Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_028780.1 Length=167124 Score E Sequences producing significant alignments: (Bits) Value seq2789 131 2e-25 >seq2789 Length=15484 Score = 131 bits (144), Expect = 2e-25 Identities = 592/920 (64%), Gaps = 35/920 (4%) Strand=Plus/Minus Query 120056 TAAACGAGAATGCTAATAAAGATTCTCGTGTTTTTCCAACTCAACGGGACCTTATGGCTG 120115 |||| || ||||||||||||||| |||| ||||||||||| | || | | |||| Sbjct 3885 TAAATGAAAATGCTAATAAAGATAGCAATGTTATTCCAACTCAAAGAGATTTGTTAGCTG 3826 Query 120116 GTATTGTGTCTAAACACATTGCCAAAAAT---ATGGTCCC----GTCTTTTATTATGAAA 120168 |||| | |||||||| ||| |||||| || | || | | | | | ||| Sbjct 3825 GTATAATTTCTAAACATTATGCTAAAAATCATATACTTCCCAAAGACGT--AGT-TGAC- 3770 Query 120169 GCGCATGAAAGCGGAATTATCCATTTCCACGATATTGATTATTCCCCTGCTCTTCCATTT 120228 || ||||||| || || |||| || ||| | |||||||| || | ||||| | Sbjct 3769 GCTCATGAAAAAGGTGAAATTCATTATCATGATTTAGATTATTCACCATTTTTTCCAATG 3710 Query 120229 ACTAATTGCTGTTTAGTAGATTTAAAAGGAATGCTTGAAAACGGATTTAAGCTAGGTAAT 120288 |||||| ||||| ||||||||||||||||||||| || ||||| |||| ||| Sbjct 3709 TTTAATTGTATGTTAGTTGATTTAAAAGGAATGCTTGAAGGTGGCTTTAAAATAGGAAAT 3650 Query 120289 GCACAGATTGAAACTCCTAAATCAATTGGCGTTGCTACTGCAATTATGGCACAAATTACT 120348 || | ||||||||||| |||||||| || || || || | || ||||| | Sbjct 3649 GCTGAAATTGAAACTCCACGTTCAATTGGAACAGCAACGGCTATAACTGCTCAAATAATA 3590 Query 120349 GCACAGGTTGCTTCTCACCAATACGGCGGAACGACTTTTGCGAATGTAGATAAAGTACTT 120408 || || || || ||| || || ||||| || || ||| | ||| | || || Sbjct 3589 GCGCAAGTCGCAAGTCATACTTATGGTGGAACAACGATTAACAATATCGAT--ATTATTT 3532 Query 120409 T--CTCCTTATGTTAAACGCACCT-ATGCAAAACATATTGAGGATGCAGAAAAATGGCAA 120465 | | ||||||| |||| || || | ||| ||| | || ||||||||| | Sbjct 3531 TAGCCCCTTATG-TAAAAGCTTCTGAAATAAAGTTAATTAAAGAAACAGAAAAATATAAT 3473 Query 120466 ATCGCCGATGCGTTGAATTATGCTCAATCTAAAACAGAAAAAGACGTATACGATGCATTC 120525 ||| || || | || |||| | | |||| |||||||| | ||||| || Sbjct 3472 ATCCCCAATCCAGATAAATATGTTAATGAAAAAATTGAAAAAGAATGTTTTGATGCTTTT 3413 Query 120526 CAAGCTTATGAATATGAAGTAAATACTCTCTTTAGTTCAAACGGACAGACTCCTTTTGTA 120585 |||| | ||||||||| | |||||| | || |||| ||||| || || ||||| Sbjct 3412 CAAGGATTAGAATATGAAATTAATACTTTGCATACCGCAAATGGACAAACCCCATTTGTT 3353 Query 120586 ACAATTACATTTGGTACGGGAACTGACTGGA-CTGAACGAATGATTCAGAAAGCAATTCT 120644 || || ||||| || | | | || | ||| || | ||||| ||| |||| | Sbjct 3352 ACTTTTGGTTTTGG-ACTTGGAATTACAAAAGAGGAAAGATTAATTCAAAAATCAATATT 3294 Query 120645 GAAAAATCGTATTAAAGGTCTTGGTCGTGATGGGATAACTCCTATTTTCCCTAAGCTTGT 120704 | ||| | || || || | || || | ||| | | || || || ||||| Sbjct 3293 AAGAAACAGAATAAATGGGTTAGGAAAAAATAAAAAAACGGCAGTATTTCCAAAACTTGT 3234 Query 120705 TATGTTCGTTGAAGAAGGTGTTAATCTTTATAAAGACGATCCGAACTATGATATTAAGCA 120764 | | | | ||||||| ||| ||| |||||| || |||||||| || || Sbjct 3233 TTTTGCCATAAAAGAAGGGACAAATAGAATTAATAGCGATCCTAATTATGATATAAAACA 3174 Query 120765 GCTTGCTCTAGAGTGCGCAAGCAAAAGGATGTATCCTGATATTATTTCAGCTAAGAACAA 120824 || || || || || ||| || | |||||||||||||| ||| | || || | Sbjct 3173 ACTGGCGCTTGAATGTTCAACACAACGAATGTATCCTGATAT--TTTAAATTATGAGC-- 3118 Query 120825 TAAAGCTATCACTGGTTCATCT-GTTCCTGT--TTCTCCAATGGGTTGCCGTAGTTTC-- 120879 ||| | | | | || || |||||| | | |||||||| ||| | || ||| Sbjct 3117 --AAGTTGT---TAGGACAACTGGTTCCTTTAAGACGCCAATGGGGTGCAGAAGCTTCCT 3063 Query 120880 TTGAGCGTATGGAAAGATTCGACTGGTAATGAAATTCTTGATGGACGTAATAATCTTGGT 120939 || | |||| ||||| | ||||||| |||| |||||| | |||||| | ||| Sbjct 3062 TTCTGTTTATG--AAGATGAAAATGGTAATAGTATTCACGATGGAAGAAATAATTTAGGT 3005 Query 120940 GTTGTAACATTGAATCTTCC 120959 || || | || ||| |||| Sbjct 3004 GTGGTTAGTTTAAATATTCC 2985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534461288355360