Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_028840.1
Length=111751
Score E
Sequences producing significant alignments: (Bits) Value
seq17421 89.7 4e-13
seq2698 89.7 4e-13
seq2789 84.2 2e-11
>seq17421
Length=2767
Score = 89.7 bits (98), Expect = 4e-13
Identities = 58/64 (91%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 103005 GTCAGAGTAAATTAAACCTACTATCTCGGTTGAGCTGTTTTAATGGGTTCGAATCCCAGC 103064
|||||| | |||||||| || |||||||||| ||||||||||||||||||||||||||||
Sbjct 1473 GTCAGATTTAATTAAACTTAGTATCTCGGTTAAGCTGTTTTAATGGGTTCGAATCCCAGC 1414
Query 103065 GAGG 103068
|||
Sbjct 1413 AAGG 1410
>seq2698
Length=11445
Score = 89.7 bits (98), Expect = 4e-13
Identities = 115/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 106573 TTGAAGGTGGTCAACACCTAAATGTCAATGTGTTAAGTCGTGATCAGCTTTTGGATGCAC 106632
|||||||||| ||||| ||||||| || || | | || ||| | ||||||
Sbjct 5322 TTGAAGGTGGACAACATTTAAATGTAAACGTTCTTCGAAAAGAAACACTTCTTGATGCAG 5381
Query 106633 AGAAACATCCTGAAAAATACCCTCAATTAACTATCCGTGTTTCAGGATACGCTGTACGTT 106692
||||||||||||||||||| || ||||| || | ||||||||||| ||||| | |
Sbjct 5382 TAGAACATCCTGAAAAATACCCGCAGTTAACAATTAGGGTTTCAGGATATGCTGTTAGAT 5441
Query 106693 TTAATGCACTGACGCGTGAACAACAGAACGACGTTATTA 106731
|||| | | || | ||||||||| | || |||||||
Sbjct 5442 TTAACTCTTTAACACCTGAACAACAACAAGATGTTATTA 5480
>seq2789
Length=15484
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 78760 CAAATACCAGTTTCGGGAAGATAGCTGTACGTTTATTGATACCTAAGCCATCCATGCGTA 78819
|||| || ||||| || || | || || |||||| | ||||| |||| || |
Sbjct 3229 CAAAAACAAGTTTTGGAAATACTGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGT 3288
Query 78820 CTTTCAGTATTGCTTTCTGTACTAGACGTGCTTCCCAAGAAGTTCCTAGACCAAAACCAA 78879
| | | ||||| ||| || | || | | | || | | |||| || ||||||||||
Sbjct 3289 TTCTTAATATTGATTTTTGAATTAATCTTTCCTCTTTTGTAATTCCAAGTCCAAAACCAA 3348
Query 78880 AGGTAATAAATGGACTCTGACCATTAGAGTTGAACATGGTATTGATTTCATATTCTAAAC 78939
| |||| |||||| | || ||||| | | | || ||||| |||||||||||||| |
Sbjct 3349 AAGTAACAAATGGGGTTTGTCCATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATC 3408
Query 78940 CCTGACAAGCGTCATAGACTTCTTTTTCA 78968
| ||| |||| ||| | ||||||||||
Sbjct 3409 CTTGAAAAGCATCAAAACATTCTTTTTCA 3437
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357343126710368
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |