Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_028762.1 Length=161989 Score E Sequences producing significant alignments: (Bits) Value seq2789 342 5e-89 seq17421 154 2e-32 seq2698 143 3e-29 seq2410 84.2 2e-11 >seq2789 Length=15484 Score = 342 bits (378), Expect = 5e-89 Identities = 1121/1711 (66%), Gaps = 62/1711 (4%) Strand=Plus/Plus Query 41622 TAAATGTTTAGTTCTATGAATAACTTCTTTTTGTTTACCTTCATTAAATCCACGAGAAGC 41681 |||||| ||| |||| |||||||| |||||| |||| |||||| | ||| | Sbjct 2099 TAAATGCTTAACTCTACTTTGAACTTCTTCTTGTTTTCCTTTATTAAACGGCCTTGAATC 2158 Query 41682 AGGATTACCAAGATATCCGCAAGTTCGACGAACAACAGACATCTTTTTAGTGTCCATTTC 41741 ||| |||| | |||||| || || | | ||||| | ||| | | || | Sbjct 2159 AGGGCTACCTAAATATCCACATACTCTTCTTATCACAGATACTTTTCTTGCATCATGATT 2218 Query 41742 ACCACATTTAGGGCATTTAAACCCATTCTCTGTAGGAAT-AAATTCTCCATGGAAATCAC 41800 |||||| |||| || ||| || || ||| | ||| |||||| || | | ||| Sbjct 2219 ACCACAACTAGGACAAGAAAAACCCTTACTTGT-GCAATCAAATTCGCCTTTATATCCAC 2277 Query 41801 ATGTAAAGCATTGGTCAACAGGTGTATTTGTTCCAAAATAAT-CAAGATTTTCTACAGCA 41859 || | | || | ||||| || |||||||||||| ||||| || | ||| || | | Sbjct 2278 ATTCATAACACTCGTCAATTGGAGTATTTGTTCCATAATAAGGCACAAATTTATA-ACTA 2336 Query 41860 TAATCCCAAACTTGTTCTAATGCTTTTAAATTATCTTTCATATTAGGAAGTTCTACATAA 41919 |||||||||| | |||||||||||| | ||| | | ||||||||||| ||| | ||| Sbjct 2337 AAATCCCAAACATCTTCTAATGCTTTAATATTTTTTCTCATATTAGGATATTCACCGTAA 2396 Query 41920 GAAATATGACCACCAGTGGC-AATAC--GATGATAATCCTTTTCAAAATCAATTTTTTCA 41976 ||||| |||||| | || ||| | ||| || || ||||||||| |||||||||| Sbjct 2397 CAAATAAAGCCACCATTTGCAAATTCTGGAT-ATGAT--TTTTCAAAAAGAATTTTTTCA 2453 Query 41977 AACGGGTTAACTTTACGTTCTACATCAAGGTGAAAACTATTTGTATACCAACCTTTATCT 42036 | || || ||| || ||||| | ||| |||||||||||||| || || ||| Sbjct 2454 TATGGATTTACTGATTTTTTAACATCCAAGTGGAAACTATTTGTATAATAATTCTTGTCT 2513 Query 42037 GTAATTCCTTTAACAGAACCAAATTCTGCTTTATCTAATTTACAGAATCTGTGGCATAGA 42096 |||| ||||||| | ||||||||| ||||||||||| || ||||| | || ||| Sbjct 2514 GTAACACCTTTAATAATGCCAAATTCTTTTTTATCTAATTGGCAAAATCTATCACAAAGA 2573 Query 42097 CTTTCAGCAGGAGTAGAATAAAGACTGAATGCATATCCAGTTTCTTCTTTCCATTTAGAA 42156 ||||| || || ||| | ||| || ||||||| ||||| | |||||| || Sbjct 2574 TTTTCACTTGGCGTGCTATATAAACTAAAACCATATCCTGTTTCATTTTTCCAGCTATCT 2633 Query 42157 AGGTAATAATTCATTTCTTTTAGAATGTGT-TTGCCAAATTCTTGGGCTTCTTTATTATC 42215 | | | | || ||| | ||| | | | |||||||| |||| ||| || Sbjct 2634 ACTGCCTCTCTTAATTTTTTAACAATAAATAATCCAAAATTCTT-TTTATCTTCATTGTC 2692 Query 42216 AAA---------TGGTTCGTCATTAAAAATTAATTTTAATGTCTCATGAAGACCAATATA 42266 ||| || ||| || ||| ||| || | || |||| | || ||||| Sbjct 2693 AAACATATGTTCTGATTCACTATCAAACATTGCATTAACTGCTTCATTTATTCCTATATA 2752 Query 42267 ACCTAATGAAATAGAACTGCGTCCGTTTTTGAATAATGACAA-GATTTCGTCATTAGGAT 42325 ||||||||||| || | ||| ||||| || ||| ||| || || || | |||| Sbjct 2753 GCCTAATGAAATTGATGCTCTTCCATTTTT-AAAAATTTCAATAATATCATCTTCTGGAT 2811 Query 42326 TCATTCGAACACCAAATGCGCCACCACAATATAAAATTGGAGCCACAGAAGCTTTTGCAC 42385 | | || | || | || || || ||| || || || || || ||||||| ||| Sbjct 2812 TAAGTCTTATTCCGCAAGCACCTTCAGTATACAATATGGGGGCAACCTTAGCTTTTACAC 2871 Query 42386 CACGTAAAGAATCAATTCTAGTCATAAGAGCAGTATAACAGAGGCCAAGTCGATCTCGTA 42445 | | |||||||| ||||| | | | | | | | || | | || Sbjct 2872 CTTTGAGCCTTTCAATTCTTGTCATTAATGATTTTTTAGCAATATTTAATCTTTTTTCTA 2931 Query 42446 ATGATTGAATATATGATTCTTTAGATAAATTGTCACTACCTAATTCCAGGGCTATTCTAG 42505 || || || || ||| || | ||||| ||| ||| ||| | |||||||| | Sbjct 2932 AT-AT--AAAATTAAATTTTTCA---AAATTACCACATCCTGCTTCAATTGCTATTCTGG 2985 Query 42506 GAAGATTTAAAGTGACAACACCCAAATTATTCCTTCCATCTAAAATTTCTTGTCCATTT- 42564 ||| ||||||| | || ||||| |||||||| |||||||| ||| | |||||| Sbjct 2986 GAATATTTAAACTAACCACACCTAAATTATTTCTTCCATCGTGAATACTATTACCATTTT 3045 Query 42565 --TCTTTATAAACCGATAAAAAACTACGACAACCCATAGGAG--AAACAGGAATAGAACT 42620 |||| |||||| || | || || | || ||||| || | | ||||| Sbjct 3046 CATCTTCATAAACAGAAAGGAAGCTTCTGCACCCCATTGGCGTCTTAAAGGAA------- 3098 Query 42621 TCCAGTTATTTCTTTATTAATT--TTAGAAGAAATAATATCAGGGTACATTCTTTTAGCC 42678 ||||| | || | | | || | | || | ||||||||| ||||||| || | Sbjct 3099 -CCAGT--TGTCCTAACAACTTGCTCATAATTTAAAATATCAGGATACATTCGTTGTGTT 3155 Query 42679 GAACATTCTAGAGCTAAtttttttATAGAATAATTAGGGTCTTCAGGTTTTAA----ATT 42734 |||||||| || || | || ||||||| ||||||||| || | | |||| ||| Sbjct 3156 GAACATTCAAGCGCCAGTTGTTTTATATCATAATTAGGATC----GCTATTAATTCTATT 3211 Query 42735 AATTCCTTCTTCAATAAAGAAGACTAATTTTGGAAATATTGCTGTGACTCCATCTTTGCC 42794 | ||||||| || || || | ||||||||||| ||| || | || ||| || Sbjct 3212 TGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAATACTGCCGTTTTTTTATTTTTTCC 3271 Query 42795 TAATCCTTTAATTCTATTTTTTAAAATAGCTTCTTGAATAACAGTGCCCATCCATGTGGT 42854 ||| || || ||||| ||| |||| || | || |||||| | | || ||| | Sbjct 3272 TAACCCATTTATTCTGTTTCTTAATATTGATTTTTGAATTAATCTTTCCTCTTTTGTAAT 3331 Query 42855 T-GAAGTACCAAAACTAATTGTTACAAAAGGAGTTTGCCCATTAGAACTAAAAAGTGTAT 42913 | |||| ||||||| || || ||||| || ||||| ||||| | || | |||| Sbjct 3332 TCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTTGTCCATTTGCGGTATGCAAAGTAT 3390 Query 42914 TAATTTCGTATTCATAAGCC-TGGAAAGCATCATAAACA-TCTTTTTCTGTTTTCTTCA- 42970 ||||||| ||||| ||| || || ||||||||| ||||| |||||||| |||| |||| Sbjct 3391 TAATTTCATATTC-TAATCCTTGAAAAGCATCA-AAACATTCTTTTTCAATTTT-TTCAT 3447 Query 42971 TGGCATATTTGTCAAAATCAGATATGCCCCATTCAAAAGCTTCATTCAGATGTTTTTGAT 43030 | ||||||| || || | || ||| | ||| || | ||| | Sbjct 3448 TAACATATTTATCTGGATTGGGGATATTATATTTTTCTGTTTCTTTAATTAACTTTATTT 3507 Query 43031 AAGTTGCTTCTACATATGGTTCTAGTACAACATCAACATTAGCAAAAGTTGTACCACCAT 43090 || |||| |||||| || ||| | || ||| | ||| || ||||| ||||||| Sbjct 3508 CAGAAGCTTTTACATAAGGGGCTAAAATAATATCGATATTGTTAATCGTTGTTCCACCAT 3567 Query 43091 ATTGATGAGAAGCCACTTGGGCCGTAATCTGTGCCATAATTGCACAAGCGACTCCAATAG 43150 | |||| || ||||| || | || || || | || || || |||||| | Sbjct 3568 AAGTATGACTTGCGACTTGCGCTATTATTTGAGCAGTTATAGCCGTTGCTGTTCCAATTG 3627 Query 43151 ATTTTGGAGTTTCTATTTCAGCATTGCCAAGCTTAAACCCATTTTCAAACATACCTTTTA 43210 | ||||||||| ||||||||||| || | ||||| ||| ||||| ||| ||||||| Sbjct 3628 AACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAAAGCCACCTTCAAGCATTCCTTTTA 3687 Query 43211 AATCGACTAAACAACAATTTGTAAAAGGCAGAGATACACTATAATCTAAATCATGGTAAT 43270 |||| ||||| |||||| | || | | || ||||||||||||||| |||| Sbjct 3688 AATCAACTAACATACAATTAAACATTGGAAAAAATGGTGAATAATCTAAATCATGATAAT 3747 Query 43271 GTATAACTCCTTTGTCATGGGCTTCTACTAC 43301 | || | ||||| ||||| || || ||||| Sbjct 3748 GAATTTCACCTTTTTCATGAGCGTCAACTAC 3778 >seq17421 Length=2767 Score = 154 bits (170), Expect = 2e-32 Identities = 156/202 (77%), Gaps = 11/202 (5%) Strand=Plus/Plus Query 63749 TACCCATCCGGTTTTCCAGTTTGGTGAAGGGTTGTCACCTCTAGTTTTAACCTGCTAGTC 63808 || ||| ||||||||||||| ||||||||| ||||||||| ||||| || ||||| ||| Sbjct 229 TATCCACCCGGTTTTCCAGTATGGTGAAGGAATGTCACCTCAAGTTTCAAGCTGCTTGTC 288 Query 63809 AAGTAATAATTGCATATCGTCCAAATTATCAATCCCGTCTAGGTTATATTACACCACTTC 63868 || |||| |||| ||||||||||| |||||||||| | |||||| | | ||||||||| Sbjct 289 AACTAATGTTTGCTTATCGTCCAAA-CATCAATCCCGCCCAGGTTACAATTCACCACTTC 347 Query 63869 CTAGAATACCAGAGATCTTGTTCTGGATTTAATCGACGTAGCTTACACCATATACGCCTG 63928 | | |||| | | |||||| ||| ||||| |||||||||||||| || Sbjct 348 CAGGGTTACCTTAAA---------GGATTTTATCAACGTAAATTACACCATATACGTTTG 398 Query 63929 ACTGTGGAATTTGGAGCGACCT 63950 | ||||||| |||| ||| ||| Sbjct 399 ATTGTGGAA-TTGGTGCGCCCT 419 Score = 118 bits (130), Expect = 1e-21 Identities = 113/142 (80%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 63752 CCATCCGGTTTTCCAGTTTGGTGAAGGGTTGTCACCTCTAGTTTTAACCTGCTAGTCAAG 63811 ||||||||||||||||||||||||||| ||||||||| |||||||| ||||| ||||| Sbjct 549 CCATCCGGTTTTCCAGTTTGGTGAAGGAATGTCACCTCAAGTTTTAAGCTGCTTGTCAAC 608 Query 63812 TAATAATTGCATATCGTCCAAATTATCAATCCCGTCTAGGTTATATTACACCACTTCCTA 63871 |||| || | |||||| |||| ||||| |||| || || ||| | ||||| | | Sbjct 609 TAATGTTTCCCTATCGT-CAAAACATCAAACCCGCCTTAGTCTAATTTC-CCACTGCTAA 666 Query 63872 GAATACCAGAGATCTTGTTCTG 63893 | | |||||||||||||||| Sbjct 667 GGTTTTCAGAGATCTTGTTCTG 688 >seq2698 Length=11445 Score = 143 bits (158), Expect = 3e-29 Identities = 138/177 (78%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 55541 GTAAATGTTCTGTTAATAACATCTTCTTTCTGTTCTGCAGTCAGAGAATTAAATCTGACG 55600 || || |||||| |||||||||||| || ||||| | || | ||| |||||||| || Sbjct 5493 GTGAAAGTTCTGGTAATAACATCTTGTTGTTGTTCAGGTGTTAAAGAGTTAAATCTAACA 5434 Query 55601 GCATACCCAGAAACGCGAATTGTTAATTGTGGATATTTTTCAGGATGTTCTTTAGCATCT 55660 ||||| || ||||| | ||||||||| || || |||||||||||||||||| ||||| Sbjct 5433 GCATATCCTGAAACCCTAATTGTTAACTGCGGGTATTTTTCAGGATGTTCTACTGCATCA 5374 Query 55661 AACAACATTTCTTTATTAAGAACATTGACATTCAGATGTTGTCCACCTTCGATTCTT 55717 | | ||||||| |||||| || ||||| | ||||||||||||||| | |||| Sbjct 5373 AGAAGTGTTTCTTTTCGAAGAACGTTTACATTTAAATGTTGTCCACCTTCAACTCTT 5317 >seq2410 Length=3205 Score = 84.2 bits (92), Expect = 2e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 64860 TGGTACACACTACAGGATTCGAACCTGTGACCTAGGGCTTAGAAGGTCCTTGCTCTATCC 64919 |||||| | || ||||||||||||| ||||||| |||||||||| ||||||||||| Sbjct 949 TGGTACGCTGTATAGGATTCGAACCTATGACCTACTGCTTAGAAGGCAGTTGCTCTATCC 890 Query 64920 AACTGAGCTAA 64930 ||||||||||| Sbjct 889 AACTGAGCTAA 879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518035665819960