Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_028762.1
Length=161989
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 342 5e-89
seq17421 154 2e-32
seq2698 143 3e-29
seq2410 84.2 2e-11
>seq2789
Length=15484
Score = 342 bits (378), Expect = 5e-89
Identities = 1121/1711 (66%), Gaps = 62/1711 (4%)
Strand=Plus/Plus
Query 41622 TAAATGTTTAGTTCTATGAATAACTTCTTTTTGTTTACCTTCATTAAATCCACGAGAAGC 41681
|||||| ||| |||| |||||||| |||||| |||| |||||| | ||| |
Sbjct 2099 TAAATGCTTAACTCTACTTTGAACTTCTTCTTGTTTTCCTTTATTAAACGGCCTTGAATC 2158
Query 41682 AGGATTACCAAGATATCCGCAAGTTCGACGAACAACAGACATCTTTTTAGTGTCCATTTC 41741
||| |||| | |||||| || || | | ||||| | ||| | | || |
Sbjct 2159 AGGGCTACCTAAATATCCACATACTCTTCTTATCACAGATACTTTTCTTGCATCATGATT 2218
Query 41742 ACCACATTTAGGGCATTTAAACCCATTCTCTGTAGGAAT-AAATTCTCCATGGAAATCAC 41800
|||||| |||| || ||| || || ||| | ||| |||||| || | | |||
Sbjct 2219 ACCACAACTAGGACAAGAAAAACCCTTACTTGT-GCAATCAAATTCGCCTTTATATCCAC 2277
Query 41801 ATGTAAAGCATTGGTCAACAGGTGTATTTGTTCCAAAATAAT-CAAGATTTTCTACAGCA 41859
|| | | || | ||||| || |||||||||||| ||||| || | ||| || | |
Sbjct 2278 ATTCATAACACTCGTCAATTGGAGTATTTGTTCCATAATAAGGCACAAATTTATA-ACTA 2336
Query 41860 TAATCCCAAACTTGTTCTAATGCTTTTAAATTATCTTTCATATTAGGAAGTTCTACATAA 41919
|||||||||| | |||||||||||| | ||| | | ||||||||||| ||| | |||
Sbjct 2337 AAATCCCAAACATCTTCTAATGCTTTAATATTTTTTCTCATATTAGGATATTCACCGTAA 2396
Query 41920 GAAATATGACCACCAGTGGC-AATAC--GATGATAATCCTTTTCAAAATCAATTTTTTCA 41976
||||| |||||| | || ||| | ||| || || ||||||||| ||||||||||
Sbjct 2397 CAAATAAAGCCACCATTTGCAAATTCTGGAT-ATGAT--TTTTCAAAAAGAATTTTTTCA 2453
Query 41977 AACGGGTTAACTTTACGTTCTACATCAAGGTGAAAACTATTTGTATACCAACCTTTATCT 42036
| || || ||| || ||||| | ||| |||||||||||||| || || |||
Sbjct 2454 TATGGATTTACTGATTTTTTAACATCCAAGTGGAAACTATTTGTATAATAATTCTTGTCT 2513
Query 42037 GTAATTCCTTTAACAGAACCAAATTCTGCTTTATCTAATTTACAGAATCTGTGGCATAGA 42096
|||| ||||||| | ||||||||| ||||||||||| || ||||| | || |||
Sbjct 2514 GTAACACCTTTAATAATGCCAAATTCTTTTTTATCTAATTGGCAAAATCTATCACAAAGA 2573
Query 42097 CTTTCAGCAGGAGTAGAATAAAGACTGAATGCATATCCAGTTTCTTCTTTCCATTTAGAA 42156
||||| || || ||| | ||| || ||||||| ||||| | |||||| ||
Sbjct 2574 TTTTCACTTGGCGTGCTATATAAACTAAAACCATATCCTGTTTCATTTTTCCAGCTATCT 2633
Query 42157 AGGTAATAATTCATTTCTTTTAGAATGTGT-TTGCCAAATTCTTGGGCTTCTTTATTATC 42215
