Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_028660.1 Length=61035 Score E Sequences producing significant alignments: (Bits) Value seq2410 93.3 2e-14 seq1262 93.3 2e-14 >seq2410 Length=3205 Score = 93.3 bits (102), Expect = 2e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 10213 TGGTGGCCCTTGCTGGATTTGAACCAGCGACCTGGCGATTATGAGTCGCTCGCTCTCACC 10272 ||||||||| ||||||| ||||||||||||||| ||||||||||||| | ||||| ||| Sbjct 1026 TGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTGCTCTAACC 967 Query 10273 -ACTGAGCTAAAGGGC 10287 |||||||||| |||| Sbjct 966 AACTGAGCTAAGGGGC 951 Score = 82.4 bits (90), Expect = 3e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 10213 TGGTGGCCCTTGCTGGATTTGAACCAGCGACCTGGCGATTATGAGTCGCTCGCTCTCACC 10272 ||||| | | ||||||| |||||||||||||||| ||||||||||||| ||||| ||| Sbjct 2378 TGGTGCCTCCTGCTGGACTTGAACCAGCGACCTGACGATTATGAGTCGTATGCTCTAACC 2319 Query 10273 -ACTGAGCTAAAGGG 10286 |||||||||| ||| Sbjct 2318 AACTGAGCTAAGGGG 2304 >seq1262 Length=72559 Score = 93.3 bits (102), Expect = 2e-14 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 10213 TGGTGGCCCTTGCTGGATTTGAACCAGCGACCTGGCGATTATGAGTCGCTCGCTCTCACC 10272 ||||||||| ||||||| ||||||||||||||| ||||||||||||| ||||| ||| Sbjct 63818 TGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAACC 63877 Query 10273 -ACTGAGCTAAAGGGCCG 10289 |||||||||| |||||| Sbjct 63878 AACTGAGCTAAGGGGCCG 63895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195118431957586