Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_028696.2
Length=41338
Score E
Sequences producing significant alignments: (Bits) Value
seq3548 185 2e-42
>seq3548
Length=8984
Score = 185 bits (204), Expect = 2e-42
Identities = 440/658 (67%), Gaps = 42/658 (6%)
Strand=Plus/Minus
Query 17359 CTGACAGCTGACCAGCCCCAGCTCTTTCATGAGTCTGCCAGCAAGCCAGCGCCCCATCTG 17418
|||||||||| | | |||||||| |||| || | || || ||||| ||||||| |
Sbjct 7518 CTGACAGCTGGCGATGTCCAGCTCTGTCATTAGCTTACCGGCCAGCCAATGCCCCATTTT 7459
Query 17419 GTAGCC----TCTCTGGGTTGCCATTGTGGCGATGCTTCTTGCTCCGGCAGAGCCGTGGC 17474
| ||| || | |||| | || | |||||||||| || |||||||||||| ||
Sbjct 7458 GACGCCGGAGTCCC-GGGTAACGATGCTCGCGATGCTTCGGGCGCCGGCAGAGCCGCCGC 7400
Query 17475 TGATG--CCATGCAGTTCAAGTACCTGGCTGCGTA-ATACAGCCCGTCTGCCGTCTGGCT 17531
|| || ||| || || | |||||||||||| | || | || ||||||||||
Sbjct 7399 TGGTGTTCCAGGCC--TCCATGACCTGGCTGCGTTTAGTCACGCGCTCC-CCGTCTGGCT 7343
Query 17532 TTTCAGGACGGTTTTT-CCAGTATTTGTAGCTGCTGCGATGGACCCCGAACACATGGCAG 17590
| || || | |||||| |||||||||||||||| ||| || |||||
Sbjct 7342 CATT-GGCCGAAGCCTGCCAGTACCTGTAGCTGCTGCGATGTACCTTAAAAGTCTGGCAC 7284
Query 17591 AGAGTGGCCACAGGATAACGCGCCCTGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGT 17650
|| ||| || || || |||||||| || | ||| || | ||| ||| || ||||
Sbjct 7283 AGGATGGTGACCGGGTATCGCGCCCTCAGCCTGTCGACTACAGTAAACCGTTGAGTGAGT 7224
Query 17651 CTGACATCAAGAGCGCGGTAGCCTTTTTTAATATTTCATTTTCCATTTCAATACGTTGTA 17710
| ||||| |||||||| |||||||||||||||||||| ||||||||||||| |||||||
Sbjct 7223 CCGACATTAAGAGCGCCGTAGCCTTTTTTAATATTTCGTTTTCCATTTCAAGGCGTTGTA 7164
Query 17711 GCTTTTTCCTGAGCTCACGGATTTCAATTTGTTCCGGGGTAATGGGGGAGGCTTTTGGTG 17770
|||||| | | |||||| | || | || | |||
Sbjct 7163 TTTTTTTCTTCATCTCACGCAGCTCGAGCTG---------------------CTNAGGTT 7125
Query 17771 TTTTGCCCTGCCGCTCATCACGTAATTGTTTCACCCATCGCGTCATTGTGGAAAGGCCGA 17830
|||| || || ||||| | | || || ||||| || || | | || ||| ||
Sbjct 7124 TTTTACCTTGTCGCTCCAGCCTGAGTTTATTGACCCAGCGAGTAAGAGCCGACTGGCTGA 7065
Query 17831 CATCCATAGCGCT--GGCTGCATCTGCCACGGTGTAATTCTGGTCAACGACCAGTTGAGC 17888
|| | | |||| ||| || | || | ||||| ||||| || ||||||| ||
Sbjct 7064 CA--CTAACCGCTTCGGCGGCTTTAGCAAATGTGTAGCCGTGGTCGACAACCAGTTTTGC 7007
Query 17889 GGATTCGCGTTTAAACTCTGCGCTGAAATTTCtttttttCATTATGGCACCTGTGTTGTT 17948
| |||| | ||||| || || |||||| ||| |||| |||||||| |||
Sbjct 7006 AGCTTCGAGCTTAAATTCAGCCGTGAAAT---GTTTAGCCATTTGAGCACCTGTTGTGTA 6950
Query 17949 CT-GAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCAATT 18005
| | ||||||||||||||||| | | ||||||||| |||||| ||||| || ||
Sbjct 6949 GTGGGGGTGAGCATATCACCTCCGATTAGGTGGCCAGTATCAGTATGCCACTACAGTT 6892