| | | | || ||| | ||| | | | |||||||| |||| ||| ||
Sbjct 2634 ACTGCCTCTCTTAATTTTTTAACAATAAATAATCCAAAATTCTT-TTTATCTTCATTGTC 2692
Query 42216 AAA---------TGGTTCGTCATTAAAAATTAATTTTAATGTCTCATGAAGACCAATATA 42266
||| || ||| || ||| ||| || | || |||| | || |||||
Sbjct 2693 AAACATATGTTCTGATTCACTATCAAACATTGCATTAACTGCTTCATTTATTCCTATATA 2752
Query 42267 ACCTAATGAAATAGAACTGCGTCCGTTTTTGAATAATGACAA-GATTTCGTCATTAGGAT 42325
||||||||||| || | ||| ||||| || ||| ||| || || || | ||||
Sbjct 2753 GCCTAATGAAATTGATGCTCTTCCATTTTT-AAAAATTTCAATAATATCATCTTCTGGAT 2811
Query 42326 TCATTCGAACACCAAATGCGCCACCACAATATAAAATTGGAGCCACAGAAGCTTTTGCAC 42385
| | || | || | || || || ||| || || || || || ||||||| |||
Sbjct 2812 TAAGTCTTATTCCGCAAGCACCTTCAGTATACAATATGGGGGCAACCTTAGCTTTTACAC 2871
Query 42386 CACGTAAAGAATCAATTCTAGTCATAAGAGCAGTATAACAGAGGCCAAGTCGATCTCGTA 42445
| | |||||||| ||||| | | | | | | | || | | ||
Sbjct 2872 CTTTGAGCCTTTCAATTCTTGTCATTAATGATTTTTTAGCAATATTTAATCTTTTTTCTA 2931
Query 42446 ATGATTGAATATATGATTCTTTAGATAAATTGTCACTACCTAATTCCAGGGCTATTCTAG 42505
|| || || || ||| || | ||||| ||| ||| ||| | |||||||| |
Sbjct 2932 AT-AT--AAAATTAAATTTTTCA---AAATTACCACATCCTGCTTCAATTGCTATTCTGG 2985
Query 42506 GAAGATTTAAAGTGACAACACCCAAATTATTCCTTCCATCTAAAATTTCTTGTCCATTT- 42564
||| ||||||| | || ||||| |||||||| |||||||| ||| | ||||||
Sbjct 2986 GAATATTTAAACTAACCACACCTAAATTATTTCTTCCATCGTGAATACTATTACCATTTT 3045
Query 42565 --TCTTTATAAACCGATAAAAAACTACGACAACCCATAGGAG--AAACAGGAATAGAACT 42620
|||| |||||| || | || || | || ||||| || | | |||||
Sbjct 3046 CATCTTCATAAACAGAAAGGAAGCTTCTGCACCCCATTGGCGTCTTAAAGGAA------- 3098
Query 42621 TCCAGTTATTTCTTTATTAATT--TTAGAAGAAATAATATCAGGGTACATTCTTTTAGCC 42678
||||| | || | | | || | | || | ||||||||| ||||||| || |
Sbjct 3099 -CCAGT--TGTCCTAACAACTTGCTCATAATTTAAAATATCAGGATACATTCGTTGTGTT 3155
Query 42679 GAACATTCTAGAGCTAAtttttttATAGAATAATTAGGGTCTTCAGGTTTTAA----ATT 42734
|||||||| || || | || ||||||| ||||||||| || | | |||| |||
Sbjct 3156 GAACATTCAAGCGCCAGTTGTTTTATATCATAATTAGGATC----GCTATTAATTCTATT 3211
Query 42735 AATTCCTTCTTCAATAAAGAAGACTAATTTTGGAAATATTGCTGTGACTCCATCTTTGCC 42794
| ||||||| || || || | ||||||||||| ||| || | || ||| ||
Sbjct 3212 TGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAATACTGCCGTTTTTTTATTTTTTCC 3271
Query 42795 TAATCCTTTAATTCTATTTTTTAAAATAGCTTCTTGAATAACAGTGCCCATCCATGTGGT 42854
||| || || ||||| ||| |||| || | || |||||| | | || ||| |
Sbjct 3272 TAACCCATTTATTCTGTTTCTTAATATTGATTTTTGAATTAATCTTTCCTCTTTTGTAAT 3331
Query 42855 T-GAAGTACCAAAACTAATTGTTACAAAAGGAGTTTGCCCATTAGAACTAAAAAGTGTAT 42913
| |||| ||||||| || || ||||| || ||||| ||||| | || | ||||
Sbjct 3332 TCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTTGTCCATTTGCGGTATGCAAAGTAT 3390
Query 42914 TAATTTCGTATTCATAAGCC-TGGAAAGCATCATAAACA-TCTTTTTCTGTTTTCTTCA- 42970
||||||| ||||| ||| || || ||||||||| ||||| |||||||| |||| ||||
Sbjct 3391 TAATTTCATATTC-TAATCCTTGAAAAGCATCA-AAACATTCTTTTTCAATTTT-TTCAT 3447
Query 42971 TGGCATATTTGTCAAAATCAGATATGCCCCATTCAAAAGCTTCATTCAGATGTTTTTGAT 43030
| ||||||| || || | || ||| | ||| || | ||| |
Sbjct 3448 TAACATATTTATCTGGATTGGGGATATTATATTTTTCTGTTTCTTTAATTAACTTTATTT 3507
Query 43031 AAGTTGCTTCTACATATGGTTCTAGTACAACATCAACATTAGCAAAAGTTGTACCACCAT 43090
|| |||| |||||| || ||| | || ||| | ||| || ||||| |||||||
Sbjct 3508 CAGAAGCTTTTACATAAGGGGCTAAAATAATATCGATATTGTTAATCGTTGTTCCACCAT 3567
Query 43091 ATTGATGAGAAGCCACTTGGGCCGTAATCTGTGCCATAATTGCACAAGCGACTCCAATAG 43150
| |||| || ||||| || | || || || | || || || |||||| |
Sbjct 3568 AAGTATGACTTGCGACTTGCGCTATTATTTGAGCAGTTATAGCCGTTGCTGTTCCAATTG 3627
Query 43151 ATTTTGGAGTTTCTATTTCAGCATTGCCAAGCTTAAACCCATTTTCAAACATACCTTTTA 43210
| ||||||||| ||||||||||| || | ||||| ||| ||||| ||| |||||||
Sbjct 3628 AACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAAAGCCACCTTCAAGCATTCCTTTTA 3687
Query 43211 AATCGACTAAACAACAATTTGTAAAAGGCAGAGATACACTATAATCTAAATCATGGTAAT 43270
|||| ||||| |||||| | || | | || ||||||||||||||| ||||
Sbjct 3688 AATCAACTAACATACAATTAAACATTGGAAAAAATGGTGAATAATCTAAATCATGATAAT 3747
Query 43271 GTATAACTCCTTTGTCATGGGCTTCTACTAC 43301
| || | ||||| ||||| || || |||||
Sbjct 3748 GAATTTCACCTTTTTCATGAGCGTCAACTAC 3778
>seq17421
Length=2767
Score = 154 bits (170), Expect = 2e-32
Identities = 156/202 (77%), Gaps = 11/202 (5%)
Strand=Plus/Plus
Query 63749 TACCCATCCGGTTTTCCAGTTTGGTGAAGGGTTGTCACCTCTAGTTTTAACCTGCTAGTC 63808
|| ||| ||||||||||||| ||||||||| ||||||||| ||||| || ||||| |||
Sbjct 229 TATCCACCCGGTTTTCCAGTATGGTGAAGGAATGTCACCTCAAGTTTCAAGCTGCTTGTC 288
Query 63809 AAGTAATAATTGCATATCGTCCAAATTATCAATCCCGTCTAGGTTATATTACACCACTTC 63868
|| |||| |||| ||||||||||| |||||||||| | |||||| | | |||||||||
Sbjct 289 AACTAATGTTTGCTTATCGTCCAAA-CATCAATCCCGCCCAGGTTACAATTCACCACTTC 347
Query 63869 CTAGAATACCAGAGATCTTGTTCTGGATTTAATCGACGTAGCTTACACCATATACGCCTG 63928
| | |||| | | |||||| ||| ||||| |||||||||||||| ||
Sbjct 348 CAGGGTTACCTTAAA---------GGATTTTATCAACGTAAATTACACCATATACGTTTG 398
Query 63929 ACTGTGGAATTTGGAGCGACCT 63950
| ||||||| |||| ||| |||
Sbjct 399 ATTGTGGAA-TTGGTGCGCCCT 419
Score = 118 bits (130), Expect = 1e-21
Identities = 113/142 (80%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 63752 CCATCCGGTTTTCCAGTTTGGTGAAGGGTTGTCACCTCTAGTTTTAACCTGCTAGTCAAG 63811
||||||||||||||||||||||||||| ||||||||| |||||||| ||||| |||||
Sbjct 549 CCATCCGGTTTTCCAGTTTGGTGAAGGAATGTCACCTCAAGTTTTAAGCTGCTTGTCAAC 608
Query 63812 TAATAATTGCATATCGTCCAAATTATCAATCCCGTCTAGGTTATATTACACCACTTCCTA 63871
|||| || | |||||| |||| ||||| |||| || || ||| | ||||| | |
Sbjct 609 TAATGTTTCCCTATCGT-CAAAACATCAAACCCGCCTTAGTCTAATTTC-CCACTGCTAA 666
Query 63872 GAATACCAGAGATCTTGTTCTG 63893
| | ||||||||||||||||
Sbjct 667 GGTTTTCAGAGATCTTGTTCTG 688
>seq2698
Length=11445
Score = 143 bits (158), Expect = 3e-29
Identities = 138/177 (78%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 55541 GTAAATGTTCTGTTAATAACATCTTCTTTCTGTTCTGCAGTCAGAGAATTAAATCTGACG 55600
|| || |||||| |||||||||||| || ||||| | || | ||| |||||||| ||
Sbjct 5493 GTGAAAGTTCTGGTAATAACATCTTGTTGTTGTTCAGGTGTTAAAGAGTTAAATCTAACA 5434
Query 55601 GCATACCCAGAAACGCGAATTGTTAATTGTGGATATTTTTCAGGATGTTCTTTAGCATCT 55660
||||| || ||||| | ||||||||| || || |||||||||||||||||| |||||
Sbjct 5433 GCATATCCTGAAACCCTAATTGTTAACTGCGGGTATTTTTCAGGATGTTCTACTGCATCA 5374
Query 55661 AACAACATTTCTTTATTAAGAACATTGACATTCAGATGTTGTCCACCTTCGATTCTT 55717
| | ||||||| |||||| || ||||| | ||||||||||||||| | ||||
Sbjct 5373 AGAAGTGTTTCTTTTCGAAGAACGTTTACATTTAAATGTTGTCCACCTTCAACTCTT 5317
>seq2410
Length=3205
Score = 84.2 bits (92), Expect = 2e-11
Identities = 61/71 (86%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 64860 TGGTACACACTACAGGATTCGAACCTGTGACCTAGGGCTTAGAAGGTCCTTGCTCTATCC 64919
|||||| | || ||||||||||||| ||||||| |||||||||| |||||||||||
Sbjct 949 TGGTACGCTGTATAGGATTCGAACCTATGACCTACTGCTTAGAAGGCAGTTGCTCTATCC 890
Query 64920 AACTGAGCTAA 64930
|||||||||||
Sbjct 889 AACTGAGCTAA 879
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 518035665819960
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