Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_028696.2 Length=41338 Score E Sequences producing significant alignments: (Bits) Value seq3548 185 2e-42 >seq3548 Length=8984 Score = 185 bits (204), Expect = 2e-42 Identities = 440/658 (67%), Gaps = 42/658 (6%) Strand=Plus/Minus Query 17359 CTGACAGCTGACCAGCCCCAGCTCTTTCATGAGTCTGCCAGCAAGCCAGCGCCCCATCTG 17418 |||||||||| | | |||||||| |||| || | || || ||||| ||||||| | Sbjct 7518 CTGACAGCTGGCGATGTCCAGCTCTGTCATTAGCTTACCGGCCAGCCAATGCCCCATTTT 7459 Query 17419 GTAGCC----TCTCTGGGTTGCCATTGTGGCGATGCTTCTTGCTCCGGCAGAGCCGTGGC 17474 | ||| || | |||| | || | |||||||||| || |||||||||||| || Sbjct 7458 GACGCCGGAGTCCC-GGGTAACGATGCTCGCGATGCTTCGGGCGCCGGCAGAGCCGCCGC 7400 Query 17475 TGATG--CCATGCAGTTCAAGTACCTGGCTGCGTA-ATACAGCCCGTCTGCCGTCTGGCT 17531 || || ||| || || | |||||||||||| | || | || |||||||||| Sbjct 7399 TGGTGTTCCAGGCC--TCCATGACCTGGCTGCGTTTAGTCACGCGCTCC-CCGTCTGGCT 7343 Query 17532 TTTCAGGACGGTTTTT-CCAGTATTTGTAGCTGCTGCGATGGACCCCGAACACATGGCAG 17590 | || || | |||||| |||||||||||||||| ||| || ||||| Sbjct 7342 CATT-GGCCGAAGCCTGCCAGTACCTGTAGCTGCTGCGATGTACCTTAAAAGTCTGGCAC 7284 Query 17591 AGAGTGGCCACAGGATAACGCGCCCTGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGT 17650 || ||| || || || |||||||| || | ||| || | ||| ||| || |||| Sbjct 7283 AGGATGGTGACCGGGTATCGCGCCCTCAGCCTGTCGACTACAGTAAACCGTTGAGTGAGT 7224 Query 17651 CTGACATCAAGAGCGCGGTAGCCTTTTTTAATATTTCATTTTCCATTTCAATACGTTGTA 17710 | ||||| |||||||| |||||||||||||||||||| ||||||||||||| ||||||| Sbjct 7223 CCGACATTAAGAGCGCCGTAGCCTTTTTTAATATTTCGTTTTCCATTTCAAGGCGTTGTA 7164 Query 17711 GCTTTTTCCTGAGCTCACGGATTTCAATTTGTTCCGGGGTAATGGGGGAGGCTTTTGGTG 17770 |||||| | | |||||| | || | || | ||| Sbjct 7163 TTTTTTTCTTCATCTCACGCAGCTCGAGCTG---------------------CTNAGGTT 7125 Query 17771 TTTTGCCCTGCCGCTCATCACGTAATTGTTTCACCCATCGCGTCATTGTGGAAAGGCCGA 17830 |||| || || ||||| | | || || ||||| || || | | || ||| || Sbjct 7124 TTTTACCTTGTCGCTCCAGCCTGAGTTTATTGACCCAGCGAGTAAGAGCCGACTGGCTGA 7065 Query 17831 CATCCATAGCGCT--GGCTGCATCTGCCACGGTGTAATTCTGGTCAACGACCAGTTGAGC 17888 || | | |||| ||| || | || | ||||| ||||| || ||||||| || Sbjct 7064 CA--CTAACCGCTTCGGCGGCTTTAGCAAATGTGTAGCCGTGGTCGACAACCAGTTTTGC 7007 Query 17889 GGATTCGCGTTTAAACTCTGCGCTGAAATTTCtttttttCATTATGGCACCTGTGTTGTT 17948 | |||| | ||||| || || |||||| ||| |||| |||||||| ||| Sbjct 7006 AGCTTCGAGCTTAAATTCAGCCGTGAAAT---GTTTAGCCATTTGAGCACCTGTTGTGTA 6950 Query 17949 CT-GAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCAATT 18005 | | ||||||||||||||||| | | ||||||||| |||||| ||||| || || Sbjct 6949 GTGGGGGTGAGCATATCACCTCCGATTAGGTGGCCAGTATCAGTATGCCACTACAGTT 6892 Score = 183 bits (202), Expect = 8e-42 Identities = 438/655 (67%), Gaps = 42/655 (6%) Strand=Plus/Minus Query 39984 CTGACAGCTGACCAGCCCCAGCTCTTTCATGAGTCTGCCAGCAAGCCAGCGCCCCATCTG 40043 |||||||||| | | |||||||| |||| || | || || ||||| ||||||| | Sbjct 7518 CTGACAGCTGGCGATGTCCAGCTCTGTCATTAGCTTACCGGCCAGCCAATGCCCCATTTT 7459 Query 40044 GTAGCC----TCTCTGGGTTGCCATTGTGGCGATGCTTCTTGCTCCGGCAGAGCCGTGGC 40099 | ||| || | |||| | || | |||||||||| || |||||||||||| || Sbjct 7458 GACGCCGGAGTCCC-GGGTAACGATGCTCGCGATGCTTCGGGCGCCGGCAGAGCCGCCGC 7400 Query 40100 TGATG--CCATGCAGTTCAAGTACCTGGCTGCGTA-ATACAGCCCGTCTGCCGTCTGGCT 40156 || || ||| || || | |||||||||||| | || | || |||||||||| Sbjct 7399 TGGTGTTCCAGGCC--TCCATGACCTGGCTGCGTTTAGTCACGCGCTCC-CCGTCTGGCT 7343 Query 40157 TTTCAGGACGGTTTTT-CCAGTATTTGTAGCTGCTGCGATGGACCCCGAACACATGGCAG 40215 | || || | |||||| |||||||||||||||| ||| || ||||| Sbjct 7342 CATT-GGCCGAAGCCTGCCAGTACCTGTAGCTGCTGCGATGTACCTTAAAAGTCTGGCAC 7284 Query 40216 AGAGTGGCCACAGGATAACGCGCCCTGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGT 40275 || ||| || || || |||||||| || | ||| || | ||| ||| || |||| Sbjct 7283 AGGATGGTGACCGGGTATCGCGCCCTCAGCCTGTCGACTACAGTAAACCGTTGAGTGAGT 7224 Query 40276 CTGACATCAAGAGCGCGGTAGCCTTTTTTAATATTTCATTTTCCATTTCAATACGTTGTA 40335 | ||||| |||||||| |||||||||||||||||||| ||||||||||||| ||||||| Sbjct 7223 CCGACATTAAGAGCGCCGTAGCCTTTTTTAATATTTCGTTTTCCATTTCAAGGCGTTGTA 7164 Query 40336 GCTTTTTCCTGAGCTCACGGATTTCAATTTGTTCCGGGGTAATGGGGGAGGCTTTTGGTG 40395 |||||| | | |||||| | || | || | ||| Sbjct 7163 TTTTTTTCTTCATCTCACGCAGCTCGAGCTG---------------------CTNAGGTT 7125 Query 40396 TTTTGCCCTGCCGCTCATCACGTAATTGTTTCACCCATCGCGTCATTGTGGAAAGGCCGA 40455 |||| || || ||||| | | || || ||||| || || | | || ||| || Sbjct 7124 TTTTACCTTGTCGCTCCAGCCTGAGTTTATTGACCCAGCGAGTAAGAGCCGACTGGCTGA 7065 Query 40456 CATCCATAGCGCT--GGCTGCATCTGCCACGGTGTAATTCTGGTCAACGACCAGTTGAGC 40513 || | | |||| ||| || | || | ||||| ||||| || ||||||| || Sbjct 7064 CA--CTAACCGCTTCGGCGGCTTTAGCAAATGTGTAGCCGTGGTCGACAACCAGTTTTGC 7007 Query 40514 GGATTCGCGTTTAAACTCTGCGCTGAAATTTCtttttttCATTATGGCACCTGTGTTGTT 40573 | |||| | ||||| || || |||||| ||| |||| |||||||| ||| Sbjct 7006 AGCTTCGAGCTTAAATTCAGCCGTGAAAT---GTTTAGCCATTTGAGCACCTGTTGTGTA 6950 Query 40574 CT-GAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCA 40627 | | ||||||||||||||||| | | ||||||||| |||||| ||||| || Sbjct 6949 GTGGGGGTGAGCATATCACCTCCGATTAGGTGGCCAGTATCAGTATGCCACTACA 6895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132111271699400