Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_028840.1 Length=111751 Score E Sequences producing significant alignments: (Bits) Value seq17421 89.7 4e-13 seq2698 89.7 4e-13 seq2789 84.2 2e-11 >seq17421 Length=2767 Score = 89.7 bits (98), Expect = 4e-13 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 103005 GTCAGAGTAAATTAAACCTACTATCTCGGTTGAGCTGTTTTAATGGGTTCGAATCCCAGC 103064 |||||| | |||||||| || |||||||||| |||||||||||||||||||||||||||| Sbjct 1473 GTCAGATTTAATTAAACTTAGTATCTCGGTTAAGCTGTTTTAATGGGTTCGAATCCCAGC 1414 Query 103065 GAGG 103068 ||| Sbjct 1413 AAGG 1410 >seq2698 Length=11445 Score = 89.7 bits (98), Expect = 4e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 106573 TTGAAGGTGGTCAACACCTAAATGTCAATGTGTTAAGTCGTGATCAGCTTTTGGATGCAC 106632 |||||||||| ||||| ||||||| || || | | || ||| | |||||| Sbjct 5322 TTGAAGGTGGACAACATTTAAATGTAAACGTTCTTCGAAAAGAAACACTTCTTGATGCAG 5381 Query 106633 AGAAACATCCTGAAAAATACCCTCAATTAACTATCCGTGTTTCAGGATACGCTGTACGTT 106692 ||||||||||||||||||| || ||||| || | ||||||||||| ||||| | | Sbjct 5382 TAGAACATCCTGAAAAATACCCGCAGTTAACAATTAGGGTTTCAGGATATGCTGTTAGAT 5441 Query 106693 TTAATGCACTGACGCGTGAACAACAGAACGACGTTATTA 106731 |||| | | || | ||||||||| | || ||||||| Sbjct 5442 TTAACTCTTTAACACCTGAACAACAACAAGATGTTATTA 5480 >seq2789 Length=15484 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 78760 CAAATACCAGTTTCGGGAAGATAGCTGTACGTTTATTGATACCTAAGCCATCCATGCGTA 78819 |||| || ||||| || || | || || |||||| | ||||| |||| || | Sbjct 3229 CAAAAACAAGTTTTGGAAATACTGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGT 3288 Query 78820 CTTTCAGTATTGCTTTCTGTACTAGACGTGCTTCCCAAGAAGTTCCTAGACCAAAACCAA 78879 | | | ||||| ||| || | || | | | || | | |||| || |||||||||| Sbjct 3289 TTCTTAATATTGATTTTTGAATTAATCTTTCCTCTTTTGTAATTCCAAGTCCAAAACCAA 3348 Query 78880 AGGTAATAAATGGACTCTGACCATTAGAGTTGAACATGGTATTGATTTCATATTCTAAAC 78939 | |||| |||||| | || ||||| | | | || ||||| |||||||||||||| | Sbjct 3349 AAGTAACAAATGGGGTTTGTCCATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATC 3408 Query 78940 CCTGACAAGCGTCATAGACTTCTTTTTCA 78968 | ||| |||| ||| | |||||||||| Sbjct 3409 CTTGAAAAGCATCAAAACATTCTTTTTCA 3437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357343126710368