Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_028686.1
Length=166313
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 168 7e-37
>seq2789
Length=15484
Score = 168 bits (186), Expect = 7e-37
Identities = 504/763 (66%), Gaps = 21/763 (3%)
Strand=Plus/Plus
Query 28653 ATATCAGGATACATACGTTTAGCTGCGCATTCTAATGCAAGCTGCTTAATATCATAGTTC 28712
|||||||||||||| |||| | || ||||| | || || || || |||||||| ||
Sbjct 3132 ATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATTA 3191
Query 28713 GGGTCTTCTTTACGTAGATTAATGCCTTCTTCTA---CAAACATCACAAGCTTTGGAAAG 28769
|| || ||| | ||| | ||||||| || |||| | |||| ||||||||
Sbjct 3192 GGATCGCTATTAATTCTATTTGTCCCTTCTTTTATGGCAAAAA---CAAGTTTTGGAAAT 3248
Query 28770 ATTGGAGTAATTCCATCGCGTCCTAATCCACGAATAC-GATTATCAAGAATAGCTCGTTG 28828
| || || || || |||||| ||| || | | || | || | | | | |||
Sbjct 3249 ACTGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATT-GATTTTTG 3307
Query 28829 AATTAATTTTTCTTCCCATGACGTGCCCATACCAAATGTGATAGTCACAAACGGGGTTTG 28888
||||||| |||| || || | || | ||||| | ||| ||||| ||||||||
Sbjct 3308 AATTAATCTTTCCTCTTTTGTAATTCCAAGTCCAAAACCAAAAGTAACAAATGGGGTTTG 3367
Query 28889 GCCATTTGAGCTGAACAAAGTATTCACTTCATATTCATATGCCTGGAAAGCATCAAATAC 28948
||||||| | | ||||||||| | ||||||||| || | || ||||||||||| ||
Sbjct 3368 TCCATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAA-AC 3426
Query 28949 AT-CTTTTTCTGTTTTTGAAATAGCATAATCTTTT--ACTAATGCTACTTGATATTTGCG 29005
|| ||||||| ||||| | || |||| | | | | | | || | || ||| |
Sbjct 3427 ATTCTTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTG 3486
Query 29006 TG-CATCACGTACATGTTTAGCGAATGTCTTCTCCACATAAGGAGCCAATACTAAATCGA 29064
| | | | || | | | | | | ||| | |||||||| || || | | |||||
Sbjct 3487 TTTCTTTAATTAACTTTATTTCAGAAG-CTTTT--ACATAAGGGGCTAAAATAATATCGA 3543
Query 29065 CGTTAGCAAACGTAGTTCCACCATACTGGTGAGATGCTACTTGCGCAGTGATTTGCGCCA 29124
|| || ||| ||||||||||| ||| ||| |||||||| | ||||| ||
Sbjct 3544 TATTGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAG 3603
Query 29125 TGATAGCGGTAGCTACTCCAATACTCTTAGGAGTTTCAATTTGAGCGTTACCAAGTTTAA 29184
| ||||| || ||| |||||| ||||||||||||| ||| || || | |||||
Sbjct 3604 TTATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAA 3663
Query 29185 AGCCGTTCTGCAA-CATACCCTTCAAATCTACCAAACAGCAGTTAGTGAAAGGCAAAGCT 29243
|||| || ||| ||| || || ||||| || || || ||| | || ||| |
Sbjct 3664 AGCC-ACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAAT 3722
Query 29244 GGACTATAGTCCATATCATGAAAATGGATAACACCTTCTTTGTGTGCTTCCATTACAGAG 29303
|| ||| || | ||||||| |||| || |||||| || || || || | |||
Sbjct 3723 GGTGAATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGCGTCAACTACGTCT 3782
Query 29304 ACAGGAATGACCTGA---TTAGCGATATGTTTAGATACGATACCAGCCATCAGGTCACGT 29360
|||| | ||| ||||| ||||||||| | |||||||| | || || | |
Sbjct 3783 TTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATCTCTT 3842
Query 29361 TGGGTAGGAAAAACACGAGAATCTTTGTTAGCATTCTCGTTTA 29403
|| || |||| |||| |||||| |||||||| || ||||
Sbjct 3843 TGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531867095584920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |