Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_028656.1
Length=65955
Score E
Sequences producing significant alignments: (Bits) Value
seq5383 149 3e-31
seq2410 96.9 1e-15
seq1262 93.3 2e-14
>seq5383
Length=2974
Score = 149 bits (164), Expect = 3e-31
Identities = 168/225 (75%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 65221 ACCGTTAAACACCAGATAGAGGATTTCAACAGAACCGACAACGATGTGAGTGGTGTCACC 65280
|||||| ||||||||||||| ||| || || ||||| || ||||| || | ||| ||
Sbjct 2746 ACCGTTGAACACCAGATAGAAGATCTCTACCGAACCCACCACGATATGCGCCAGGTCGCC 2805
Query 65281 CAGGGCAATAAGCCAGGTCATCAATATAATCACCACAATCTTTGCCGCACCCGCTGCAGG 65340
|| || | ||||||||||||| ||||| | | || || || | || || | |||
Sbjct 2806 GAGCGCTACCAGCCAGGTCATCAGGATAATAATCCAGATTTTCGCGCCGCCAGCGGAAGG 2865
Query 65341 AAACATCCATACCATAGTGGCGATCAGCCAGCCGGAAATGATCGCGTTGGCAAACATCTC 65400
||||||||||||||||||||||| | ||||||||| | | ||| ||||||||||||||
Sbjct 2866 GAACATCCATACCATAGTGGCGATAATCCAGCCGGATACCACCGCATTGGCAAACATCTC 2925
Query 65401 GCTGGGGGTGTTCTTCATCACATCCATGCCGATTTTGACAAATGC 65445
| || || |||| |||||| | | | ||| ||||||| ||
Sbjct 2926 TCCCGGCGTATTCTCCATCACTTTCTGACTGATGCTGACAAAGGC 2970
>seq2410
Length=3205
Score = 96.9 bits (106), Expect = 1e-15
Identities = 68/78 (87%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 1320 TGGTGTCCCCTGCAGGAATCGAACCTGCAATTAGCCCTTAGGAGGGGCTCGTTATATCCA 1379
||||||||| |||||||||||||||||||| || ||||||||| ||||||||||||
Sbjct 778 TGGTGTCCCGTGCAGGAATCGAACCTGCAACTATTTCTTAGGAGGAAATCGTTATATCCA 719
Query 1380 TTTAACTAAGAGGACATT 1397
||||||||| ||||| ||
Sbjct 718 TTTAACTAACAGGACTTT 701
Score = 93.3 bits (102), Expect = 2e-14
Identities = 67/76 (88%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 27184 GCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 27242
|||| |||||||||| ||| ||||| | ||||||||||||| ||||||||||||||| |
Sbjct 951 GCCCCTTAGCTCAGTTGGTTAGAGCAAACGACTCATAATCGTTAGGTCGCTGGTTCAAGT 1010
Query 27243 CCAGCAAGGGCCACCA 27258
|||||| |||||||||
Sbjct 1011 CCAGCAGGGGCCACCA 1026
Score = 82.4 bits (90), Expect = 3e-11
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 27185 CCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAATC 27243
||| |||||||||| ||| ||||| ||||||||||||| |||||||||||||||| ||
Sbjct 2304 CCCCTTAGCTCAGTTGGTTAGAGCATACGACTCATAATCGTCAGGTCGCTGGTTCAAGTC 2363
Query 27244 CAGCAAGGGCCACCA 27258
||||| | | |||||
Sbjct 2364 CAGCAGGAGGCACCA 2378
>seq1262
Length=72559
Score = 93.3 bits (102), Expect = 2e-14
Identities = 68/78 (87%), Gaps = 1/78 (1%)
Strand=Plus/Minus
Query 27182 CGGCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAA 27240
|||||| |||||||||| ||| ||||| ||||||||||||| |||||||||||||||
Sbjct 63895 CGGCCCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCGTTAGGTCGCTGGTTCAA 63836
Query 27241 ATCCAGCAAGGGCCACCA 27258
||||||| |||||||||
Sbjct 63835 GTCCAGCAGGGGCCACCA 63818
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 210851381590524
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |