct 6410 GCATGTATTGGGCTAAAAAAATACTAGAATGGTCGGAAAGTCCAGAGAAAGCTTTGGAAA 6469
Query 135591 ACGCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAG 135650
|| || | ||| ||||| | || | || || | ||| | ||||| | || |
Sbjct 6470 TTGCCATCTATTTGAATGACAAGTATGCGCTGGACGGCAGTGATCCTAATGGTTTTGTTG 6529
Query 135651 GTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATG----GAAGGAGCGCAAAGTG 135706
||||||||||||| ||||| || |||| ||||||||||| ||| |||| |||
Sbjct 6530 GTTGTATGTGGTCGATTTGTGGCATACATGATCAAGGATGGGGTGAAAGAGC----AGTT 6585
Query 135707 TTTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAAT 135763
||||| || || || || |||||||||| || |||| | | |||||| |||| |||
Sbjct 6586 TTTGGTAAAATACGTTACATGAACTATGCTGGCTGTAAACGCAAATTTGATGTCAAT 6642
>seq26883
Length=1584
Score = 100 bits (110), Expect = 2e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 27093 ATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACC 27152
|| || || || ||||||||||| || | ||| ||||| |||||||| || | ||
Sbjct 563 ATTCCCCCAGACCAACAGCGTTTGATTTTCGCTGGCAAGCAATTGGAGGATGGCCGCACA 622
Query 27153 GTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGT 27212
| ||||||||||||||||||||||||| || || |||||||| |||||| | || |||
Sbjct 623 TTGGCCGATTACAACATTCAAAAGGAGTCTACATTGCATTTGGTGTTGCGTCTTCGTGGT 682
Query 27213 GGCAT 27217
|| ||
Sbjct 683 GGTAT 687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434749602732480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |