Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_028686.1 Length=166313 Score E Sequences producing significant alignments: (Bits) Value seq2789 168 7e-37 >seq2789 Length=15484 Score = 168 bits (186), Expect = 7e-37 Identities = 504/763 (66%), Gaps = 21/763 (3%) Strand=Plus/Plus Query 28653 ATATCAGGATACATACGTTTAGCTGCGCATTCTAATGCAAGCTGCTTAATATCATAGTTC 28712 |||||||||||||| |||| | || ||||| | || || || || |||||||| || Sbjct 3132 ATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATTA 3191 Query 28713 GGGTCTTCTTTACGTAGATTAATGCCTTCTTCTA---CAAACATCACAAGCTTTGGAAAG 28769 || || ||| | ||| | ||||||| || |||| | |||| |||||||| Sbjct 3192 GGATCGCTATTAATTCTATTTGTCCCTTCTTTTATGGCAAAAA---CAAGTTTTGGAAAT 3248 Query 28770 ATTGGAGTAATTCCATCGCGTCCTAATCCACGAATAC-GATTATCAAGAATAGCTCGTTG 28828 | || || || || |||||| ||| || | | || | || | | | | ||| Sbjct 3249 ACTGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATT-GATTTTTG 3307 Query 28829 AATTAATTTTTCTTCCCATGACGTGCCCATACCAAATGTGATAGTCACAAACGGGGTTTG 28888 ||||||| |||| || || | || | ||||| | ||| ||||| |||||||| Sbjct 3308 AATTAATCTTTCCTCTTTTGTAATTCCAAGTCCAAAACCAAAAGTAACAAATGGGGTTTG 3367 Query 28889 GCCATTTGAGCTGAACAAAGTATTCACTTCATATTCATATGCCTGGAAAGCATCAAATAC 28948 ||||||| | | ||||||||| | ||||||||| || | || ||||||||||| || Sbjct 3368 TCCATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAA-AC 3426 Query 28949 AT-CTTTTTCTGTTTTTGAAATAGCATAATCTTTT--ACTAATGCTACTTGATATTTGCG 29005 || ||||||| ||||| | || |||| | | | | | | || | || ||| | Sbjct 3427 ATTCTTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTG 3486 Query 29006 TG-CATCACGTACATGTTTAGCGAATGTCTTCTCCACATAAGGAGCCAATACTAAATCGA 29064 | | | | || | | | | | | ||| | |||||||| || || | | ||||| Sbjct 3487 TTTCTTTAATTAACTTTATTTCAGAAG-CTTTT--ACATAAGGGGCTAAAATAATATCGA 3543 Query 29065 CGTTAGCAAACGTAGTTCCACCATACTGGTGAGATGCTACTTGCGCAGTGATTTGCGCCA 29124 || || ||| ||||||||||| ||| ||| |||||||| | ||||| || Sbjct 3544 TATTGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAG 3603 Query 29125 TGATAGCGGTAGCTACTCCAATACTCTTAGGAGTTTCAATTTGAGCGTTACCAAGTTTAA 29184 | ||||| || ||| |||||| ||||||||||||| ||| || || | ||||| Sbjct 3604 TTATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAA 3663 Query 29185 AGCCGTTCTGCAA-CATACCCTTCAAATCTACCAAACAGCAGTTAGTGAAAGGCAAAGCT 29243 |||| || ||| ||| || || ||||| || || || ||| | || ||| | Sbjct 3664 AGCC-ACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAAT 3722 Query 29244 GGACTATAGTCCATATCATGAAAATGGATAACACCTTCTTTGTGTGCTTCCATTACAGAG 29303 || ||| || | ||||||| |||| || |||||| || || || || | ||| Sbjct 3723 GGTGAATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGCGTCAACTACGTCT 3782 Query 29304 ACAGGAATGACCTGA---TTAGCGATATGTTTAGATACGATACCAGCCATCAGGTCACGT 29360 |||| | ||| ||||| ||||||||| | |||||||| | || || | | Sbjct 3783 TTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATCTCTT 3842 Query 29361 TGGGTAGGAAAAACACGAGAATCTTTGTTAGCATTCTCGTTTA 29403 || || |||| |||| |||||| |||||||| || |||| Sbjct 3843 TGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531867095584920