Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_028656.1 Length=65955 Score E Sequences producing significant alignments: (Bits) Value seq5383 149 3e-31 seq2410 96.9 1e-15 seq1262 93.3 2e-14 >seq5383 Length=2974 Score = 149 bits (164), Expect = 3e-31 Identities = 168/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 65221 ACCGTTAAACACCAGATAGAGGATTTCAACAGAACCGACAACGATGTGAGTGGTGTCACC 65280 |||||| ||||||||||||| ||| || || ||||| || ||||| || | ||| || Sbjct 2746 ACCGTTGAACACCAGATAGAAGATCTCTACCGAACCCACCACGATATGCGCCAGGTCGCC 2805 Query 65281 CAGGGCAATAAGCCAGGTCATCAATATAATCACCACAATCTTTGCCGCACCCGCTGCAGG 65340 || || | ||||||||||||| ||||| | | || || || | || || | ||| Sbjct 2806 GAGCGCTACCAGCCAGGTCATCAGGATAATAATCCAGATTTTCGCGCCGCCAGCGGAAGG 2865 Query 65341 AAACATCCATACCATAGTGGCGATCAGCCAGCCGGAAATGATCGCGTTGGCAAACATCTC 65400 ||||||||||||||||||||||| | ||||||||| | | ||| |||||||||||||| Sbjct 2866 GAACATCCATACCATAGTGGCGATAATCCAGCCGGATACCACCGCATTGGCAAACATCTC 2925 Query 65401 GCTGGGGGTGTTCTTCATCACATCCATGCCGATTTTGACAAATGC 65445 | || || |||| |||||| | | | ||| ||||||| || Sbjct 2926 TCCCGGCGTATTCTCCATCACTTTCTGACTGATGCTGACAAAGGC 2970 >seq2410 Length=3205 Score = 96.9 bits (106), Expect = 1e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 1320 TGGTGTCCCCTGCAGGAATCGAACCTGCAATTAGCCCTTAGGAGGGGCTCGTTATATCCA 1379 ||||||||| |||||||||||||||||||| || ||||||||| |||||||||||| Sbjct 778 TGGTGTCCCGTGCAGGAATCGAACCTGCAACTATTTCTTAGGAGGAAATCGTTATATCCA 719 Query 1380 TTTAACTAAGAGGACATT 1397 ||||||||| ||||| || Sbjct 718 TTTAACTAACAGGACTTT 701 Score = 93.3 bits (102), Expect = 2e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 27184 GCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 27242 |||| |||||||||| ||| ||||| | ||||||||||||| ||||||||||||||| | Sbjct 951 GCCCCTTAGCTCAGTTGGTTAGAGCAAACGACTCATAATCGTTAGGTCGCTGGTTCAAGT 1010 Query 27243 CCAGCAAGGGCCACCA 27258 |||||| ||||||||| Sbjct 1011 CCAGCAGGGGCCACCA 1026 Score = 82.4 bits (90), Expect = 3e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 27185 CCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAATC 27243 ||| |||||||||| ||| ||||| ||||||||||||| |||||||||||||||| || Sbjct 2304 CCCCTTAGCTCAGTTGGTTAGAGCATACGACTCATAATCGTCAGGTCGCTGGTTCAAGTC 2363 Query 27244 CAGCAAGGGCCACCA 27258 ||||| | | ||||| Sbjct 2364 CAGCAGGAGGCACCA 2378 >seq1262 Length=72559 Score = 93.3 bits (102), Expect = 2e-14 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 27182 CGGCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAA 27240 |||||| |||||||||| ||| ||||| ||||||||||||| ||||||||||||||| Sbjct 63895 CGGCCCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCGTTAGGTCGCTGGTTCAA 63836 Query 27241 ATCCAGCAAGGGCCACCA 27258 ||||||| ||||||||| Sbjct 63835 GTCCAGCAGGGGCCACCA 63818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 210851381590524