Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_028780.1
Length=167124
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 131 2e-25
>seq2789
Length=15484
Score = 131 bits (144), Expect = 2e-25
Identities = 592/920 (64%), Gaps = 35/920 (4%)
Strand=Plus/Minus
Query 120056 TAAACGAGAATGCTAATAAAGATTCTCGTGTTTTTCCAACTCAACGGGACCTTATGGCTG 120115
|||| || ||||||||||||||| |||| ||||||||||| | || | | ||||
Sbjct 3885 TAAATGAAAATGCTAATAAAGATAGCAATGTTATTCCAACTCAAAGAGATTTGTTAGCTG 3826
Query 120116 GTATTGTGTCTAAACACATTGCCAAAAAT---ATGGTCCC----GTCTTTTATTATGAAA 120168
|||| | |||||||| ||| |||||| || | || | | | | | |||
Sbjct 3825 GTATAATTTCTAAACATTATGCTAAAAATCATATACTTCCCAAAGACGT--AGT-TGAC- 3770
Query 120169 GCGCATGAAAGCGGAATTATCCATTTCCACGATATTGATTATTCCCCTGCTCTTCCATTT 120228
|| ||||||| || || |||| || ||| | |||||||| || | ||||| |
Sbjct 3769 GCTCATGAAAAAGGTGAAATTCATTATCATGATTTAGATTATTCACCATTTTTTCCAATG 3710
Query 120229 ACTAATTGCTGTTTAGTAGATTTAAAAGGAATGCTTGAAAACGGATTTAAGCTAGGTAAT 120288
|||||| ||||| ||||||||||||||||||||| || ||||| |||| |||
Sbjct 3709 TTTAATTGTATGTTAGTTGATTTAAAAGGAATGCTTGAAGGTGGCTTTAAAATAGGAAAT 3650
Query 120289 GCACAGATTGAAACTCCTAAATCAATTGGCGTTGCTACTGCAATTATGGCACAAATTACT 120348
|| | ||||||||||| |||||||| || || || || | || ||||| |
Sbjct 3649 GCTGAAATTGAAACTCCACGTTCAATTGGAACAGCAACGGCTATAACTGCTCAAATAATA 3590
Query 120349 GCACAGGTTGCTTCTCACCAATACGGCGGAACGACTTTTGCGAATGTAGATAAAGTACTT 120408
|| || || || ||| || || ||||| || || ||| | ||| | || ||
Sbjct 3589 GCGCAAGTCGCAAGTCATACTTATGGTGGAACAACGATTAACAATATCGAT--ATTATTT 3532
Query 120409 T--CTCCTTATGTTAAACGCACCT-ATGCAAAACATATTGAGGATGCAGAAAAATGGCAA 120465
| | ||||||| |||| || || | ||| ||| | || ||||||||| |
Sbjct 3531 TAGCCCCTTATG-TAAAAGCTTCTGAAATAAAGTTAATTAAAGAAACAGAAAAATATAAT 3473
Query 120466 ATCGCCGATGCGTTGAATTATGCTCAATCTAAAACAGAAAAAGACGTATACGATGCATTC 120525
||| || || | || |||| | | |||| |||||||| | ||||| ||
Sbjct 3472 ATCCCCAATCCAGATAAATATGTTAATGAAAAAATTGAAAAAGAATGTTTTGATGCTTTT 3413
Query 120526 CAAGCTTATGAATATGAAGTAAATACTCTCTTTAGTTCAAACGGACAGACTCCTTTTGTA 120585
|||| | ||||||||| | |||||| | || |||| ||||| || || |||||
Sbjct 3412 CAAGGATTAGAATATGAAATTAATACTTTGCATACCGCAAATGGACAAACCCCATTTGTT 3353
Query 120586 ACAATTACATTTGGTACGGGAACTGACTGGA-CTGAACGAATGATTCAGAAAGCAATTCT 120644
|| || ||||| || | | | || | ||| || | ||||| ||| |||| |
Sbjct 3352 ACTTTTGGTTTTGG-ACTTGGAATTACAAAAGAGGAAAGATTAATTCAAAAATCAATATT 3294
Query 120645 GAAAAATCGTATTAAAGGTCTTGGTCGTGATGGGATAACTCCTATTTTCCCTAAGCTTGT 120704
| ||| | || || || | || || | ||| | | || || || |||||
Sbjct 3293 AAGAAACAGAATAAATGGGTTAGGAAAAAATAAAAAAACGGCAGTATTTCCAAAACTTGT 3234
Query 120705 TATGTTCGTTGAAGAAGGTGTTAATCTTTATAAAGACGATCCGAACTATGATATTAAGCA 120764
| | | | ||||||| ||| ||| |||||| || |||||||| || ||
Sbjct 3233 TTTTGCCATAAAAGAAGGGACAAATAGAATTAATAGCGATCCTAATTATGATATAAAACA 3174
Query 120765 GCTTGCTCTAGAGTGCGCAAGCAAAAGGATGTATCCTGATATTATTTCAGCTAAGAACAA 120824
|| || || || || ||| || | |||||||||||||| ||| | || || |
Sbjct 3173 ACTGGCGCTTGAATGTTCAACACAACGAATGTATCCTGATAT--TTTAAATTATGAGC-- 3118
Query 120825 TAAAGCTATCACTGGTTCATCT-GTTCCTGT--TTCTCCAATGGGTTGCCGTAGTTTC-- 120879
||| | | | | || || |||||| | | |||||||| ||| | || |||
Sbjct 3117 --AAGTTGT---TAGGACAACTGGTTCCTTTAAGACGCCAATGGGGTGCAGAAGCTTCCT 3063
Query 120880 TTGAGCGTATGGAAAGATTCGACTGGTAATGAAATTCTTGATGGACGTAATAATCTTGGT 120939
|| | |||| ||||| | ||||||| |||| |||||| | |||||| | |||
Sbjct 3062 TTCTGTTTATG--AAGATGAAAATGGTAATAGTATTCACGATGGAAGAAATAATTTAGGT 3005
Query 120940 GTTGTAACATTGAATCTTCC 120959
|| || | || ||| ||||
Sbjct 3004 GTGGTTAGTTTAAATATTCC 2985
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 534461288355360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |