Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_028820.1 Length=162101 Score E Sequences producing significant alignments: (Bits) Value seq1262 91.5 2e-13 seq2410 89.7 5e-13 >seq1262 Length=72559 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 67177 TTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCTATC 67236 |||||||||| | ||||| ||||||||| |||| | ||||||||||||| ||||||| | Sbjct 63817 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAAC 63876 Query 67237 CATCTGAGCTAAAGGGCC 67254 || ||||||||| ||||| Sbjct 63877 CAACTGAGCTAAGGGGCC 63894 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 67190 CTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCTATCCATCTGAGCTAAA 67249 ||||| ||||||||| |||| | ||||||||||||| ||||||| ||| ||||||||| Sbjct 64415 CTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAACCAACTGAGCTAAG 64474 Query 67250 GGGCCTTTGTTTA 67262 | |||||| |||| Sbjct 64475 GAGCCTTTATTTA 64487 >seq2410 Length=3205 Score = 89.7 bits (98), Expect = 5e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 67177 TTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCTATC 67236 |||||||||| | ||||| ||||||||| |||| | ||||||||||||| ||||||| | Sbjct 1027 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTGCTCTAAC 968 Query 67237 CATCTGAGCTAAAGGGC 67253 || ||||||||| |||| Sbjct 967 CAACTGAGCTAAGGGGC 951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518393926720440