Score = 183 bits (202), Expect = 8e-42
Identities = 438/655 (67%), Gaps = 42/655 (6%)
Strand=Plus/Minus
Query 39984 CTGACAGCTGACCAGCCCCAGCTCTTTCATGAGTCTGCCAGCAAGCCAGCGCCCCATCTG 40043
|||||||||| | | |||||||| |||| || | || || ||||| ||||||| |
Sbjct 7518 CTGACAGCTGGCGATGTCCAGCTCTGTCATTAGCTTACCGGCCAGCCAATGCCCCATTTT 7459
Query 40044 GTAGCC----TCTCTGGGTTGCCATTGTGGCGATGCTTCTTGCTCCGGCAGAGCCGTGGC 40099
| ||| || | |||| | || | |||||||||| || |||||||||||| ||
Sbjct 7458 GACGCCGGAGTCCC-GGGTAACGATGCTCGCGATGCTTCGGGCGCCGGCAGAGCCGCCGC 7400
Query 40100 TGATG--CCATGCAGTTCAAGTACCTGGCTGCGTA-ATACAGCCCGTCTGCCGTCTGGCT 40156
|| || ||| || || | |||||||||||| | || | || ||||||||||
Sbjct 7399 TGGTGTTCCAGGCC--TCCATGACCTGGCTGCGTTTAGTCACGCGCTCC-CCGTCTGGCT 7343
Query 40157 TTTCAGGACGGTTTTT-CCAGTATTTGTAGCTGCTGCGATGGACCCCGAACACATGGCAG 40215
| || || | |||||| |||||||||||||||| ||| || |||||
Sbjct 7342 CATT-GGCCGAAGCCTGCCAGTACCTGTAGCTGCTGCGATGTACCTTAAAAGTCTGGCAC 7284
Query 40216 AGAGTGGCCACAGGATAACGCGCCCTGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGT 40275
|| ||| || || || |||||||| || | ||| || | ||| ||| || ||||
Sbjct 7283 AGGATGGTGACCGGGTATCGCGCCCTCAGCCTGTCGACTACAGTAAACCGTTGAGTGAGT 7224
Query 40276 CTGACATCAAGAGCGCGGTAGCCTTTTTTAATATTTCATTTTCCATTTCAATACGTTGTA 40335
| ||||| |||||||| |||||||||||||||||||| ||||||||||||| |||||||
Sbjct 7223 CCGACATTAAGAGCGCCGTAGCCTTTTTTAATATTTCGTTTTCCATTTCAAGGCGTTGTA 7164
Query 40336 GCTTTTTCCTGAGCTCACGGATTTCAATTTGTTCCGGGGTAATGGGGGAGGCTTTTGGTG 40395
|||||| | | |||||| | || | || | |||
Sbjct 7163 TTTTTTTCTTCATCTCACGCAGCTCGAGCTG---------------------CTNAGGTT 7125
Query 40396 TTTTGCCCTGCCGCTCATCACGTAATTGTTTCACCCATCGCGTCATTGTGGAAAGGCCGA 40455
|||| || || ||||| | | || || ||||| || || | | || ||| ||
Sbjct 7124 TTTTACCTTGTCGCTCCAGCCTGAGTTTATTGACCCAGCGAGTAAGAGCCGACTGGCTGA 7065
Query 40456 CATCCATAGCGCT--GGCTGCATCTGCCACGGTGTAATTCTGGTCAACGACCAGTTGAGC 40513
|| | | |||| ||| || | || | ||||| ||||| || ||||||| ||
Sbjct 7064 CA--CTAACCGCTTCGGCGGCTTTAGCAAATGTGTAGCCGTGGTCGACAACCAGTTTTGC 7007
Query 40514 GGATTCGCGTTTAAACTCTGCGCTGAAATTTCtttttttCATTATGGCACCTGTGTTGTT 40573
| |||| | ||||| || || |||||| ||| |||| |||||||| |||
Sbjct 7006 AGCTTCGAGCTTAAATTCAGCCGTGAAAT---GTTTAGCCATTTGAGCACCTGTTGTGTA 6950
Query 40574 CT-GAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCA 40627
| | ||||||||||||||||| | | ||||||||| |||||| ||||| ||
Sbjct 6949 GTGGGGGTGAGCATATCACCTCCGATTAGGTGGCCAGTATCAGTATGCCACTACA 6895
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 132111271699400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |